Wall clock time and date at job start Mon Mar 30 2020 00:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.46626 * 119.99539 * 2 1 3 6 6 C 1.53002 * 109.47302 * 60.00257 * 5 2 1 7 7 C 1.52993 * 109.47392 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47024 * 60.00071 * 7 6 5 9 9 C 1.53006 * 109.47164 * 60.00057 * 8 7 6 10 10 C 1.50695 * 109.47196 * 175.00240 * 9 8 7 11 11 O 1.21212 * 120.00268 * 359.97438 * 10 9 8 12 12 O 1.34310 * 120.00216 * 179.97438 * 10 9 8 13 13 C 1.34916 * 117.00386 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99872 * 0.02562 * 13 12 10 15 15 C 1.38756 * 120.00137 * 180.02562 * 13 12 10 16 16 N 1.31440 * 119.99921 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47153 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47384 * 120.00088 * 17 15 13 20 20 H 1.48499 * 109.47391 * 239.99876 * 17 15 13 21 21 C 1.52997 * 109.47232 * 299.99958 * 8 7 6 22 22 C 1.52997 * 109.47592 * 300.00035 * 5 2 1 23 23 H 1.09004 * 109.47297 * 300.00280 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 28 28 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 29 29 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 30 30 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 5 2 1 33 33 H 1.09004 * 109.47006 * 59.99583 * 6 5 2 34 34 H 1.09002 * 109.46838 * 300.00086 * 6 5 2 35 35 H 1.09002 * 109.47722 * 300.00185 * 7 6 5 36 36 H 1.09000 * 109.47250 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 38 38 H 1.09007 * 109.46744 * 294.99886 * 9 8 7 39 39 H 1.08995 * 109.46794 * 55.00131 * 9 8 7 40 40 H 0.97000 * 119.99708 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.47261 * 179.97438 * 21 8 7 42 42 H 1.09002 * 109.47153 * 299.99992 * 21 8 7 43 43 H 1.09000 * 109.47140 * 300.00346 * 22 5 2 44 44 H 1.09002 * 109.47045 * 60.00253 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0403 -2.8850 2.4984 8 6 1.5307 -2.1639 3.7478 9 6 0.0006 -2.1639 3.7483 10 6 -0.5013 -1.5635 5.0361 11 8 0.2866 -1.1746 5.8711 12 8 -1.8217 -1.4593 5.2588 13 6 -2.2039 -0.9131 6.4317 14 1 -1.4599 -0.5826 7.1413 15 6 -3.5529 -0.7760 6.7263 16 7 -4.4584 -1.1787 5.8629 17 14 -4.0821 -0.0191 8.3500 18 1 -2.8796 0.3499 9.1394 19 1 -4.8939 1.1965 8.0883 20 1 -4.8935 -1.0013 9.1129 21 6 2.0407 -0.7214 3.7478 22 6 1.5299 0.0001 2.4985 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7216 -1.2489 32 1 3.1300 -0.7208 1.2496 33 1 1.8933 -2.6776 0.3594 34 1 0.4399 -2.1636 1.2493 35 1 3.1303 -2.8851 2.4981 36 1 1.6773 -3.9128 2.4982 37 1 1.8947 -2.6775 4.6377 38 1 -0.3629 -1.5743 2.9066 39 1 -0.3626 -3.1876 3.6588 40 1 -5.4014 -1.0825 6.0687 41 1 1.6772 -0.2075 4.6377 42 1 3.1307 -0.7214 3.7475 43 1 1.8933 1.0278 2.4985 44 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767513670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:13 Heat of formation + Delta-G solvation = -123.055107 kcal Electronic energy + Delta-G solvation = -21885.220209 eV Core-core repulsion = 18801.294892 eV Total energy + Delta-G solvation = -3083.925317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13284 -38.69554 -36.31282 -34.78776 -32.07931 -30.72690 -30.61378 -27.59885 -27.25543 -27.11448 -24.98588 -22.57232 -22.14821 -20.48193 -18.59930 -17.83898 -17.63807 -16.52694 -15.78569 -15.13132 -14.62599 -14.48380 -14.22494 -14.05232 -13.95861 -13.68521 -13.17512 -13.12198 -12.53693 -12.23191 -12.08568 -11.98440 -11.81846 -11.68550 -11.52970 -11.32110 -11.19614 -11.03517 -10.94735 -10.67781 -10.58952 -10.43686 -10.35941 -10.29978 -9.84801 -9.67566 -9.60041 -9.57026 -8.78808 -8.51653 -6.35276 -4.02618 3.13700 3.22007 3.29500 3.63867 4.00981 4.59635 4.69640 4.77703 4.81558 5.03016 5.14100 5.20517 5.27539 5.40202 5.51359 5.55497 5.59731 5.66426 5.68956 5.73911 5.77548 5.81252 5.84678 5.94060 5.96662 6.00901 6.04949 6.10469 6.13246 6.20349 6.23204 6.30477 6.37198 6.42742 6.49476 6.58897 6.69204 6.77884 6.86527 6.99980 7.46878 8.02971 8.82051 9.14306 9.95974 10.83254 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004608 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.343921 B = 6075.545019 C = 6436.640258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.072 4.072 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.070 4.070 9 C -0.103 4.103 10 C 0.399 3.601 11 O -0.555 6.555 12 O -0.220 6.220 13 C -0.380 4.380 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.868 5.868 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.120 4.120 22 C -0.121 4.121 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 0.215 -12.750 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.091 4.091 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.141 4.141 10 C 0.246 3.754 11 O -0.452 6.452 12 O -0.127 6.127 13 C -0.456 4.456 14 H 0.112 0.888 15 C -0.163 4.163 16 N -0.505 5.505 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.157 4.157 22 C -0.158 4.158 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.457 0.310 -12.552 16.997 hybrid contribution -0.359 0.334 0.755 0.900 sum 11.098 0.644 -11.797 16.210 Atomic orbital electron populations 1.22009 0.94555 1.02147 1.01802 1.20548 0.95818 0.95184 0.94963 1.21926 1.00573 0.95822 1.01720 1.21919 1.00573 1.00458 0.96936 1.21155 0.99576 0.94597 0.93734 1.21757 1.01518 0.95164 0.97355 1.21576 1.00246 0.98697 0.94504 1.20859 0.93337 0.96898 0.97720 1.21290 0.95834 1.01972 0.94959 1.23299 0.82581 0.80459 0.89072 1.90500 1.56866 1.50201 1.47635 1.83890 1.22296 1.67782 1.38726 1.21242 0.92036 1.39228 0.93117 0.88793 1.25305 0.94572 0.97062 0.99346 1.70003 1.01080 1.44522 1.34931 0.85660 0.78927 0.78562 0.80388 1.19014 1.20250 1.20244 1.21679 0.99466 0.95530 0.99008 1.21782 1.01500 0.98643 0.93911 0.91976 0.93203 0.92237 0.93031 0.93119 0.92151 0.92356 0.93127 0.93047 0.91709 0.92201 0.91181 0.92140 0.92150 0.90770 0.88864 0.89607 0.92276 0.89578 0.92929 0.92233 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.77 37.16 0.29 -1.38 16 2 C -0.07 -0.68 0.57 -154.51 -0.09 -0.77 16 3 C -0.14 -1.44 8.12 37.16 0.30 -1.13 16 4 C -0.14 -1.29 8.12 37.16 0.30 -0.99 16 5 C -0.07 -0.82 1.55 -90.62 -0.14 -0.96 16 6 C -0.12 -1.37 4.22 -26.73 -0.11 -1.48 16 7 C -0.11 -1.37 5.45 -26.74 -0.15 -1.52 16 8 C -0.07 -1.09 2.31 -90.62 -0.21 -1.30 16 9 C -0.10 -1.87 4.58 -27.88 -0.13 -2.00 16 10 C 0.40 9.84 7.62 36.00 0.27 10.11 16 11 O -0.55 -14.62 13.20 -19.05 -0.25 -14.88 16 12 O -0.22 -6.38 9.75 -20.69 -0.20 -6.58 16 13 C -0.38 -11.41 9.65 30.92 0.30 -11.11 16 14 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 15 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 16 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 17 Si 0.94 21.66 29.55 -169.99 -5.02 16.63 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.12 -1.87 5.19 -26.71 -0.14 -2.01 16 22 C -0.12 -1.67 4.23 -26.71 -0.11 -1.79 16 23 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 29 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 34 H 0.07 0.85 4.83 -51.93 -0.25 0.60 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 38 H 0.09 1.60 4.83 -51.93 -0.25 1.35 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.09 1.66 5.95 -51.93 -0.31 1.35 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 44 H 0.07 1.06 4.61 -51.93 -0.24 0.83 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -31.91 325.70 -6.71 -38.62 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.19 Total: 1.65 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 0.29 Total: -15.27 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.76 Total: -25.08 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.45 Total: -21.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.91 -6.71 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767513670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.437 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds