Wall clock time and date at job start Mon Mar 30 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52678 * 1 3 3 H 1.11147 * 106.67282 * 2 1 4 4 C 1.52226 * 110.83380 * 116.08738 * 2 1 3 5 5 C 1.52731 * 111.09712 * 74.80951 * 4 2 1 6 6 H 1.08670 * 110.34283 * 298.58533 * 5 4 2 7 7 C 1.51051 * 109.13380 * 179.01211 * 5 4 2 8 8 O 1.20830 * 120.00324 * 241.03209 * 7 5 4 9 9 O 1.34231 * 120.00018 * 61.03744 * 7 5 4 10 10 C 1.45206 * 117.00207 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47531 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.52885 * 108.99102 * 60.00810 * 5 4 2 22 22 C 1.52571 * 110.14058 * 298.05472 * 21 5 4 23 23 H 1.10975 * 106.99564 * 172.69934 * 22 21 5 24 24 C 1.52461 * 111.05642 * 289.21051 * 22 21 5 25 25 C 1.51817 * 111.94394 * 243.03991 * 2 1 3 26 26 H 1.08994 * 109.46944 * 176.95836 * 1 2 3 27 27 H 1.09003 * 109.46978 * 296.95763 * 1 2 3 28 28 H 1.09003 * 109.46887 * 56.95778 * 1 2 3 29 29 H 1.09370 * 109.50189 * 314.15587 * 4 2 1 30 30 H 1.09373 * 109.49312 * 195.45548 * 4 2 1 31 31 H 1.09002 * 109.47266 * 59.99544 * 10 9 7 32 32 H 1.09001 * 109.46670 * 299.99765 * 10 9 7 33 33 H 1.09002 * 109.47103 * 59.99585 * 11 10 9 34 34 H 1.08998 * 109.46862 * 300.00397 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 37 37 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 38 38 H 1.09164 * 109.34011 * 58.48499 * 21 5 4 39 39 H 1.09186 * 109.30309 * 177.69097 * 21 5 4 40 40 H 1.09001 * 109.47249 * 59.99775 * 24 22 21 41 41 H 1.09001 * 109.47314 * 180.02562 * 24 22 21 42 42 H 1.09008 * 109.46974 * 300.00097 * 24 22 21 43 43 H 1.10042 * 108.82798 * 157.59535 * 25 2 1 44 44 H 1.10031 * 108.85948 * 41.85118 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5268 0.0000 0.0000 3 1 1.8457 1.0647 0.0000 4 6 2.0682 -0.6256 1.2778 5 6 1.9147 -2.1450 1.2538 6 1 0.8650 -2.4177 1.1852 7 6 2.4864 -2.7206 2.5280 8 8 3.4136 -3.4938 2.4790 9 8 1.9644 -2.3731 3.7148 10 6 2.5642 -2.9646 4.8975 11 6 1.8421 -2.4534 6.1457 12 6 2.4738 -3.0771 7.3918 13 6 1.7628 -2.5731 8.6212 14 1 0.9422 -1.8779 8.5236 15 6 2.1593 -3.0005 9.8707 16 7 1.5385 -2.5610 10.9436 17 14 3.5782 -4.2036 10.0396 18 1 4.8525 -3.4516 10.1655 19 1 3.3760 -5.0408 11.2493 20 1 3.6342 -5.0748 8.8383 21 6 2.6906 -2.7047 0.0612 22 6 2.1167 -2.1576 -1.2423 23 1 2.7940 -2.4858 -2.0579 24 6 0.7452 -2.7576 -1.5313 25 6 2.0941 -0.6384 -1.2551 26 1 -0.3633 -1.0262 -0.0545 27 1 -0.3633 0.4659 0.9160 28 1 -0.3633 0.5604 -0.8615 29 1 1.5268 -0.2237 2.1389 30 1 3.1268 -0.3734 1.3875 31 1 3.6172 -2.6873 4.9482 32 1 2.4764 -4.0498 4.8453 33 1 0.7890 -2.7304 6.0952 34 1 1.9302 -1.3683 6.1975 35 1 3.5269 -2.8006 7.4425 36 1 2.3852 -4.1623 7.3396 37 1 1.8177 -2.8614 11.8227 38 1 3.7406 -2.4185 0.1466 39 1 2.6183 -3.7941 0.0628 40 1 0.0620 -2.5109 -0.7186 41 1 0.3602 -2.3504 -2.4663 42 1 0.8329 -3.8408 -1.6160 43 1 3.1200 -0.2708 -1.4080 44 1 1.5076 -0.3002 -2.1225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780233030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:52 Heat of formation + Delta-G solvation = -152.489403 kcal Electronic energy + Delta-G solvation = -20770.534529 eV Core-core repulsion = 17685.332845 eV Total energy + Delta-G solvation = -3085.201684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83855 -39.81913 -37.80741 -35.95461 -34.01144 -33.84992 -33.04985 -29.49080 -28.23646 -27.12179 -25.80741 -24.31028 -22.14635 -22.08004 -21.59734 -19.12894 -18.99368 -18.58116 -17.72512 -17.58355 -16.35287 -16.14152 -15.65965 -15.22763 -15.04624 -14.97447 -14.82753 -14.44781 -14.23584 -13.92749 -13.78971 -13.64318 -13.31979 -12.87413 -12.63496 -12.61909 -12.43867 -12.19786 -12.05048 -11.98038 -11.93141 -11.80605 -11.76293 -11.64949 -11.42063 -11.38228 -11.11362 -10.96070 -10.79157 -10.68969 -8.31821 -6.36888 1.13355 1.35502 1.37034 1.48859 1.65319 2.34271 3.03264 3.44180 3.64394 3.65708 3.96944 4.00933 4.04136 4.14798 4.18120 4.25369 4.27661 4.35508 4.39581 4.41285 4.69968 4.71179 4.76299 4.87059 4.90671 4.93821 4.95739 5.02074 5.09661 5.10787 5.17087 5.21532 5.30812 5.33887 5.39904 5.45890 5.46427 5.52372 5.55836 5.61387 5.68403 6.24146 6.67464 6.71959 7.27673 8.84805 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.003205 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.172537 B = 8734.814417 C = 9162.106512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.073 0.927 4 C -0.104 4.104 5 C -0.067 4.067 6 H 0.122 0.878 7 C 0.455 3.545 8 O -0.542 6.542 9 O -0.358 6.358 10 C 0.073 3.927 11 C -0.091 4.091 12 C -0.009 4.009 13 C -0.535 4.535 14 H 0.036 0.964 15 C 0.006 3.994 16 N -0.949 5.949 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.095 4.095 22 C -0.081 4.081 23 H 0.074 0.926 24 C -0.152 4.152 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.268 0.732 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 2.828 -29.141 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.142 4.142 5 C -0.086 4.086 6 H 0.139 0.861 7 C 0.300 3.700 8 O -0.432 6.432 9 O -0.275 6.275 10 C 0.000 4.000 11 C -0.129 4.129 12 C -0.047 4.047 13 C -0.573 4.573 14 H 0.054 0.946 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.773 3.227 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.132 4.132 22 C -0.100 4.100 23 H 0.092 0.908 24 C -0.209 4.209 25 C -0.143 4.143 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.560 2.603 -28.943 29.066 hybrid contribution 0.612 -0.553 1.072 1.353 sum 1.172 2.049 -27.871 27.971 Atomic orbital electron populations 1.21964 0.94400 1.02540 1.02110 1.20770 0.96305 0.99827 0.92954 0.90867 1.21446 1.01981 0.91077 0.99679 1.21129 1.02474 0.97860 0.87090 0.86071 1.24798 0.80538 0.78264 0.86403 1.90626 1.29283 1.35050 1.88196 1.86507 1.59155 1.66267 1.15537 1.23165 0.97381 0.97794 0.81707 1.21309 0.99814 1.00883 0.90895 1.19447 0.96253 0.96557 0.92398 1.21399 1.17339 1.27182 0.91336 0.94582 1.25999 0.99642 0.98182 0.95313 1.70057 1.43573 1.46469 0.98855 0.85666 0.79173 0.79374 0.78514 1.19042 1.20788 1.17061 1.21391 0.98936 1.00276 0.92623 1.20841 0.97961 0.95390 0.95761 0.90787 1.21899 0.96218 1.00528 1.02211 1.21295 1.01651 0.93892 0.97448 0.91991 0.92913 0.91525 0.90908 0.92133 0.91359 0.91379 0.91855 0.91832 0.95819 0.95701 0.92349 0.92102 0.91932 0.92177 0.91319 0.92812 0.92082 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.93 71.88 0.64 -1.15 16 2 C -0.08 -1.02 2.58 -11.55 -0.03 -1.05 16 3 H 0.07 0.86 8.29 -1.22 -0.01 0.85 16 4 C -0.10 -1.83 4.51 30.25 0.14 -1.70 16 5 C -0.07 -1.33 2.45 -11.56 -0.03 -1.36 16 6 H 0.12 2.12 6.39 -2.56 -0.02 2.10 16 7 C 0.46 13.16 7.24 71.35 0.52 13.68 16 8 O -0.54 -18.61 15.68 21.95 0.34 -18.27 16 9 O -0.36 -11.39 10.13 -51.42 -0.52 -11.91 16 10 C 0.07 2.53 5.47 71.98 0.39 2.92 16 11 C -0.09 -3.64 5.53 30.59 0.17 -3.47 16 12 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 13 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 14 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 15 C 0.01 0.34 5.47 84.66 0.46 0.80 16 16 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 17 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 21 C -0.09 -1.70 3.93 30.41 0.12 -1.59 16 22 C -0.08 -1.01 2.60 -11.46 -0.03 -1.04 16 23 H 0.07 0.84 8.28 -1.32 -0.01 0.83 16 24 C -0.15 -1.66 8.83 71.80 0.63 -1.03 16 25 C -0.11 -1.16 4.81 29.86 0.14 -1.02 16 26 H 0.06 0.72 4.82 -2.39 -0.01 0.70 16 27 H 0.05 0.68 8.09 -2.39 -0.02 0.67 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.39 8.04 -2.19 -0.02 1.37 16 30 H 0.06 1.13 8.17 -2.19 -0.02 1.11 16 31 H 0.07 2.32 8.13 -2.39 -0.02 2.31 16 32 H 0.07 2.32 8.13 -2.39 -0.02 2.31 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 36 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.06 1.22 8.11 -2.30 -0.02 1.21 16 39 H 0.06 1.24 8.05 -2.29 -0.02 1.22 16 40 H 0.06 0.68 4.51 -2.39 -0.01 0.67 16 41 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 42 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.06 0.67 8.23 -1.83 -0.02 0.65 16 44 H 0.08 0.67 8.04 -1.84 -0.01 0.65 16 Total: -1.00 -67.67 341.09 6.42 -61.25 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.92 Total: 9.27 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.50 Total: -27.13 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.52 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.18 Total: -30.18 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -67.67 6.42 -61.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.239 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds