Wall clock time and date at job start Mon Mar 30 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46845 * 2 1 4 4 C 1.53004 * 109.47472 * 240.00499 * 2 1 3 5 5 C 1.52995 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46972 * 179.97438 * 5 4 2 7 7 O 1.20825 * 120.00071 * 359.97438 * 6 5 4 8 8 O 1.34233 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.45194 * 116.99930 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46879 * 60.00177 * 16 14 12 18 18 H 1.48494 * 109.47196 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47151 * 300.00589 * 16 14 12 20 20 C 1.52997 * 109.47567 * 59.99514 * 5 4 2 21 21 C 1.52992 * 109.47234 * 300.00095 * 20 5 4 22 22 H 1.09003 * 109.47381 * 179.97438 * 21 20 5 23 23 C 1.53005 * 109.47301 * 299.99969 * 21 20 5 24 24 C 1.52997 * 109.47244 * 120.00011 * 2 1 3 25 25 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47657 * 299.99458 * 1 2 3 27 27 H 1.09003 * 109.47104 * 60.00082 * 1 2 3 28 28 H 1.08995 * 109.47135 * 59.99640 * 4 2 1 29 29 H 1.09003 * 109.46678 * 299.99603 * 4 2 1 30 30 H 1.09003 * 109.46849 * 299.99303 * 5 4 2 31 31 H 1.09001 * 109.47510 * 60.00620 * 9 8 6 32 32 H 1.09001 * 109.47429 * 300.00326 * 9 8 6 33 33 H 1.09001 * 109.47002 * 299.99655 * 10 9 8 34 34 H 1.08993 * 109.46955 * 60.00092 * 10 9 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 37 37 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46745 * 60.00271 * 20 5 4 39 39 H 1.08996 * 109.47244 * 180.02562 * 20 5 4 40 40 H 1.08995 * 109.47147 * 180.02562 * 23 21 20 41 41 H 1.08996 * 109.47013 * 299.99879 * 23 21 20 42 42 H 1.09003 * 109.46945 * 59.99681 * 23 21 20 43 43 H 1.09000 * 109.47116 * 300.00016 * 24 2 1 44 44 H 1.09003 * 109.47209 * 60.00211 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0724 -1.4325 -2.4791 7 8 3.2872 -1.8920 -3.2743 8 8 5.3921 -1.5552 -2.6915 9 6 5.8038 -2.2513 -3.8973 10 6 7.3317 -2.2920 -3.9663 11 6 7.7656 -3.0250 -5.2373 12 6 9.2705 -3.0645 -5.3055 13 1 9.8587 -2.6124 -4.5206 14 6 9.8965 -3.6787 -6.3694 15 7 9.1802 -4.2297 -7.3250 16 14 11.7619 -3.7283 -6.4536 17 1 12.2922 -4.4424 -5.2645 18 1 12.1830 -4.4396 -7.6873 19 1 12.2935 -2.3419 -6.4762 20 6 4.0795 -1.4432 0.0003 21 6 3.5695 -0.7221 1.2495 22 1 3.9321 -1.2364 2.1395 23 6 4.0799 0.7203 1.2499 24 6 2.0400 -0.7212 1.2492 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2073 -2.1392 29 1 1.6767 -1.7488 -1.2493 30 1 3.9336 0.3059 -1.2487 31 1 5.4142 -1.7275 -4.7703 32 1 5.4139 -3.2691 -3.8804 33 1 7.7219 -1.2744 -3.9831 34 1 7.7209 -2.8160 -3.0934 35 1 7.3754 -4.0426 -5.2210 36 1 7.3763 -2.5006 -6.1100 37 1 9.6206 -4.6614 -8.0737 38 1 3.7159 -2.4708 0.0000 39 1 5.1695 -1.4432 0.0008 40 1 3.7169 1.2339 2.1401 41 1 5.1699 0.7200 1.2501 42 1 3.7169 1.2344 0.3599 43 1 1.6766 -0.2074 2.1392 44 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780233035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:47 Heat of formation + Delta-G solvation = -155.654865 kcal Electronic energy + Delta-G solvation = -20632.765385 eV Core-core repulsion = 17547.426436 eV Total energy + Delta-G solvation = -3085.338949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87240 -39.93907 -37.81674 -35.95696 -34.15180 -33.71300 -32.89290 -29.07712 -27.66436 -27.33994 -25.85654 -24.40734 -22.26390 -22.19045 -21.44917 -19.67480 -18.75521 -18.36972 -17.64333 -17.43693 -16.51114 -16.14719 -15.86718 -15.45754 -15.01080 -14.81236 -14.55019 -14.39924 -14.02397 -13.85063 -13.73897 -13.44248 -13.06360 -12.80595 -12.69933 -12.54079 -12.52202 -12.43331 -12.15783 -12.08630 -12.04762 -11.89523 -11.70733 -11.53909 -11.43635 -11.31446 -11.17626 -10.97780 -10.82456 -10.58084 -8.22849 -6.34832 1.12264 1.40685 1.44288 1.52047 1.65005 2.40737 3.10862 3.45973 3.64640 3.66026 3.96210 4.02785 4.05158 4.11199 4.14709 4.30987 4.32734 4.38085 4.42037 4.57053 4.75771 4.76866 4.79678 4.84621 4.88049 4.97985 5.02916 5.03985 5.05526 5.15413 5.16902 5.26640 5.30006 5.37680 5.42924 5.47467 5.49616 5.52600 5.61309 5.65274 5.78279 6.17464 6.67588 6.81006 7.34769 8.89318 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039539 B = 0.002984 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.990493 B = 9381.985236 C = 9894.000215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.085 0.915 4 C -0.096 4.096 5 C -0.072 4.072 6 C 0.455 3.545 7 O -0.545 6.545 8 O -0.356 6.356 9 C 0.076 3.924 10 C -0.092 4.092 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C -0.106 4.106 21 C -0.084 4.084 22 H 0.085 0.915 23 C -0.154 4.154 24 C -0.110 4.110 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.067 0.933 35 H -0.005 1.005 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 10.711 20.448 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.134 4.134 5 C -0.091 4.091 6 C 0.300 3.700 7 O -0.435 6.435 8 O -0.272 6.272 9 C 0.003 3.997 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.144 4.144 21 C -0.103 4.103 22 H 0.103 0.897 23 C -0.211 4.211 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.070 10.465 20.030 27.162 hybrid contribution 0.772 -0.609 -1.069 1.452 sum -14.298 9.856 18.961 25.712 Atomic orbital electron populations 1.21809 0.94385 1.01897 1.02265 1.21164 0.96056 1.00050 0.93281 0.89640 1.21504 0.91061 1.01593 0.99198 1.21282 0.97660 1.01148 0.89027 1.24712 0.80227 0.76872 0.88171 1.90633 1.57441 1.47274 1.48119 1.86496 1.26105 1.70301 1.44300 1.23116 0.96712 0.95747 0.84157 1.21447 0.90509 1.01548 0.99496 1.18929 0.95733 0.94286 0.92152 1.21599 0.92683 1.36546 1.07437 0.91593 1.26036 1.04086 0.94713 0.95114 1.70098 1.37786 1.38093 1.11465 0.85426 0.78701 0.78796 0.77695 1.18971 1.20904 1.18975 1.21599 1.01434 0.98897 0.92474 1.21074 0.95740 0.96843 0.96610 0.89687 1.21980 1.01155 0.95452 1.02526 1.21663 0.94477 1.00775 0.97778 0.93070 0.91191 0.92841 0.92069 0.92421 0.85570 0.92161 0.92238 0.91426 0.91433 0.98615 0.98597 0.92643 0.92130 0.90695 0.91383 0.92675 0.92144 0.90097 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.09 -1.14 2.45 -10.80 -0.03 -1.17 16 3 H 0.09 0.98 6.43 -2.39 -0.02 0.97 16 4 C -0.10 -1.85 3.77 30.59 0.12 -1.73 16 5 C -0.07 -1.52 2.35 -11.54 -0.03 -1.55 16 6 C 0.46 14.11 7.25 71.24 0.52 14.63 16 7 O -0.54 -20.34 15.73 21.97 0.35 -19.99 16 8 O -0.36 -12.04 10.12 -51.45 -0.52 -12.56 16 9 C 0.08 2.95 5.47 71.98 0.39 3.34 16 10 C -0.09 -3.92 5.53 30.60 0.17 -3.75 16 11 C 0.03 1.40 4.97 29.85 0.15 1.55 16 12 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 13 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 16 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 C -0.11 -1.92 4.66 30.59 0.14 -1.78 16 21 C -0.08 -1.07 3.19 -10.81 -0.03 -1.10 16 22 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 23 C -0.15 -1.73 8.50 71.98 0.61 -1.12 16 24 C -0.11 -1.27 4.73 30.58 0.14 -1.13 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 29 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 30 H 0.13 2.23 6.43 -2.39 -0.02 2.21 16 31 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 32 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.68 4.81 -2.39 -0.01 0.67 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -66.96 346.79 6.58 -60.37 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.94 Total: 8.51 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.51 Total: -25.41 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.13 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.18 Total: -32.56 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.96 6.58 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.282 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds