Wall clock time and date at job start Mon Mar 30 2020 00:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 C 1.50698 * 109.47337 * 300.00240 * 3 2 1 5 5 O 1.20822 * 119.99804 * 240.00057 * 4 3 2 6 6 O 1.34231 * 120.00053 * 60.00042 * 4 3 2 7 7 C 1.45198 * 116.99983 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46884 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00162 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99868 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47023 * 90.00014 * 14 12 10 16 16 H 1.48496 * 109.47251 * 210.00457 * 14 12 10 17 17 H 1.48498 * 109.47139 * 330.00202 * 14 12 10 18 18 C 1.53000 * 109.47012 * 60.00450 * 3 2 1 19 19 C 1.52999 * 109.47492 * 180.02562 * 18 3 2 20 20 C 1.53005 * 109.47083 * 299.99788 * 19 18 3 21 21 C 1.53000 * 109.46784 * 59.99778 * 20 19 18 22 22 C 1.52999 * 109.47048 * 179.97438 * 3 2 1 23 23 H 1.08992 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47020 * 300.00107 * 1 2 3 25 25 H 1.09002 * 109.47180 * 59.99819 * 1 2 3 26 26 H 1.08998 * 109.47295 * 240.00377 * 2 1 3 27 27 H 1.08997 * 109.47549 * 119.99865 * 2 1 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 7 6 4 29 29 H 1.09001 * 109.46782 * 299.99696 * 7 6 4 30 30 H 1.09001 * 109.47194 * 299.99482 * 8 7 6 31 31 H 1.08992 * 109.47399 * 59.99654 * 8 7 6 32 32 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 33 33 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 34 34 H 0.96996 * 119.99309 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.46945 * 300.00099 * 18 3 2 36 36 H 1.09002 * 109.47368 * 59.99726 * 18 3 2 37 37 H 1.08998 * 109.47770 * 179.97438 * 19 18 3 38 38 H 1.09002 * 109.47066 * 59.99507 * 19 18 3 39 39 H 1.08999 * 109.47193 * 300.00256 * 20 19 18 40 40 H 1.08992 * 109.47235 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.46870 * 180.02562 * 21 20 19 42 42 H 1.08989 * 109.47580 * 60.00036 * 21 20 19 43 43 H 1.09002 * 109.47180 * 300.00181 * 22 3 2 44 44 H 1.08998 * 109.47295 * 60.00377 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 -1.2304 5 8 2.3228 2.6122 -2.0257 6 8 0.2179 2.2757 -1.4428 7 6 -0.1938 2.9714 -2.6489 8 6 -1.7217 3.0110 -2.7184 9 6 -2.1555 3.7436 -3.9896 10 6 -3.6604 3.7820 -4.0585 11 1 -4.2487 3.3289 -3.2742 12 6 -4.2864 4.3957 -5.1227 13 7 -5.5998 4.4288 -5.1831 14 14 -3.2691 5.1801 -6.4789 15 1 -2.9979 4.1755 -7.5384 16 1 -4.0171 6.3234 -7.0605 17 1 -1.9834 5.6650 -5.9158 18 6 1.5301 2.1637 1.2493 19 6 2.0395 3.6064 1.2491 20 6 3.5695 3.6071 1.2487 21 6 4.0794 2.8859 -0.0006 22 6 3.5700 1.4425 0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.1959 2.4474 -3.5216 29 1 0.1960 3.9892 -2.6321 30 1 -2.1111 1.9931 -2.7354 31 1 -2.1117 3.5347 -1.8457 32 1 -1.7661 4.7615 -3.9732 33 1 -1.7655 3.2194 -4.8622 34 1 -6.0401 4.8609 -5.9316 35 1 0.4400 2.1637 1.2494 36 1 1.8934 1.6499 2.1393 37 1 1.6758 4.1204 2.1389 38 1 1.6757 4.1200 0.3591 39 1 3.9333 3.0934 2.1386 40 1 3.9324 4.6348 1.2481 41 1 5.1695 2.8859 -0.0006 42 1 3.7157 3.3994 -0.8905 43 1 3.9330 0.9288 0.8909 44 1 3.9337 0.9287 -0.8891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764674740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:57 Heat of formation + Delta-G solvation = -128.180182 kcal Electronic energy + Delta-G solvation = -21566.372767 eV Core-core repulsion = 18482.225210 eV Total energy + Delta-G solvation = -3084.147557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18464 -38.30023 -36.35493 -34.43375 -33.88562 -31.81978 -30.95162 -29.28818 -27.64911 -24.52619 -23.79413 -22.64697 -22.14338 -20.66628 -20.35098 -19.31926 -17.20008 -16.80522 -16.61527 -15.84753 -15.42697 -14.53574 -14.38034 -14.24675 -14.00573 -13.71993 -13.47564 -13.33996 -12.83968 -12.73534 -12.41793 -12.29218 -12.12664 -11.94306 -11.69084 -11.38678 -11.20774 -11.18123 -11.01530 -10.88427 -10.76480 -10.34354 -10.24990 -10.15237 -10.12217 -9.91626 -9.73008 -9.63482 -9.24980 -8.57052 -6.07437 -4.06347 2.35260 2.85862 3.29467 3.37114 3.40674 4.32680 4.42674 4.44279 4.47805 4.84850 4.92593 4.96243 5.10270 5.19464 5.25454 5.26052 5.32038 5.43022 5.47022 5.47549 5.52158 5.57925 5.63300 5.76093 5.82969 5.87597 5.90302 5.94602 6.02727 6.04711 6.10126 6.17733 6.24691 6.39589 6.41478 6.53174 6.72437 6.86176 7.21418 7.32583 7.72699 7.96925 8.49492 8.96894 9.54297 11.05778 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.004018 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.478333 B = 6967.666183 C = 7307.822589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.049 4.049 4 C 0.470 3.530 5 O -0.510 6.510 6 O -0.346 6.346 7 C 0.061 3.939 8 C -0.100 4.100 9 C -0.011 4.011 10 C -0.521 4.521 11 H 0.074 0.926 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.097 4.097 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.531 -6.712 14.280 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.149 4.149 3 C -0.050 4.050 4 C 0.313 3.687 5 O -0.398 6.398 6 O -0.263 6.263 7 C -0.012 4.012 8 C -0.138 4.138 9 C -0.048 4.048 10 C -0.559 4.559 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.706 3.294 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.146 4.146 19 C -0.164 4.164 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.573 -6.491 13.901 24.090 hybrid contribution 0.455 0.527 -0.981 1.203 sum 19.028 -5.964 12.920 23.761 Atomic orbital electron populations 1.22136 0.94277 1.01888 1.04360 1.21561 0.97536 0.93057 1.02718 1.20702 0.96687 0.95964 0.91661 1.23514 0.81149 0.77007 0.87013 1.90567 1.56706 1.45993 1.46565 1.86596 1.24806 1.69756 1.45110 1.23479 0.97983 0.95897 0.83870 1.21539 0.89072 1.02136 1.01019 1.19521 0.97773 0.95310 0.92225 1.21057 0.89300 1.36959 1.08596 0.90807 1.25010 0.94800 0.95610 0.97947 1.69911 1.08024 1.44495 1.31616 0.86792 0.80800 0.79378 0.82428 1.20199 1.21268 1.19011 1.21682 1.01912 0.95408 0.95615 1.21612 0.95962 0.96495 1.02321 1.21556 0.95447 1.00438 0.98212 1.21834 1.00148 0.95711 0.99685 1.21465 0.91544 0.98018 1.02387 0.92766 0.92134 0.89834 0.91613 0.90650 0.91727 0.91758 0.91615 0.91579 0.96352 0.96783 0.92653 0.89963 0.90594 0.91364 0.92127 0.92143 0.92108 0.92136 0.89292 0.90914 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.04 37.16 0.34 -1.45 16 2 C -0.11 -1.06 4.98 -26.73 -0.13 -1.19 16 3 C -0.05 -0.53 0.52 -155.66 -0.08 -0.61 16 4 C 0.47 6.82 4.97 36.00 0.18 7.00 16 5 O -0.51 -8.59 13.41 -18.75 -0.25 -8.84 16 6 O -0.35 -5.40 7.04 -39.26 -0.28 -5.67 16 7 C 0.06 1.06 5.47 37.16 0.20 1.26 16 8 C -0.10 -1.98 5.53 -26.73 -0.15 -2.12 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 14 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 18 C -0.11 -1.04 4.32 -26.73 -0.12 -1.16 16 19 C -0.13 -1.28 5.70 -26.73 -0.15 -1.43 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.14 -1.44 5.63 -26.70 -0.15 -1.59 16 22 C -0.10 -0.95 4.38 -26.70 -0.12 -1.07 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.60 6.43 -51.92 -0.33 0.26 16 25 H 0.08 1.08 5.32 -51.93 -0.28 0.81 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 0.83 6.40 -51.93 -0.33 0.50 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.75 7.22 -51.93 -0.37 0.38 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.19 5.52 -51.94 -0.29 0.90 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -30.81 334.15 -8.14 -38.95 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.87 Total: -2.29 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.88 Total: -17.27 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.53 Total: -14.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.81 -8.14 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764674740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.226 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds