Wall clock time and date at job start Mon Mar 30 2020 00:37:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3
5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1
6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2
7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4
8 8 O 1.20828 * 120.00136 * 120.00215 * 7 6 5
9 9 O 1.34234 * 119.99749 * 299.99620 * 7 6 5
10 10 C 1.45206 * 116.99844 * 180.02562 * 9 7 6
11 11 C 1.52996 * 109.46850 * 179.97438 * 10 9 7
12 12 C 1.53002 * 109.46970 * 179.97438 * 11 10 9
13 13 C 1.50696 * 109.47044 * 180.02562 * 12 11 10
14 14 H 1.08006 * 120.00415 * 359.97438 * 13 12 11
15 15 C 1.37875 * 119.99940 * 180.02562 * 13 12 11
16 16 N 1.31517 * 120.00144 * 359.97438 * 15 13 12
17 17 Si 1.86801 * 120.00236 * 179.97438 * 15 13 12
18 18 H 1.48508 * 109.46873 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47386 * 119.99082 * 17 15 13
20 20 H 1.48504 * 109.47251 * 239.99742 * 17 15 13
21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4
22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5
23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3
24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3
25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1
28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1
29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1
30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1
31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2
32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2
33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4
34 34 H 1.08996 * 109.46598 * 300.00309 * 10 9 7
35 35 H 1.09003 * 109.46732 * 60.00033 * 10 9 7
36 36 H 1.08999 * 109.47259 * 300.00068 * 11 10 9
37 37 H 1.09002 * 109.46790 * 59.99977 * 11 10 9
38 38 H 1.08999 * 109.47403 * 300.00246 * 12 11 10
39 39 H 1.09002 * 109.46918 * 59.99981 * 12 11 10
40 40 H 0.96997 * 120.00283 * 180.02562 * 16 15 13
41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5
42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5
43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6
44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5701 -0.7207 -1.2495
6 6 4.0806 -1.4416 -0.0003
7 6 5.5875 -1.4405 -0.0003
8 8 6.1913 -0.9169 0.9060
9 8 6.2591 -2.0213 -1.0070
10 6 7.7091 -1.9828 -0.9409
11 6 8.2944 -2.6898 -2.1650
12 6 9.8223 -2.6487 -2.0957
13 6 10.3987 -3.3445 -3.3017
14 1 9.7411 -3.7736 -4.0433
15 6 11.7656 -3.4343 -3.4580
16 7 12.5664 -2.9122 -2.5547
17 14 12.4802 -4.2975 -4.9525
18 1 11.3759 -4.7950 -5.8118
19 1 13.3159 -3.3422 -5.7235
20 1 13.3168 -5.4420 -4.5102
21 6 3.5705 -0.7204 1.2490
22 6 2.0405 -0.7209 1.2493
23 1 -0.3634 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 3.1300 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.6767 -1.7489 -1.2492
30 1 1.6768 -0.2074 -2.1392
31 1 3.9330 0.3071 -1.2497
32 1 3.9334 -1.2342 -2.1397
33 1 3.7176 -2.4693 0.0000
34 1 8.0446 -0.9459 -0.9248
35 1 8.0450 -2.4875 -0.0351
36 1 7.9588 -3.7267 -2.1807
37 1 7.9583 -2.1855 -3.0710
38 1 10.1575 -1.6116 -2.0803
39 1 10.1585 -3.1527 -1.1896
40 1 13.5281 -2.9751 -2.6648
41 1 3.9335 0.3074 1.2488
42 1 3.9345 -1.2336 2.1390
43 1 1.6772 -0.2067 2.1391
44 1 1.6776 -1.7487 1.2495
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000768685403.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:37:52
Heat of formation + Delta-G solvation = -154.284550 kcal
Electronic energy + Delta-G solvation = -20602.828058 eV
Core-core repulsion = 17517.548531 eV
Total energy + Delta-G solvation = -3085.279527 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.85811 -40.07514 -37.84356 -35.95599 -34.47855 -33.62461 -31.77206 -29.27066
-28.15726 -27.90180 -25.33247 -23.66800 -23.42073 -22.18898 -21.26624 -19.38656
-18.76112 -18.42011 -17.62966 -17.42698 -16.50224 -16.18878 -15.73024 -15.59069
-14.91169 -14.86118 -14.32761 -14.23600 -14.09997 -13.80264 -13.60031 -13.37643
-13.19039 -12.85575 -12.79036 -12.54500 -12.51410 -12.46133 -12.29894 -12.09922
-11.91937 -11.89813 -11.78604 -11.49432 -11.43559 -11.27131 -11.10408 -10.97308
-10.87648 -10.59522 -8.23200 -6.34953 1.13418 1.40848 1.41208 1.54751
1.66370 2.40571 3.10719 3.47489 3.64500 3.70442 3.96493 4.01993
4.04734 4.06259 4.11515 4.31923 4.38556 4.41319 4.54589 4.56254
4.67724 4.77170 4.83774 4.88551 4.92741 4.96828 5.05454 5.07489
5.10356 5.13309 5.15330 5.23838 5.25560 5.32970 5.42331 5.51809
5.52195 5.53828 5.61383 5.65765 5.78470 6.17463 6.68464 6.81335
7.34790 8.89385
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.044515 B = 0.002855 C = 0.002762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 628.846452 B = 9805.121651 C =10134.939730
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.068 4.068
3 C -0.148 4.148
4 C -0.101 4.101
5 C -0.112 4.112
6 C -0.071 4.071
7 C 0.455 3.545
8 O -0.545 6.545
9 O -0.356 6.356
10 C 0.076 3.924
11 C -0.092 4.092
12 C 0.025 3.975
13 C -0.542 4.542
14 H 0.066 0.934
15 C -0.003 4.003
16 N -0.935 5.935
17 Si 0.970 3.030
18 H -0.259 1.259
19 H -0.278 1.278
20 H -0.278 1.278
21 C -0.104 4.104
22 C -0.101 4.101
23 H 0.057 0.943
24 H 0.058 0.942
25 H 0.061 0.939
26 H 0.046 0.954
27 H 0.058 0.942
28 H 0.057 0.943
29 H 0.078 0.922
30 H 0.076 0.924
31 H 0.062 0.938
32 H 0.075 0.925
33 H 0.127 0.873
34 H 0.059 0.941
35 H 0.060 0.940
36 H 0.067 0.933
37 H 0.067 0.933
38 H -0.004 1.004
39 H -0.004 1.004
40 H 0.265 0.735
41 H 0.061 0.939
42 H 0.061 0.939
43 H 0.074 0.926
44 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.883 4.940 4.654 27.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.068 4.068
3 C -0.205 4.205
4 C -0.138 4.138
5 C -0.150 4.150
6 C -0.090 4.090
7 C 0.300 3.700
8 O -0.435 6.435
9 O -0.272 6.272
10 C 0.003 3.997
11 C -0.130 4.130
12 C -0.012 4.012
13 C -0.580 4.580
14 H 0.084 0.916
15 C -0.200 4.200
16 N -0.575 5.575
17 Si 0.794 3.206
18 H -0.183 1.183
19 H -0.204 1.204
20 H -0.204 1.204
21 C -0.141 4.141
22 C -0.138 4.138
23 H 0.076 0.924
24 H 0.077 0.923
25 H 0.080 0.920
26 H 0.065 0.935
27 H 0.077 0.923
28 H 0.076 0.924
29 H 0.096 0.904
30 H 0.094 0.906
31 H 0.080 0.920
32 H 0.094 0.906
33 H 0.144 0.856
34 H 0.078 0.922
35 H 0.078 0.922
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.014 0.986
39 H 0.014 0.986
40 H 0.073 0.927
41 H 0.080 0.920
42 H 0.080 0.920
43 H 0.093 0.907
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -26.501 5.112 4.944 27.439
hybrid contribution 1.410 -0.146 -0.248 1.439
sum -25.091 4.967 4.696 26.006
Atomic orbital electron populations
1.21819 0.93291 1.02283 1.02071 1.20595 0.96139 0.95169 0.94879
1.21999 1.00728 0.95791 1.01984 1.21591 0.92586 1.01690 0.97971
1.21583 0.97757 1.00283 0.95336 1.21260 0.83607 1.04551 0.99567
1.24729 0.93181 0.73536 0.78525 1.90633 1.71700 1.43747 1.37410
1.86498 1.22381 1.71221 1.47137 1.23111 0.75411 1.01049 1.00146
1.21446 0.95811 1.00217 0.95528 1.18942 0.90387 0.95655 0.96202
1.21648 0.92238 1.36392 1.07696 0.91614 1.26035 0.97774 0.96343
0.99874 1.70110 1.03953 1.46622 1.36804 0.85320 0.78444 0.78090
0.78715 1.18289 1.20356 1.20365 1.21478 0.97093 1.00467 0.95092
1.21593 0.92531 1.01621 0.98066 0.92386 0.92322 0.91983 0.93460
0.92285 0.92425 0.90378 0.90553 0.91969 0.90648 0.85552 0.92243
0.92171 0.91423 0.91444 0.98590 0.98579 0.92658 0.92027 0.91987
0.90701 0.90464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.27 8.48 71.98 0.61 -0.66 16
2 C -0.07 -0.81 0.77 -52.18 -0.04 -0.85 16
3 C -0.15 -2.02 7.78 71.98 0.56 -1.46 16
4 C -0.10 -1.27 4.73 30.59 0.14 -1.12 16
5 C -0.11 -1.99 4.86 30.59 0.15 -1.84 16
6 C -0.07 -1.46 2.63 -11.54 -0.03 -1.49 16
7 C 0.46 13.97 7.25 71.23 0.52 14.49 16
8 O -0.54 -20.20 15.73 21.96 0.35 -19.85 16
9 O -0.36 -11.98 10.12 -51.45 -0.52 -12.50 16
10 C 0.08 2.94 5.47 71.98 0.39 3.34 16
11 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16
12 C 0.03 1.35 4.97 29.85 0.15 1.50 16
13 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16
14 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16
15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16
16 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16
17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16
18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16
19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
21 C -0.10 -1.95 4.22 30.59 0.13 -1.82 16
22 C -0.10 -1.29 4.73 30.60 0.14 -1.15 16
23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
26 H 0.05 0.79 4.81 -2.38 -0.01 0.78 16
27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
31 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16
32 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16
33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16
34 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16
35 H 0.06 2.36 8.13 -2.39 -0.02 2.35 16
36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16
37 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16
38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16
39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16
40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16
41 H 0.06 1.33 6.38 -2.39 -0.02 1.31 16
42 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16
43 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16
44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
Total: -1.00 -66.96 346.12 6.66 -60.30
By element:
Atomic # 1 Polarization: 7.13 SS G_CDS: 0.94 Total: 8.07 kcal
Atomic # 6 Polarization: -28.77 SS G_CDS: 3.59 Total: -25.18 kcal
Atomic # 7 Polarization: -57.36 SS G_CDS: 0.28 Total: -57.08 kcal
Atomic # 8 Polarization: -32.18 SS G_CDS: -0.18 Total: -32.35 kcal
Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal
Total: -66.96 6.66 -60.30 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000768685403.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.983 kcal
(2) G-P(sol) polarization free energy of solvation -66.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds