Wall clock time and date at job start Mon Mar 30 2020 01:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46870 * 2 1 4 4 C 1.52994 * 109.47562 * 120.00170 * 2 1 3 5 5 C 1.53003 * 109.47081 * 60.00114 * 4 2 1 6 6 C 1.50706 * 109.47116 * 180.02562 * 5 4 2 7 7 O 1.20824 * 120.00104 * 359.97438 * 6 5 4 8 8 O 1.34230 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99614 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.52997 * 109.47087 * 60.00044 * 5 4 2 21 21 C 1.52994 * 109.47125 * 299.99929 * 20 5 4 22 22 H 1.09003 * 109.47577 * 300.00135 * 21 20 5 23 23 C 1.53006 * 109.47178 * 180.02562 * 21 20 5 24 24 C 1.52997 * 109.47049 * 240.00397 * 2 1 3 25 25 H 1.09001 * 109.47084 * 299.99157 * 1 2 3 26 26 H 1.08993 * 109.47550 * 60.00128 * 1 2 3 27 27 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47007 * 300.00175 * 4 2 1 29 29 H 1.09003 * 109.47577 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47028 * 299.99604 * 5 4 2 31 31 H 1.09002 * 109.47177 * 299.99820 * 9 8 6 32 32 H 1.09001 * 109.47399 * 59.99991 * 9 8 6 33 33 H 1.09002 * 109.47153 * 300.00058 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99688 * 10 9 8 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47003 * 60.00415 * 20 5 4 39 39 H 1.09005 * 109.46960 * 179.97438 * 20 5 4 40 40 H 1.09003 * 109.46891 * 299.99883 * 23 21 20 41 41 H 1.08989 * 109.47024 * 59.99655 * 23 21 20 42 42 H 1.08997 * 109.46845 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.47231 * 59.99628 * 24 2 1 44 44 H 1.09003 * 109.47546 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5302 -2.1638 1.2491 6 6 2.0321 -2.8741 2.4799 7 8 2.7268 -2.2869 3.2752 8 8 1.7082 -4.1593 2.6920 9 6 2.2274 -4.7795 3.8978 10 6 1.7558 -6.2333 3.9672 11 6 2.3034 -6.8871 5.2375 12 6 1.8384 -8.3189 5.3061 13 1 1.2150 -8.7224 4.5219 14 6 2.2096 -9.1141 6.3695 15 7 2.9692 -8.6229 7.3243 16 14 1.6326 -10.8887 6.4550 17 1 0.7952 -11.1947 5.2674 18 1 2.8112 -11.7920 6.4751 19 1 0.8333 -11.0904 7.6901 20 6 2.0401 -2.8849 -0.0002 21 6 1.5300 -2.1637 -1.2493 22 1 0.4400 -2.1637 -1.2493 23 6 2.0395 -2.8853 -2.4987 24 6 2.0400 -0.7212 -1.2493 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -0.2074 2.1391 29 1 3.1301 -0.7208 1.2494 30 1 0.4401 -2.1638 1.2492 31 1 3.3169 -4.7510 3.8809 32 1 1.8633 -4.2378 4.7708 33 1 0.6663 -6.2615 3.9843 34 1 2.1195 -6.7754 3.0943 35 1 3.3929 -6.8590 5.2199 36 1 1.9399 -6.3452 6.1106 37 1 3.2301 -9.1822 8.0726 38 1 3.1302 -2.8849 -0.0002 39 1 1.6772 -3.9128 0.0001 40 1 3.1295 -2.8856 -2.4989 41 1 1.6759 -3.9127 -2.4984 42 1 1.6764 -2.3711 -3.3885 43 1 1.6766 -0.2073 -2.1392 44 1 3.1300 -0.7208 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780233036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:50 Heat of formation + Delta-G solvation = -140.719284 kcal Electronic energy + Delta-G solvation = -20648.741523 eV Core-core repulsion = 17564.050230 eV Total energy + Delta-G solvation = -3084.691293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70358 -39.02417 -36.38996 -33.98948 -33.41573 -32.31699 -31.53679 -27.25580 -27.00333 -26.65626 -24.40476 -22.90534 -21.65354 -20.44593 -20.09100 -18.93138 -17.35272 -16.62374 -16.33917 -16.03267 -15.18744 -15.07425 -14.46877 -14.33094 -14.17699 -13.87415 -13.56489 -13.01866 -12.88585 -12.48450 -12.20505 -12.17079 -11.94879 -11.89716 -11.84698 -11.50131 -11.35282 -11.11670 -10.97962 -10.81424 -10.63507 -10.59074 -10.50658 -10.35176 -10.17902 -10.08296 -9.70735 -9.47375 -9.14192 -8.38928 -6.03432 -4.06398 2.39333 2.93976 3.30069 3.37475 3.41903 4.31468 4.38725 4.41896 4.47133 4.78505 4.80131 4.95084 5.04582 5.05117 5.13624 5.24010 5.32577 5.41041 5.41172 5.44051 5.57456 5.59916 5.63393 5.66367 5.68222 5.75520 5.84576 5.89878 5.95863 6.01836 6.03557 6.07605 6.12174 6.23961 6.55346 6.55361 6.88215 7.00300 7.60950 7.71889 7.94963 7.99930 8.36433 9.00176 9.57936 11.08093 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.003050 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.450680 B = 9176.930673 C = 9650.395412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 H 0.074 0.926 4 C -0.099 4.099 5 C -0.080 4.080 6 C 0.459 3.541 7 O -0.513 6.513 8 O -0.357 6.357 9 C 0.067 3.933 10 C -0.108 4.108 11 C 0.023 3.977 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.107 4.107 21 C -0.092 4.092 22 H 0.076 0.924 23 C -0.148 4.148 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 16.970 -18.719 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.099 4.099 6 C 0.302 3.698 7 O -0.402 6.402 8 O -0.274 6.274 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.014 4.014 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.144 4.144 21 C -0.110 4.110 22 H 0.095 0.905 23 C -0.205 4.205 24 C -0.149 4.149 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.480 17.055 -18.286 25.246 hybrid contribution -0.129 -0.977 0.434 1.077 sum -3.608 16.077 -17.852 24.293 Atomic orbital electron populations 1.21982 0.95234 1.02245 1.01688 1.21116 0.96024 0.99257 0.94518 0.90763 1.21468 1.01572 0.92509 0.98100 1.21111 1.02746 0.95147 0.90938 1.23687 0.77757 0.81055 0.87345 1.90643 1.35745 1.67079 1.46723 1.86498 1.69601 1.25740 1.45525 1.23482 0.98789 0.95040 0.83255 1.21751 1.01095 0.89880 1.01870 1.19056 0.96523 0.95217 0.90582 1.21215 1.31557 0.96073 1.07025 0.92375 1.25038 0.95118 0.98717 0.95653 1.69979 1.36215 1.36374 1.10809 0.86491 0.78525 0.84728 0.78002 1.19655 1.20976 1.20970 1.21598 1.01364 0.99633 0.91845 1.21170 1.00814 0.94691 0.94332 0.90536 1.21824 1.01304 1.00440 0.96949 1.21670 1.00780 0.95082 0.97373 0.92624 0.92684 0.91976 0.91026 0.90970 0.87417 0.91633 0.91636 0.92185 0.92186 0.96252 0.96256 0.92952 0.91357 0.90219 0.92656 0.92383 0.92688 0.91846 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.50 37.16 0.32 -0.75 16 2 C -0.09 -0.68 3.19 -90.62 -0.29 -0.97 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.10 -0.98 4.02 -26.73 -0.11 -1.09 16 5 C -0.08 -0.88 2.35 -91.77 -0.22 -1.10 16 6 C 0.46 7.11 7.26 36.01 0.26 7.37 16 7 O -0.51 -9.39 15.73 -18.75 -0.29 -9.69 16 8 O -0.36 -6.10 10.12 -39.26 -0.40 -6.49 16 9 C 0.07 1.28 5.47 37.16 0.20 1.48 16 10 C -0.11 -2.29 5.53 -26.74 -0.15 -2.43 16 11 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 12 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 C -0.11 -1.04 4.42 -26.74 -0.12 -1.16 16 21 C -0.09 -0.70 2.44 -90.62 -0.22 -0.92 16 22 H 0.08 0.55 6.43 -51.93 -0.33 0.22 16 23 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 24 C -0.11 -0.79 4.73 -26.73 -0.13 -0.91 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 4.81 -51.93 -0.25 0.19 16 28 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16 31 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 32 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.42 8.14 -51.94 -0.42 -0.01 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -31.09 346.80 -8.47 -39.55 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -8.06 Total: -4.68 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.65 Total: -14.28 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.69 Total: -16.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.09 -8.47 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.167 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds