Wall clock time and date at job start Mon Mar 30 2020 00:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 C 1.50698 * 109.47337 * 300.00240 * 3 2 1 5 5 O 1.20822 * 119.99804 * 240.00057 * 4 3 2 6 6 O 1.34231 * 120.00053 * 60.00042 * 4 3 2 7 7 C 1.45198 * 116.99983 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46884 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00162 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99868 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47023 * 90.00014 * 14 12 10 16 16 H 1.48496 * 109.47251 * 210.00457 * 14 12 10 17 17 H 1.48498 * 109.47139 * 330.00202 * 14 12 10 18 18 C 1.53000 * 109.47012 * 60.00450 * 3 2 1 19 19 C 1.52999 * 109.47492 * 180.02562 * 18 3 2 20 20 C 1.53005 * 109.47083 * 299.99788 * 19 18 3 21 21 C 1.53000 * 109.46784 * 59.99778 * 20 19 18 22 22 C 1.52999 * 109.47048 * 179.97438 * 3 2 1 23 23 H 1.08992 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47020 * 300.00107 * 1 2 3 25 25 H 1.09002 * 109.47180 * 59.99819 * 1 2 3 26 26 H 1.08998 * 109.47295 * 240.00377 * 2 1 3 27 27 H 1.08997 * 109.47549 * 119.99865 * 2 1 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 7 6 4 29 29 H 1.09001 * 109.46782 * 299.99696 * 7 6 4 30 30 H 1.09001 * 109.47194 * 299.99482 * 8 7 6 31 31 H 1.08992 * 109.47399 * 59.99654 * 8 7 6 32 32 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 33 33 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 34 34 H 0.96996 * 119.99309 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.46945 * 300.00099 * 18 3 2 36 36 H 1.09002 * 109.47368 * 59.99726 * 18 3 2 37 37 H 1.08998 * 109.47770 * 179.97438 * 19 18 3 38 38 H 1.09002 * 109.47066 * 59.99507 * 19 18 3 39 39 H 1.08999 * 109.47193 * 300.00256 * 20 19 18 40 40 H 1.08992 * 109.47235 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.46870 * 180.02562 * 21 20 19 42 42 H 1.08989 * 109.47580 * 60.00036 * 21 20 19 43 43 H 1.09002 * 109.47180 * 300.00181 * 22 3 2 44 44 H 1.08998 * 109.47295 * 60.00377 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 -1.2304 5 8 2.3228 2.6122 -2.0257 6 8 0.2179 2.2757 -1.4428 7 6 -0.1938 2.9714 -2.6489 8 6 -1.7217 3.0110 -2.7184 9 6 -2.1555 3.7436 -3.9896 10 6 -3.6604 3.7820 -4.0585 11 1 -4.2487 3.3289 -3.2742 12 6 -4.2864 4.3957 -5.1227 13 7 -5.5998 4.4288 -5.1831 14 14 -3.2691 5.1801 -6.4789 15 1 -2.9979 4.1755 -7.5384 16 1 -4.0171 6.3234 -7.0605 17 1 -1.9834 5.6650 -5.9158 18 6 1.5301 2.1637 1.2493 19 6 2.0395 3.6064 1.2491 20 6 3.5695 3.6071 1.2487 21 6 4.0794 2.8859 -0.0006 22 6 3.5700 1.4425 0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.1959 2.4474 -3.5216 29 1 0.1960 3.9892 -2.6321 30 1 -2.1111 1.9931 -2.7354 31 1 -2.1117 3.5347 -1.8457 32 1 -1.7661 4.7615 -3.9732 33 1 -1.7655 3.2194 -4.8622 34 1 -6.0401 4.8609 -5.9316 35 1 0.4400 2.1637 1.2494 36 1 1.8934 1.6499 2.1393 37 1 1.6758 4.1204 2.1389 38 1 1.6757 4.1200 0.3591 39 1 3.9333 3.0934 2.1386 40 1 3.9324 4.6348 1.2481 41 1 5.1695 2.8859 -0.0006 42 1 3.7157 3.3994 -0.8905 43 1 3.9330 0.9288 0.8909 44 1 3.9337 0.9287 -0.8891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764674740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:57 Heat of formation + Delta-G solvation = -143.932371 kcal Electronic energy + Delta-G solvation = -21567.055833 eV Core-core repulsion = 18482.225210 eV Total energy + Delta-G solvation = -3084.830623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24126 -39.32031 -37.60252 -36.00502 -35.01626 -33.82611 -31.73401 -30.12277 -29.44192 -25.72749 -24.90661 -23.72049 -23.24934 -22.11202 -21.42207 -20.44370 -19.03312 -18.20812 -17.90274 -16.92511 -16.41048 -16.20282 -15.76325 -15.24870 -14.89239 -14.85700 -14.80198 -14.54067 -14.13792 -13.98735 -13.79722 -13.52167 -13.06529 -13.02339 -12.90202 -12.67991 -12.46674 -12.27618 -12.09628 -11.97879 -11.94420 -11.80546 -11.75369 -11.54065 -11.41114 -11.29622 -11.01080 -10.90087 -10.83153 -10.79409 -8.32116 -6.36987 1.22045 1.34574 1.36111 1.47794 1.70446 2.33647 3.02953 3.45316 3.62273 3.67080 3.94939 3.97284 4.02446 4.12603 4.21136 4.30917 4.36030 4.43818 4.50218 4.57024 4.65318 4.70657 4.71430 4.75291 4.83877 4.91897 4.93921 5.04424 5.09449 5.14192 5.18377 5.23897 5.26673 5.30642 5.37239 5.41272 5.45693 5.46188 5.59338 5.61515 5.74088 6.23949 6.69890 6.79105 7.27591 8.84475 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.004018 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.478333 B = 6967.666183 C = 7307.822589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.046 4.046 4 C 0.464 3.536 5 O -0.537 6.537 6 O -0.346 6.346 7 C 0.070 3.930 8 C -0.089 4.089 9 C -0.009 4.009 10 C -0.534 4.534 11 H 0.036 0.964 12 C 0.007 3.993 13 N -0.948 5.948 14 Si 0.948 3.052 15 H -0.265 1.265 16 H -0.281 1.281 17 H -0.249 1.249 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.139 4.139 22 C -0.095 4.095 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.970 -7.399 15.544 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.144 4.144 3 C -0.047 4.047 4 C 0.309 3.691 5 O -0.427 6.427 6 O -0.262 6.262 7 C -0.003 4.003 8 C -0.126 4.126 9 C -0.047 4.047 10 C -0.572 4.572 11 H 0.055 0.945 12 C -0.190 4.190 13 N -0.589 5.589 14 Si 0.771 3.229 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.173 1.173 18 C -0.144 4.144 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.176 4.176 22 C -0.132 4.132 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.024 -7.190 15.183 26.911 hybrid contribution -0.344 0.708 -1.301 1.520 sum 20.680 -6.481 13.882 25.737 Atomic orbital electron populations 1.22122 0.95264 1.02178 1.03194 1.21594 0.96567 0.92173 1.04113 1.20901 0.97399 0.96357 0.90009 1.24501 0.80183 0.76493 0.87934 1.90564 1.57034 1.47209 1.47846 1.86634 1.26046 1.69518 1.44049 1.23113 0.96085 0.96161 0.84965 1.21282 0.90952 1.01359 0.99040 1.19447 0.94611 0.96174 0.94438 1.21387 0.91719 1.36405 1.07647 0.94532 1.25970 0.95953 0.96253 1.00798 1.70056 1.10068 1.45875 1.32877 0.85692 0.79543 0.78607 0.79045 1.19019 1.20706 1.17273 1.21727 1.01499 0.95105 0.96046 1.21639 0.96788 0.96838 1.01374 1.21543 0.94578 1.00625 0.98467 1.21808 1.00879 0.96085 0.98840 1.21517 0.90523 0.97666 1.03501 0.91770 0.91482 0.92749 0.92056 0.87349 0.91662 0.91941 0.91819 0.91946 0.95918 0.95950 0.92351 0.90778 0.87352 0.89995 0.95423 0.89599 0.92235 0.90945 0.92841 0.87582 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.04 71.98 0.65 -2.67 16 2 C -0.11 -1.74 4.98 30.60 0.15 -1.59 16 3 C -0.05 -0.89 0.52 -52.93 -0.03 -0.92 16 4 C 0.46 13.34 4.97 71.24 0.35 13.69 16 5 O -0.54 -18.28 13.41 21.98 0.29 -17.99 16 6 O -0.35 -10.83 7.04 -51.42 -0.36 -11.19 16 7 C 0.07 2.46 5.47 71.98 0.39 2.85 16 8 C -0.09 -3.54 5.53 30.59 0.17 -3.37 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 11 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 12 C 0.01 0.44 5.47 84.65 0.46 0.90 16 13 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 14 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.25 -10.99 6.54 99.48 0.65 -10.33 16 18 C -0.11 -1.76 4.32 30.59 0.13 -1.63 16 19 C -0.13 -2.39 5.70 30.60 0.17 -2.22 16 20 C -0.11 -1.85 5.92 30.60 0.18 -1.66 16 21 C -0.14 -2.70 5.63 30.61 0.17 -2.52 16 22 C -0.09 -1.62 4.38 30.61 0.13 -1.48 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.20 6.43 -2.38 -0.02 1.18 16 25 H 0.05 1.39 5.32 -2.39 -0.01 1.38 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 29 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 33 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 34 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.07 1.36 6.40 -2.39 -0.02 1.35 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.03 0.68 7.22 -2.39 -0.02 0.66 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.05 1.44 5.52 -2.39 -0.01 1.43 16 43 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -68.47 334.15 6.32 -62.15 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.89 Total: 11.74 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 3.32 Total: -31.77 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.07 Total: -29.18 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -68.47 6.32 -62.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764674740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.785 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds