Wall clock time and date at job start Mon Mar 30 2020 01:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52678 * 1 3 3 H 1.11147 * 106.67282 * 2 1 4 4 C 1.52226 * 110.83380 * 116.08738 * 2 1 3 5 5 C 1.52731 * 111.09712 * 74.80951 * 4 2 1 6 6 H 1.08670 * 110.34283 * 298.58533 * 5 4 2 7 7 C 1.51051 * 109.13380 * 179.01211 * 5 4 2 8 8 O 1.20830 * 120.00324 * 241.03209 * 7 5 4 9 9 O 1.34231 * 120.00018 * 61.03744 * 7 5 4 10 10 C 1.45206 * 117.00207 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47531 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.52885 * 108.99102 * 60.00810 * 5 4 2 22 22 C 1.52571 * 110.14058 * 298.05472 * 21 5 4 23 23 H 1.10975 * 106.99564 * 172.69934 * 22 21 5 24 24 C 1.52461 * 111.05642 * 289.21051 * 22 21 5 25 25 C 1.51817 * 111.94394 * 243.03991 * 2 1 3 26 26 H 1.08994 * 109.46944 * 176.95836 * 1 2 3 27 27 H 1.09003 * 109.46978 * 296.95763 * 1 2 3 28 28 H 1.09003 * 109.46887 * 56.95778 * 1 2 3 29 29 H 1.09370 * 109.50189 * 314.15587 * 4 2 1 30 30 H 1.09373 * 109.49312 * 195.45548 * 4 2 1 31 31 H 1.09002 * 109.47266 * 59.99544 * 10 9 7 32 32 H 1.09001 * 109.46670 * 299.99765 * 10 9 7 33 33 H 1.09002 * 109.47103 * 59.99585 * 11 10 9 34 34 H 1.08998 * 109.46862 * 300.00397 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 37 37 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 38 38 H 1.09164 * 109.34011 * 58.48499 * 21 5 4 39 39 H 1.09186 * 109.30309 * 177.69097 * 21 5 4 40 40 H 1.09001 * 109.47249 * 59.99775 * 24 22 21 41 41 H 1.09001 * 109.47314 * 180.02562 * 24 22 21 42 42 H 1.09008 * 109.46974 * 300.00097 * 24 22 21 43 43 H 1.10042 * 108.82798 * 157.59535 * 25 2 1 44 44 H 1.10031 * 108.85948 * 41.85118 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5268 0.0000 0.0000 3 1 1.8457 1.0647 0.0000 4 6 2.0682 -0.6256 1.2778 5 6 1.9147 -2.1450 1.2538 6 1 0.8650 -2.4177 1.1852 7 6 2.4864 -2.7206 2.5280 8 8 3.4136 -3.4938 2.4790 9 8 1.9644 -2.3731 3.7148 10 6 2.5642 -2.9646 4.8975 11 6 1.8421 -2.4534 6.1457 12 6 2.4738 -3.0771 7.3918 13 6 1.7628 -2.5731 8.6212 14 1 0.9422 -1.8779 8.5236 15 6 2.1593 -3.0005 9.8707 16 7 1.5385 -2.5610 10.9436 17 14 3.5782 -4.2036 10.0396 18 1 4.8525 -3.4516 10.1655 19 1 3.3760 -5.0408 11.2493 20 1 3.6342 -5.0748 8.8383 21 6 2.6906 -2.7047 0.0612 22 6 2.1167 -2.1576 -1.2423 23 1 2.7940 -2.4858 -2.0579 24 6 0.7452 -2.7576 -1.5313 25 6 2.0941 -0.6384 -1.2551 26 1 -0.3633 -1.0262 -0.0545 27 1 -0.3633 0.4659 0.9160 28 1 -0.3633 0.5604 -0.8615 29 1 1.5268 -0.2237 2.1389 30 1 3.1268 -0.3734 1.3875 31 1 3.6172 -2.6873 4.9482 32 1 2.4764 -4.0498 4.8453 33 1 0.7890 -2.7304 6.0952 34 1 1.9302 -1.3683 6.1975 35 1 3.5269 -2.8006 7.4425 36 1 2.3852 -4.1623 7.3396 37 1 1.8177 -2.8614 11.8227 38 1 3.7406 -2.4185 0.1466 39 1 2.6183 -3.7941 0.0628 40 1 0.0620 -2.5109 -0.7186 41 1 0.3602 -2.3504 -2.4663 42 1 0.8329 -3.8408 -1.6160 43 1 3.1200 -0.2708 -1.4080 44 1 1.5076 -0.3002 -2.1225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780233030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:53 Heat of formation + Delta-G solvation = -136.465607 kcal Electronic energy + Delta-G solvation = -20769.839685 eV Core-core repulsion = 17685.332845 eV Total energy + Delta-G solvation = -3084.506840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71893 -38.97258 -36.47724 -34.08434 -33.30701 -32.39471 -31.72881 -27.80100 -27.58408 -26.45299 -24.57928 -22.77041 -21.45888 -20.67096 -20.15470 -18.34358 -17.51079 -17.00507 -16.46415 -16.30208 -15.18617 -14.65507 -14.52030 -14.35048 -14.17686 -14.01005 -13.70823 -13.08263 -13.03488 -12.74921 -12.68422 -12.30923 -12.03464 -11.95602 -11.77077 -11.39906 -11.30478 -11.12803 -11.04457 -10.95167 -10.86611 -10.47103 -10.38803 -10.33784 -10.08562 -9.93520 -9.77543 -9.69560 -9.24856 -8.56942 -6.07250 -4.06191 2.32812 2.85345 3.29747 3.37340 3.41022 4.27305 4.33190 4.40236 4.42895 4.78548 4.82435 4.88199 4.91850 4.96113 5.03498 5.16229 5.26154 5.32781 5.42839 5.47087 5.48346 5.51426 5.60052 5.63282 5.69640 5.74483 5.75925 5.80697 5.87833 5.92927 6.04117 6.07293 6.13631 6.22566 6.39137 6.39863 6.69727 6.82828 7.21537 7.32762 7.72640 7.92903 8.49738 8.97109 9.54384 11.05974 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.003205 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.172537 B = 8734.814417 C = 9162.106512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.066 0.934 4 C -0.106 4.106 5 C -0.074 4.074 6 H 0.108 0.892 7 C 0.457 3.543 8 O -0.514 6.514 9 O -0.355 6.355 10 C 0.065 3.935 11 C -0.101 4.101 12 C -0.011 4.011 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.098 4.098 22 C -0.086 4.086 23 H 0.065 0.935 24 C -0.152 4.152 25 C -0.106 4.106 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.014 0.986 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 3.247 -26.928 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.144 4.144 5 C -0.093 4.093 6 H 0.126 0.874 7 C 0.300 3.700 8 O -0.403 6.403 9 O -0.271 6.271 10 C -0.008 4.008 11 C -0.139 4.139 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.135 4.135 22 C -0.104 4.104 23 H 0.084 0.916 24 C -0.209 4.209 25 C -0.143 4.143 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.143 3.011 -26.702 26.872 hybrid contribution 0.903 -0.748 0.399 1.239 sum 0.759 2.262 -26.303 26.411 Atomic orbital electron populations 1.21958 0.94900 1.02318 1.01834 1.20787 0.95961 0.99626 0.93844 0.91592 1.21427 1.02271 0.92065 0.98587 1.20982 1.01957 0.97202 0.89205 0.87445 1.23899 0.81068 0.78932 0.86071 1.90640 1.27952 1.33703 1.87992 1.86506 1.59068 1.66236 1.15318 1.23475 0.97705 0.97802 0.81838 1.21547 1.00030 1.01287 0.90994 1.19522 0.96182 0.96255 0.92861 1.21061 1.17961 1.27852 0.89069 0.90794 1.25016 0.96528 0.96061 0.95811 1.69910 1.41443 1.44613 0.98086 0.86783 0.82959 0.81771 0.77828 1.20201 1.21272 1.18980 1.21390 0.99509 1.00790 0.91836 1.20861 0.97447 0.94979 0.97123 0.91629 1.21893 0.96779 1.00573 1.01618 1.21294 1.01211 0.94490 0.97347 0.92067 0.92288 0.92752 0.90154 0.91526 0.91662 0.91646 0.91552 0.91572 0.96746 0.96306 0.92645 0.91005 0.91003 0.92003 0.92609 0.92626 0.92286 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.93 36.99 0.33 -0.74 16 2 C -0.08 -0.62 2.58 -91.78 -0.24 -0.86 16 3 H 0.07 0.46 8.29 -50.69 -0.42 0.04 16 4 C -0.11 -1.00 4.51 -27.26 -0.12 -1.12 16 5 C -0.07 -0.79 2.45 -91.80 -0.22 -1.01 16 6 H 0.11 1.03 6.39 -52.11 -0.33 0.69 16 7 C 0.46 6.78 7.24 36.18 0.26 7.05 16 8 O -0.51 -8.98 15.68 -18.75 -0.29 -9.28 16 9 O -0.35 -5.79 10.13 -39.26 -0.40 -6.18 16 10 C 0.06 1.16 5.47 37.15 0.20 1.36 16 11 C -0.10 -2.03 5.53 -26.74 -0.15 -2.18 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 17 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.10 -0.94 3.93 -27.01 -0.11 -1.04 16 22 C -0.09 -0.63 2.60 -91.65 -0.24 -0.87 16 23 H 0.07 0.45 8.28 -50.79 -0.42 0.03 16 24 C -0.15 -1.01 8.83 36.88 0.33 -0.69 16 25 C -0.11 -0.72 4.81 -27.87 -0.13 -0.86 16 26 H 0.06 0.42 4.82 -51.93 -0.25 0.17 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.80 8.04 -51.72 -0.42 0.39 16 30 H 0.07 0.65 8.17 -51.72 -0.42 0.23 16 31 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.07 0.75 8.11 -51.84 -0.42 0.33 16 39 H 0.07 0.74 8.05 -51.82 -0.42 0.32 16 40 H 0.06 0.42 4.51 -51.93 -0.23 0.19 16 41 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 42 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 43 H 0.06 0.40 8.23 -51.34 -0.42 -0.03 16 44 H 0.06 0.38 8.04 -51.34 -0.41 -0.04 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -31.42 341.09 -7.98 -39.40 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.90 Total: -4.43 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.63 Total: -14.71 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.69 Total: -15.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.42 -7.98 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.061 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds