Wall clock time and date at job start Mon Mar 30 2020 00:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99882 * 2 1 3 5 5 O 1.20822 * 119.99958 * 120.00049 * 4 2 1 6 6 O 1.34234 * 120.00068 * 300.00240 * 4 2 1 7 7 C 1.45196 * 116.99938 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47070 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47221 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00171 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00377 * 179.97438 * 11 9 8 13 13 Si 1.86810 * 119.99898 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47093 * 90.00118 * 13 11 9 15 15 H 1.48500 * 109.46823 * 210.00246 * 13 11 9 16 16 H 1.48499 * 109.46973 * 329.99936 * 13 11 9 17 17 C 1.52992 * 109.47195 * 240.00008 * 2 1 3 18 18 C 1.52997 * 109.47296 * 299.99941 * 17 2 1 19 19 C 1.53004 * 109.47448 * 180.02562 * 18 17 2 20 20 C 1.52995 * 109.46969 * 59.99606 * 19 18 17 21 21 C 1.52997 * 109.47357 * 300.00449 * 20 19 18 22 22 C 1.52992 * 109.47296 * 60.00111 * 21 20 19 23 23 H 1.08998 * 109.47453 * 300.00086 * 1 2 3 24 24 H 1.08996 * 109.47248 * 60.00411 * 1 2 3 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46948 * 299.99772 * 3 2 1 28 28 H 1.08996 * 109.46989 * 60.00261 * 3 2 1 29 29 H 1.08996 * 109.47465 * 299.99911 * 7 6 4 30 30 H 1.08999 * 109.47008 * 59.99921 * 7 6 4 31 31 H 1.08998 * 109.47592 * 300.00297 * 8 7 6 32 32 H 1.08999 * 109.47084 * 60.00195 * 8 7 6 33 33 H 0.96994 * 120.00157 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47365 * 59.99652 * 17 2 1 35 35 H 1.09005 * 109.47269 * 300.00171 * 18 17 2 36 36 H 1.08997 * 109.47440 * 60.00077 * 18 17 2 37 37 H 1.09005 * 109.46802 * 299.99630 * 19 18 17 38 38 H 1.09000 * 109.47266 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47085 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.46881 * 60.00626 * 20 19 18 41 41 H 1.08996 * 109.47130 * 299.99695 * 21 20 19 42 42 H 1.09004 * 109.46869 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.47279 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47370 * 59.99731 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4497 7 6 2.2267 -0.9863 3.5897 8 6 1.7556 -0.3190 4.8834 9 6 2.2945 -1.0810 6.0667 10 1 2.9108 -1.9541 5.9115 11 6 1.9997 -0.6641 7.3474 12 7 2.4695 -1.3293 8.3801 13 14 0.9330 0.8458 7.6159 14 1 -0.4932 0.4380 7.6869 15 1 1.3226 1.5073 8.8871 16 1 1.1217 1.7922 6.4873 17 6 2.0400 -0.7212 -1.2492 18 6 1.5301 -2.1637 -1.2492 19 6 2.0406 -2.8852 -2.4981 20 6 3.5706 -2.8851 -2.4975 21 6 4.0805 -1.4426 -2.4975 22 6 3.5700 -0.7212 -1.2486 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.8625 -2.0131 3.5566 30 1 3.3161 -0.9860 3.5569 31 1 2.1201 0.7077 4.9163 32 1 0.6662 -0.3190 4.9164 33 1 2.2618 -1.0362 9.2810 34 1 1.6767 -0.2075 -2.1392 35 1 1.8934 -2.6776 -0.3592 36 1 0.4401 -2.1638 -1.2492 37 1 1.6776 -2.3715 -3.3884 38 1 1.6769 -3.9127 -2.4984 39 1 3.9343 -3.3986 -3.3875 40 1 3.9335 -3.3988 -1.6073 41 1 3.7176 -0.9289 -3.3877 42 1 5.1705 -1.4426 -2.4975 43 1 3.9330 0.3066 -1.2488 44 1 3.9330 -1.2349 -0.3584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767042544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:03 Heat of formation + Delta-G solvation = -125.872888 kcal Electronic energy + Delta-G solvation = -21641.711925 eV Core-core repulsion = 18557.664420 eV Total energy + Delta-G solvation = -3084.047505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91892 -38.47715 -36.02956 -35.19537 -33.28030 -30.93265 -30.76475 -29.47807 -27.41282 -25.53720 -23.75179 -22.39501 -22.35325 -20.64697 -19.91114 -19.34996 -17.21188 -16.37591 -16.15796 -16.00398 -15.26652 -14.28795 -14.25412 -14.05822 -13.90480 -13.89034 -13.36513 -13.32515 -12.93725 -12.59712 -12.42741 -12.25963 -12.02168 -11.73502 -11.61971 -11.35948 -11.30081 -11.28336 -11.05915 -10.89874 -10.66722 -10.51205 -10.33611 -10.00638 -9.94371 -9.90280 -9.64876 -9.46258 -9.32149 -8.62755 -6.13300 -4.14426 2.55316 3.14626 3.27304 3.34709 3.39063 4.38132 4.40003 4.56203 4.72040 4.84040 4.98661 5.00662 5.20334 5.24038 5.28058 5.30927 5.51085 5.52631 5.55231 5.56679 5.61421 5.71755 5.73182 5.76479 5.89319 5.92793 5.98199 5.98447 6.03150 6.11003 6.17944 6.18851 6.29900 6.33530 6.41140 6.46256 6.52722 6.92701 7.21491 7.25783 7.62613 8.21903 8.39579 8.88456 9.46412 10.99344 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.004131 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.030013 B = 6776.791511 C = 7148.532874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.144 4.144 4 C 0.464 3.536 5 O -0.504 6.504 6 O -0.359 6.359 7 C 0.082 3.918 8 C -0.009 4.009 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.881 3.119 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.060 4.060 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.134 4.134 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 3.238 -23.024 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.053 4.053 3 C -0.201 4.201 4 C 0.308 3.692 5 O -0.394 6.394 6 O -0.275 6.275 7 C 0.010 3.990 8 C -0.046 4.046 9 C -0.565 4.565 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.708 3.292 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.079 4.079 18 C -0.171 4.171 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.171 4.171 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.044 2.935 -22.794 23.073 hybrid contribution -0.442 0.585 0.373 0.823 sum -2.486 3.521 -22.422 22.832 Atomic orbital electron populations 1.21912 0.92003 1.02952 1.03199 1.20587 0.97612 0.96514 0.90632 1.21912 1.01769 0.93187 1.03199 1.23480 0.77590 0.82774 0.85394 1.90508 1.35720 1.26061 1.87072 1.86484 1.69498 1.56302 1.15230 1.23341 0.98425 0.95182 0.82097 1.19610 0.97236 0.97245 0.90530 1.20852 1.33116 1.13723 0.88830 0.90696 1.24936 0.95495 0.96789 0.95766 1.69894 1.45099 1.39997 0.98556 0.86755 0.80985 0.83596 0.77897 1.20056 1.21168 1.18767 1.21016 0.96127 0.95862 0.94848 1.21955 0.99734 0.95396 0.99988 1.21464 0.95733 1.00014 0.97888 1.21521 0.95776 0.96831 1.01560 1.21462 0.99894 0.95855 0.97889 1.21954 0.94683 1.00445 0.99988 0.91037 0.91385 0.91818 0.91816 0.91384 0.91036 0.91868 0.91847 0.95461 0.95894 0.92439 0.90599 0.89083 0.92385 0.92653 0.92370 0.92684 0.91648 0.92652 0.92371 0.92386 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.05 37.16 0.30 -1.23 16 2 C -0.05 -0.63 0.53 -155.66 -0.08 -0.72 16 3 C -0.14 -1.53 8.05 37.16 0.30 -1.23 16 4 C 0.46 7.63 5.97 36.01 0.21 7.84 16 5 O -0.50 -9.16 11.10 -18.75 -0.21 -9.37 16 6 O -0.36 -6.75 10.03 -39.27 -0.39 -7.14 16 7 C 0.08 1.76 5.40 37.16 0.20 1.96 16 8 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 9 C -0.53 -15.04 9.66 -34.44 -0.33 -15.37 16 10 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 13 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 17 C -0.06 -0.66 1.52 -90.62 -0.14 -0.80 16 18 C -0.13 -1.55 4.55 -26.73 -0.12 -1.67 16 19 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 20 C -0.12 -1.23 5.92 -26.74 -0.16 -1.38 16 21 C -0.11 -1.14 5.92 -26.74 -0.16 -1.30 16 22 C -0.13 -1.55 4.55 -26.73 -0.12 -1.67 16 23 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 26 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.06 1.37 8.13 -51.93 -0.42 0.94 16 30 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.32 5.52 -51.93 -0.29 1.04 16 36 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 44 H 0.09 1.33 5.51 -51.93 -0.29 1.04 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -30.30 332.85 -7.71 -38.01 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.75 Total: -1.41 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.48 Total: -15.21 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.60 Total: -16.51 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.30 -7.71 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767042544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.859 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds