Wall clock time and date at job start Mon Mar 30 2020 00:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99882 * 2 1 3 5 5 O 1.20822 * 119.99958 * 120.00049 * 4 2 1 6 6 O 1.34234 * 120.00068 * 300.00240 * 4 2 1 7 7 C 1.45196 * 116.99938 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47070 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47221 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00171 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00377 * 179.97438 * 11 9 8 13 13 Si 1.86810 * 119.99898 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47093 * 90.00118 * 13 11 9 15 15 H 1.48500 * 109.46823 * 210.00246 * 13 11 9 16 16 H 1.48499 * 109.46973 * 329.99936 * 13 11 9 17 17 C 1.52992 * 109.47195 * 240.00008 * 2 1 3 18 18 C 1.52997 * 109.47296 * 299.99941 * 17 2 1 19 19 C 1.53004 * 109.47448 * 180.02562 * 18 17 2 20 20 C 1.52995 * 109.46969 * 59.99606 * 19 18 17 21 21 C 1.52997 * 109.47357 * 300.00449 * 20 19 18 22 22 C 1.52992 * 109.47296 * 60.00111 * 21 20 19 23 23 H 1.08998 * 109.47453 * 300.00086 * 1 2 3 24 24 H 1.08996 * 109.47248 * 60.00411 * 1 2 3 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46948 * 299.99772 * 3 2 1 28 28 H 1.08996 * 109.46989 * 60.00261 * 3 2 1 29 29 H 1.08996 * 109.47465 * 299.99911 * 7 6 4 30 30 H 1.08999 * 109.47008 * 59.99921 * 7 6 4 31 31 H 1.08998 * 109.47592 * 300.00297 * 8 7 6 32 32 H 1.08999 * 109.47084 * 60.00195 * 8 7 6 33 33 H 0.96994 * 120.00157 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47365 * 59.99652 * 17 2 1 35 35 H 1.09005 * 109.47269 * 300.00171 * 18 17 2 36 36 H 1.08997 * 109.47440 * 60.00077 * 18 17 2 37 37 H 1.09005 * 109.46802 * 299.99630 * 19 18 17 38 38 H 1.09000 * 109.47266 * 180.02562 * 19 18 17 39 39 H 1.08998 * 109.47085 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.46881 * 60.00626 * 20 19 18 41 41 H 1.08996 * 109.47130 * 299.99695 * 21 20 19 42 42 H 1.09004 * 109.46869 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.47279 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47370 * 59.99731 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4497 7 6 2.2267 -0.9863 3.5897 8 6 1.7556 -0.3190 4.8834 9 6 2.2945 -1.0810 6.0667 10 1 2.9108 -1.9541 5.9115 11 6 1.9997 -0.6641 7.3474 12 7 2.4695 -1.3293 8.3801 13 14 0.9330 0.8458 7.6159 14 1 -0.4932 0.4380 7.6869 15 1 1.3226 1.5073 8.8871 16 1 1.1217 1.7922 6.4873 17 6 2.0400 -0.7212 -1.2492 18 6 1.5301 -2.1637 -1.2492 19 6 2.0406 -2.8852 -2.4981 20 6 3.5706 -2.8851 -2.4975 21 6 4.0805 -1.4426 -2.4975 22 6 3.5700 -0.7212 -1.2486 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.8625 -2.0131 3.5566 30 1 3.3161 -0.9860 3.5569 31 1 2.1201 0.7077 4.9163 32 1 0.6662 -0.3190 4.9164 33 1 2.2618 -1.0362 9.2810 34 1 1.6767 -0.2075 -2.1392 35 1 1.8934 -2.6776 -0.3592 36 1 0.4401 -2.1638 -1.2492 37 1 1.6776 -2.3715 -3.3884 38 1 1.6769 -3.9127 -2.4984 39 1 3.9343 -3.3986 -3.3875 40 1 3.9335 -3.3988 -1.6073 41 1 3.7176 -0.9289 -3.3877 42 1 5.1705 -1.4426 -2.4975 43 1 3.9330 0.3066 -1.2488 44 1 3.9330 -1.2349 -0.3584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767042544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:02 Heat of formation + Delta-G solvation = -141.645157 kcal Electronic energy + Delta-G solvation = -21642.395862 eV Core-core repulsion = 18557.664420 eV Total energy + Delta-G solvation = -3084.731442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12775 -39.62232 -37.44631 -36.16274 -35.36621 -32.76939 -31.78000 -30.37603 -28.22533 -27.41659 -24.91892 -23.56338 -23.19728 -22.52502 -20.79405 -20.57885 -19.10914 -18.00735 -17.50586 -17.19228 -16.35622 -16.24258 -15.40336 -15.15294 -15.08540 -14.92656 -14.67534 -14.36613 -14.15887 -14.06607 -13.40475 -13.28472 -13.25175 -13.02939 -12.95882 -12.57973 -12.53233 -12.42522 -12.19470 -12.14018 -11.93189 -11.85081 -11.73533 -11.57499 -11.48293 -11.31058 -10.86474 -10.83084 -10.73619 -10.65228 -8.36317 -6.44862 1.24939 1.36636 1.38512 1.51349 1.78173 2.32909 2.98469 3.43642 3.69274 3.75775 3.93168 4.02527 4.13034 4.17895 4.18417 4.32362 4.43484 4.47253 4.60278 4.69220 4.69458 4.72737 4.76224 4.80952 4.87338 4.89042 4.93887 5.03316 5.08523 5.11957 5.22748 5.26486 5.30576 5.31816 5.35086 5.44777 5.46151 5.49706 5.51239 5.53852 5.86632 6.13561 6.61024 6.83397 7.20488 8.79972 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.004131 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.030013 B = 6776.791511 C = 7148.532874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C 0.455 3.545 5 O -0.526 6.526 6 O -0.361 6.361 7 C 0.095 3.905 8 C -0.001 4.001 9 C -0.544 4.544 10 H 0.033 0.967 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.955 3.045 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.244 1.244 17 C -0.056 4.056 18 C -0.135 4.135 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.135 4.135 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 5.738 -25.787 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.199 4.199 4 C 0.299 3.701 5 O -0.415 6.415 6 O -0.277 6.277 7 C 0.021 3.979 8 C -0.039 4.039 9 C -0.582 4.582 10 H 0.051 0.949 11 C -0.186 4.186 12 N -0.584 5.584 13 Si 0.777 3.223 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.167 1.167 17 C -0.074 4.074 18 C -0.172 4.172 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.172 4.172 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.828 5.426 -25.585 26.432 hybrid contribution 0.203 -0.317 1.193 1.251 sum -3.626 5.109 -24.392 25.183 Atomic orbital electron populations 1.21953 0.90433 1.03024 1.04510 1.20807 0.98746 0.97001 0.88242 1.21952 1.01468 0.91998 1.04500 1.24666 0.77047 0.82793 0.85560 1.90535 1.36632 1.27212 1.87150 1.86479 1.69685 1.56037 1.15541 1.22849 0.97618 0.94632 0.82785 1.19434 0.97496 0.96894 0.90032 1.21122 1.32923 1.13116 0.91053 0.94904 1.25964 0.96945 1.00503 0.95153 1.70041 1.46802 1.42239 0.99325 0.85595 0.79058 0.79149 0.78517 1.18686 1.20473 1.16749 1.21075 0.95504 0.95528 0.95292 1.21917 1.00319 0.95798 0.99165 1.21458 0.95280 1.00178 0.97869 1.21534 0.96239 0.97129 1.00973 1.21455 0.99978 0.95483 0.97869 1.21916 0.95403 1.00716 0.99166 0.91868 0.87937 0.92399 0.92408 0.87930 0.91889 0.92967 0.92991 0.94733 0.94833 0.92005 0.87259 0.92915 0.91335 0.90353 0.92391 0.91074 0.94447 0.90351 0.92394 0.91344 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.05 71.98 0.58 -2.03 16 2 C -0.05 -1.04 0.53 -52.93 -0.03 -1.07 16 3 C -0.14 -2.62 8.05 71.98 0.58 -2.04 16 4 C 0.45 15.02 5.97 71.24 0.43 15.44 16 5 O -0.53 -19.99 11.10 21.98 0.24 -19.75 16 6 O -0.36 -13.60 10.03 -51.46 -0.52 -14.12 16 7 C 0.09 4.19 5.40 71.98 0.39 4.58 16 8 C 0.00 -0.05 4.42 29.85 0.13 0.08 16 9 C -0.54 -32.07 9.66 25.60 0.25 -31.83 16 10 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 11 C 0.01 0.73 5.47 84.65 0.46 1.19 16 12 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 13 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 17 C -0.06 -1.09 1.52 -10.80 -0.02 -1.10 16 18 C -0.13 -2.96 4.55 30.59 0.14 -2.82 16 19 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 20 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 21 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 22 C -0.13 -2.96 4.55 30.59 0.14 -2.82 16 23 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.13 6.43 -2.38 -0.02 1.11 16 26 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 29 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 30 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 31 H 0.03 1.63 7.20 -2.39 -0.02 1.61 16 32 H 0.03 1.56 7.57 -2.39 -0.02 1.54 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.58 5.52 -2.38 -0.01 1.57 16 36 H 0.07 1.33 6.43 -2.39 -0.02 1.32 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.07 1.33 6.43 -2.39 -0.02 1.32 16 44 H 0.05 1.58 5.51 -2.39 -0.01 1.57 16 Total: -1.00 -68.54 332.85 6.40 -62.14 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.90 Total: 13.35 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.59 Total: -28.24 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.27 Total: -33.87 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -68.54 6.40 -62.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767042544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.510 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds