Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46845 * 2 1 4 4 C 1.53004 * 109.47472 * 240.00499 * 2 1 3 5 5 C 1.52995 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46972 * 179.97438 * 5 4 2 7 7 O 1.20825 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.34233 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.45194 * 116.99930 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46879 * 60.00177 * 16 14 12 18 18 H 1.48494 * 109.47196 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47151 * 300.00589 * 16 14 12 20 20 C 1.52997 * 109.47567 * 59.99514 * 5 4 2 21 21 C 1.52992 * 109.47234 * 300.00095 * 20 5 4 22 22 H 1.09003 * 109.47381 * 179.97438 * 21 20 5 23 23 C 1.53005 * 109.47301 * 299.99969 * 21 20 5 24 24 C 1.52997 * 109.47244 * 120.00011 * 2 1 3 25 25 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47657 * 299.99458 * 1 2 3 27 27 H 1.09003 * 109.47104 * 60.00082 * 1 2 3 28 28 H 1.08995 * 109.47135 * 59.99640 * 4 2 1 29 29 H 1.09003 * 109.46678 * 299.99603 * 4 2 1 30 30 H 1.09003 * 109.46849 * 299.99303 * 5 4 2 31 31 H 1.09001 * 109.47510 * 60.00620 * 9 8 6 32 32 H 1.09001 * 109.47429 * 300.00326 * 9 8 6 33 33 H 1.09001 * 109.47002 * 299.99655 * 10 9 8 34 34 H 1.08993 * 109.46955 * 60.00092 * 10 9 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 37 37 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46745 * 60.00271 * 20 5 4 39 39 H 1.08996 * 109.47244 * 180.02562 * 20 5 4 40 40 H 1.08995 * 109.47147 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47013 * 299.99879 * 23 21 20 42 42 H 1.09003 * 109.46945 * 59.99681 * 23 21 20 43 43 H 1.09000 * 109.47116 * 300.00016 * 24 2 1 44 44 H 1.09003 * 109.47209 * 60.00211 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0724 -1.4325 -2.4791 7 8 3.2872 -1.8920 -3.2743 8 8 5.3921 -1.5552 -2.6915 9 6 5.8038 -2.2513 -3.8973 10 6 7.3317 -2.2920 -3.9663 11 6 7.7656 -3.0250 -5.2373 12 6 9.2705 -3.0645 -5.3055 13 1 9.8587 -2.6124 -4.5206 14 6 9.8965 -3.6787 -6.3694 15 7 9.1802 -4.2297 -7.3250 16 14 11.7619 -3.7283 -6.4536 17 1 12.2922 -4.4424 -5.2645 18 1 12.1830 -4.4396 -7.6873 19 1 12.2935 -2.3419 -6.4762 20 6 4.0795 -1.4432 0.0003 21 6 3.5695 -0.7221 1.2495 22 1 3.9321 -1.2364 2.1395 23 6 4.0799 0.7203 1.2499 24 6 2.0400 -0.7212 1.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2073 -2.1392 29 1 1.6767 -1.7488 -1.2493 30 1 3.9336 0.3059 -1.2487 31 1 5.4142 -1.7275 -4.7703 32 1 5.4139 -3.2691 -3.8804 33 1 7.7219 -1.2744 -3.9831 34 1 7.7209 -2.8160 -3.0934 35 1 7.3754 -4.0426 -5.2210 36 1 7.3763 -2.5006 -6.1100 37 1 9.6206 -4.6614 -8.0737 38 1 3.7159 -2.4708 0.0000 39 1 5.1695 -1.4432 0.0008 40 1 3.7169 1.2339 2.1401 41 1 5.1699 0.7200 1.2501 42 1 3.7169 1.2344 0.3599 43 1 1.6766 -0.2074 2.1392 44 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780233035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -140.624218 kcal Electronic energy + Delta-G solvation = -20632.113607 eV Core-core repulsion = 17547.426436 eV Total energy + Delta-G solvation = -3084.687171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70285 -39.02378 -36.38659 -34.00039 -33.45653 -32.23828 -31.54771 -27.21368 -27.08598 -26.64665 -24.42890 -22.84112 -21.59058 -20.48192 -20.14476 -18.97302 -17.30997 -16.61710 -16.27336 -16.02456 -15.23896 -15.05961 -14.47771 -14.28277 -14.18545 -13.90894 -13.65508 -13.03803 -12.87618 -12.42420 -12.17440 -12.11330 -12.03525 -11.87224 -11.82449 -11.49969 -11.31009 -11.18320 -10.94444 -10.78057 -10.65426 -10.62243 -10.49534 -10.34012 -10.20694 -10.08514 -9.70253 -9.46732 -9.16768 -8.38097 -6.03012 -4.06137 2.39525 2.93639 3.32618 3.36891 3.39520 4.33767 4.36809 4.42426 4.48734 4.75791 4.81839 4.93181 5.01091 5.08949 5.11846 5.27558 5.32763 5.39330 5.42529 5.45708 5.56023 5.60082 5.63404 5.66574 5.67914 5.76807 5.83181 5.90030 5.96189 6.00686 6.04208 6.08536 6.11088 6.25142 6.55380 6.55520 6.88332 7.00390 7.60704 7.72117 7.95099 8.00086 8.36611 8.99959 9.57995 11.08452 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039539 B = 0.002984 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.990493 B = 9381.985236 C = 9894.000215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.098 4.098 5 C -0.080 4.080 6 C 0.459 3.541 7 O -0.513 6.513 8 O -0.357 6.357 9 C 0.067 3.933 10 C -0.108 4.108 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.107 4.107 21 C -0.090 4.090 22 H 0.075 0.925 23 C -0.154 4.154 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 9.418 18.315 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.099 4.099 6 C 0.301 3.699 7 O -0.402 6.402 8 O -0.274 6.274 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.145 4.145 21 C -0.108 4.108 22 H 0.093 0.907 23 C -0.211 4.211 24 C -0.149 4.149 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.537 9.158 17.870 25.389 hybrid contribution 0.993 -0.199 -0.400 1.089 sum -14.543 8.959 17.470 24.433 Atomic orbital electron populations 1.21812 0.95004 1.01961 1.01632 1.21181 0.95585 0.99891 0.94485 0.90686 1.21499 0.91911 1.02139 0.98055 1.21111 0.97099 1.00826 0.90907 1.23687 0.81296 0.77537 0.87334 1.90644 1.57033 1.45802 1.46708 1.86497 1.24794 1.70543 1.45517 1.23483 0.98051 0.95783 0.83258 1.21753 0.89084 1.01890 1.01865 1.19045 0.96396 0.95291 0.90565 1.21141 0.91462 1.36434 1.07002 0.92483 1.25035 0.98461 0.95335 0.95636 1.69958 1.35443 1.37257 1.10737 0.86602 0.85478 0.78237 0.77367 1.20170 1.21255 1.20175 1.21573 1.01751 0.99079 0.92097 1.21089 0.95425 0.96596 0.97698 0.90665 1.21973 1.01313 0.95940 1.01872 1.21663 0.94936 1.00817 0.97491 0.92616 0.92682 0.92595 0.91064 0.90971 0.87413 0.91633 0.91639 0.92193 0.92185 0.96268 0.96267 0.92830 0.91349 0.90181 0.92729 0.92345 0.92107 0.91842 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.15 0.34 -0.67 16 2 C -0.09 -0.70 2.45 -90.62 -0.22 -0.93 16 3 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 4 C -0.10 -0.98 3.77 -26.73 -0.10 -1.08 16 5 C -0.08 -0.88 2.35 -91.78 -0.22 -1.10 16 6 C 0.46 7.11 7.25 36.01 0.26 7.37 16 7 O -0.51 -9.40 15.73 -18.75 -0.29 -9.69 16 8 O -0.36 -6.09 10.12 -39.27 -0.40 -6.49 16 9 C 0.07 1.28 5.47 37.16 0.20 1.48 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.43 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 16 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.11 -1.04 4.66 -26.74 -0.12 -1.16 16 21 C -0.09 -0.68 3.19 -90.64 -0.29 -0.97 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 C -0.15 -1.08 8.50 37.16 0.32 -0.77 16 24 C -0.11 -0.79 4.73 -26.76 -0.13 -0.92 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16 31 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -31.06 346.79 -8.47 -39.53 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -8.06 Total: -4.63 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.66 Total: -14.30 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.69 Total: -16.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.06 -8.47 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.094 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds