Wall clock time and date at job start Mon Mar 30 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.20828 * 120.00136 * 120.00215 * 7 6 5 9 9 O 1.34234 * 119.99749 * 299.99620 * 7 6 5 10 10 C 1.45206 * 116.99844 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47044 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99940 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00144 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00236 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46873 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47386 * 119.99082 * 17 15 13 20 20 H 1.48504 * 109.47251 * 239.99742 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08996 * 109.46598 * 300.00309 * 10 9 7 35 35 H 1.09003 * 109.46732 * 60.00033 * 10 9 7 36 36 H 1.08999 * 109.47259 * 300.00068 * 11 10 9 37 37 H 1.09002 * 109.46790 * 59.99977 * 11 10 9 38 38 H 1.08999 * 109.47403 * 300.00246 * 12 11 10 39 39 H 1.09002 * 109.46918 * 59.99981 * 12 11 10 40 40 H 0.96997 * 120.00283 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 8 6.1913 -0.9169 0.9060 9 8 6.2591 -2.0213 -1.0070 10 6 7.7091 -1.9828 -0.9409 11 6 8.2944 -2.6898 -2.1650 12 6 9.8223 -2.6487 -2.0957 13 6 10.3987 -3.3445 -3.3017 14 1 9.7411 -3.7736 -4.0433 15 6 11.7656 -3.4343 -3.4580 16 7 12.5664 -2.9122 -2.5547 17 14 12.4802 -4.2975 -4.9525 18 1 11.3759 -4.7950 -5.8118 19 1 13.3159 -3.3422 -5.7235 20 1 13.3168 -5.4420 -4.5102 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 8.0446 -0.9459 -0.9248 35 1 8.0450 -2.4875 -0.0351 36 1 7.9588 -3.7267 -2.1807 37 1 7.9583 -2.1855 -3.0710 38 1 10.1575 -1.6116 -2.0803 39 1 10.1585 -3.1527 -1.1896 40 1 13.5281 -2.9751 -2.6648 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768685403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:52 Heat of formation + Delta-G solvation = -139.159189 kcal Electronic energy + Delta-G solvation = -20602.172173 eV Core-core repulsion = 17517.548531 eV Total energy + Delta-G solvation = -3084.623642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71305 -39.18892 -36.42834 -34.02063 -33.60689 -31.67137 -31.06490 -27.79963 -27.59872 -26.67280 -23.61257 -22.94467 -22.27936 -20.43417 -20.09290 -18.70955 -17.35630 -16.61483 -16.24674 -16.00218 -15.31608 -15.11149 -14.47020 -14.31889 -14.13350 -13.60208 -13.52320 -13.13667 -12.63384 -12.53382 -12.21504 -12.15117 -12.04151 -11.98296 -11.87694 -11.65604 -11.26045 -11.22759 -10.98085 -10.74722 -10.63679 -10.58687 -10.45993 -10.34462 -10.21593 -10.11095 -9.70863 -9.47656 -9.14311 -8.39040 -6.03518 -4.06487 2.39293 2.94155 3.30025 3.37407 3.41824 4.30050 4.38927 4.41901 4.45938 4.70775 4.77835 4.98358 5.07665 5.10459 5.22360 5.25729 5.32314 5.32508 5.39838 5.51288 5.57837 5.60088 5.63666 5.65045 5.67008 5.79137 5.81300 5.83951 5.92173 5.98321 6.04204 6.04661 6.16339 6.28795 6.55143 6.55316 6.88058 7.00196 7.60865 7.71808 7.94872 7.99717 8.36348 9.00105 9.57857 11.08019 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044515 B = 0.002855 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.846452 B = 9805.121651 C =10134.939730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.078 4.078 7 C 0.459 3.541 8 O -0.513 6.513 9 O -0.357 6.357 10 C 0.067 3.933 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.106 4.106 22 C -0.106 4.106 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.736 5.699 5.720 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.097 4.097 7 C 0.301 3.699 8 O -0.402 6.402 9 O -0.274 6.274 10 C -0.006 4.006 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.144 4.144 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.324 5.870 6.012 25.734 hybrid contribution 0.753 -0.432 -0.642 1.079 sum -23.571 5.438 5.370 24.780 Atomic orbital electron populations 1.21856 0.94570 1.01695 1.01677 1.20592 0.95212 0.95753 0.95344 1.21997 1.01756 0.95137 1.01545 1.21595 0.94580 1.00758 0.97386 1.21578 0.96026 1.01132 0.96438 1.21074 0.87420 1.02944 0.98297 1.23694 0.91533 0.74910 0.79720 1.90645 1.70757 1.42437 1.36353 1.86501 1.23858 1.70760 1.46247 1.23483 0.73816 1.01830 1.01439 1.21752 0.99172 0.99369 0.94300 1.19058 0.86926 0.97686 0.97712 1.21213 0.91542 1.36169 1.06925 0.92378 1.25038 0.97266 0.95671 0.96558 1.69977 1.03481 1.45320 1.34617 0.86492 0.79116 0.79339 0.82802 1.19660 1.20964 1.20971 1.21486 0.95214 1.01618 0.96067 1.21606 0.94744 1.00627 0.97413 0.92731 0.92678 0.92675 0.91874 0.92742 0.92789 0.91548 0.91401 0.91071 0.90226 0.87655 0.91630 0.91637 0.92186 0.92184 0.96251 0.96257 0.92947 0.90646 0.91076 0.91482 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.48 37.16 0.31 -0.54 16 2 C -0.07 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.15 -1.10 7.78 37.16 0.29 -0.81 16 4 C -0.11 -0.80 4.73 -26.73 -0.13 -0.92 16 5 C -0.11 -1.09 4.86 -26.73 -0.13 -1.22 16 6 C -0.08 -0.85 2.63 -91.77 -0.24 -1.09 16 7 C 0.46 7.07 7.25 36.00 0.26 7.33 16 8 O -0.51 -9.34 15.73 -18.75 -0.29 -9.64 16 9 O -0.36 -6.08 10.12 -39.27 -0.40 -6.48 16 10 C 0.07 1.28 5.47 37.16 0.20 1.48 16 11 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.11 -1.05 4.22 -26.73 -0.11 -1.16 16 22 C -0.11 -0.80 4.73 -26.73 -0.13 -0.93 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 32 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.81 6.38 -51.93 -0.33 0.48 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.09 346.12 -8.31 -39.39 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -8.06 Total: -4.83 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.49 Total: -14.02 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.69 Total: -16.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -8.31 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768685403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.766 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds