Wall clock time and date at job start Mon Mar 30 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.20828 * 120.00136 * 120.00215 * 7 6 5 9 9 O 1.34234 * 119.99749 * 299.99620 * 7 6 5 10 10 C 1.45206 * 116.99844 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47044 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99940 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00144 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00236 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46873 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47386 * 119.99082 * 17 15 13 20 20 H 1.48504 * 109.47251 * 239.99742 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08996 * 109.46598 * 300.00309 * 10 9 7 35 35 H 1.09003 * 109.46732 * 60.00033 * 10 9 7 36 36 H 1.08999 * 109.47259 * 300.00068 * 11 10 9 37 37 H 1.09002 * 109.46790 * 59.99977 * 11 10 9 38 38 H 1.08999 * 109.47403 * 300.00246 * 12 11 10 39 39 H 1.09002 * 109.46918 * 59.99981 * 12 11 10 40 40 H 0.96997 * 120.00283 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 8 6.1913 -0.9169 0.9060 9 8 6.2591 -2.0213 -1.0070 10 6 7.7091 -1.9828 -0.9409 11 6 8.2944 -2.6898 -2.1650 12 6 9.8223 -2.6487 -2.0957 13 6 10.3987 -3.3445 -3.3017 14 1 9.7411 -3.7736 -4.0433 15 6 11.7656 -3.4343 -3.4580 16 7 12.5664 -2.9122 -2.5547 17 14 12.4802 -4.2975 -4.9525 18 1 11.3759 -4.7950 -5.8118 19 1 13.3159 -3.3422 -5.7235 20 1 13.3168 -5.4420 -4.5102 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 8.0446 -0.9459 -0.9248 35 1 8.0450 -2.4875 -0.0351 36 1 7.9588 -3.7267 -2.1807 37 1 7.9583 -2.1855 -3.0710 38 1 10.1575 -1.6116 -2.0803 39 1 10.1585 -3.1527 -1.1896 40 1 13.5281 -2.9751 -2.6648 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768685403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:52 Heat of formation + Delta-G solvation = -154.284550 kcal Electronic energy + Delta-G solvation = -20602.828058 eV Core-core repulsion = 17517.548531 eV Total energy + Delta-G solvation = -3085.279527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85811 -40.07514 -37.84356 -35.95599 -34.47855 -33.62461 -31.77206 -29.27066 -28.15726 -27.90180 -25.33247 -23.66800 -23.42073 -22.18898 -21.26624 -19.38656 -18.76112 -18.42011 -17.62966 -17.42698 -16.50224 -16.18878 -15.73024 -15.59069 -14.91169 -14.86118 -14.32761 -14.23600 -14.09997 -13.80264 -13.60031 -13.37643 -13.19039 -12.85575 -12.79036 -12.54500 -12.51410 -12.46133 -12.29894 -12.09922 -11.91937 -11.89813 -11.78604 -11.49432 -11.43559 -11.27131 -11.10408 -10.97308 -10.87648 -10.59522 -8.23200 -6.34953 1.13418 1.40848 1.41208 1.54751 1.66370 2.40571 3.10719 3.47489 3.64500 3.70442 3.96493 4.01993 4.04734 4.06259 4.11515 4.31923 4.38556 4.41319 4.54589 4.56254 4.67724 4.77170 4.83774 4.88551 4.92741 4.96828 5.05454 5.07489 5.10356 5.13309 5.15330 5.23838 5.25560 5.32970 5.42331 5.51809 5.52195 5.53828 5.61383 5.65765 5.78470 6.17463 6.68464 6.81335 7.34790 8.89385 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044515 B = 0.002855 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.846452 B = 9805.121651 C =10134.939730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.112 4.112 6 C -0.071 4.071 7 C 0.455 3.545 8 O -0.545 6.545 9 O -0.356 6.356 10 C 0.076 3.924 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.066 0.934 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.104 4.104 22 C -0.101 4.101 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.265 0.735 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.883 4.940 4.654 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.090 4.090 7 C 0.300 3.700 8 O -0.435 6.435 9 O -0.272 6.272 10 C 0.003 3.997 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.141 4.141 22 C -0.138 4.138 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.501 5.112 4.944 27.439 hybrid contribution 1.410 -0.146 -0.248 1.439 sum -25.091 4.967 4.696 26.006 Atomic orbital electron populations 1.21819 0.93291 1.02283 1.02071 1.20595 0.96139 0.95169 0.94879 1.21999 1.00728 0.95791 1.01984 1.21591 0.92586 1.01690 0.97971 1.21583 0.97757 1.00283 0.95336 1.21260 0.83607 1.04551 0.99567 1.24729 0.93181 0.73536 0.78525 1.90633 1.71700 1.43747 1.37410 1.86498 1.22381 1.71221 1.47137 1.23111 0.75411 1.01049 1.00146 1.21446 0.95811 1.00217 0.95528 1.18942 0.90387 0.95655 0.96202 1.21648 0.92238 1.36392 1.07696 0.91614 1.26035 0.97774 0.96343 0.99874 1.70110 1.03953 1.46622 1.36804 0.85320 0.78444 0.78090 0.78715 1.18289 1.20356 1.20365 1.21478 0.97093 1.00467 0.95092 1.21593 0.92531 1.01621 0.98066 0.92386 0.92322 0.91983 0.93460 0.92285 0.92425 0.90378 0.90553 0.91969 0.90648 0.85552 0.92243 0.92171 0.91423 0.91444 0.98590 0.98579 0.92658 0.92027 0.91987 0.90701 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.48 71.98 0.61 -0.66 16 2 C -0.07 -0.81 0.77 -52.18 -0.04 -0.85 16 3 C -0.15 -2.02 7.78 71.98 0.56 -1.46 16 4 C -0.10 -1.27 4.73 30.59 0.14 -1.12 16 5 C -0.11 -1.99 4.86 30.59 0.15 -1.84 16 6 C -0.07 -1.46 2.63 -11.54 -0.03 -1.49 16 7 C 0.46 13.97 7.25 71.23 0.52 14.49 16 8 O -0.54 -20.20 15.73 21.96 0.35 -19.85 16 9 O -0.36 -11.98 10.12 -51.45 -0.52 -12.50 16 10 C 0.08 2.94 5.47 71.98 0.39 3.34 16 11 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 12 C 0.03 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 14 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.10 -1.95 4.22 30.59 0.13 -1.82 16 22 C -0.10 -1.29 4.73 30.60 0.14 -1.15 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.79 4.81 -2.38 -0.01 0.78 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.22 6.43 -2.39 -0.02 1.20 16 32 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 35 H 0.06 2.36 8.13 -2.39 -0.02 2.35 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.06 1.33 6.38 -2.39 -0.02 1.31 16 42 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -66.96 346.12 6.66 -60.30 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.94 Total: 8.07 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 3.59 Total: -25.18 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.18 Total: -32.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.96 6.66 -60.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768685403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.983 kcal (2) G-P(sol) polarization free energy of solvation -66.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds