Wall clock time and date at job start Mon Mar 30 2020 01:05:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.46870 * 2 1
4 4 C 1.52994 * 109.47562 * 120.00170 * 2 1 3
5 5 C 1.53003 * 109.47081 * 60.00114 * 4 2 1
6 6 C 1.50706 * 109.47116 * 180.02562 * 5 4 2
7 7 O 1.20824 * 120.00104 * 359.97438 * 6 5 4
8 8 O 1.34230 * 119.99717 * 180.02562 * 6 5 4
9 9 C 1.45199 * 116.99614 * 179.97438 * 8 6 5
10 10 C 1.52997 * 109.47075 * 179.97438 * 9 8 6
11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8
12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9
13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10
14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10
15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11
16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12
18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12
19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12
20 20 C 1.52997 * 109.47087 * 60.00044 * 5 4 2
21 21 C 1.52994 * 109.47125 * 299.99929 * 20 5 4
22 22 H 1.09003 * 109.47577 * 300.00135 * 21 20 5
23 23 C 1.53006 * 109.47178 * 180.02562 * 21 20 5
24 24 C 1.52997 * 109.47049 * 240.00397 * 2 1 3
25 25 H 1.09001 * 109.47084 * 299.99157 * 1 2 3
26 26 H 1.08993 * 109.47550 * 60.00128 * 1 2 3
27 27 H 1.09005 * 109.46870 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47007 * 300.00175 * 4 2 1
29 29 H 1.09003 * 109.47577 * 180.02562 * 4 2 1
30 30 H 1.09003 * 109.47028 * 299.99604 * 5 4 2
31 31 H 1.09002 * 109.47177 * 299.99820 * 9 8 6
32 32 H 1.09001 * 109.47399 * 59.99991 * 9 8 6
33 33 H 1.09002 * 109.47153 * 300.00058 * 10 9 8
34 34 H 1.08998 * 109.47533 * 59.99688 * 10 9 8
35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9
36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9
37 37 H 0.96996 * 119.99885 * 179.97438 * 15 14 12
38 38 H 1.09003 * 109.47003 * 60.00415 * 20 5 4
39 39 H 1.09005 * 109.46960 * 179.97438 * 20 5 4
40 40 H 1.09003 * 109.46891 * 299.99883 * 23 21 20
41 41 H 1.08989 * 109.47024 * 59.99655 * 23 21 20
42 42 H 1.08997 * 109.46845 * 180.02562 * 23 21 20
43 43 H 1.09001 * 109.47231 * 59.99628 * 24 2 1
44 44 H 1.09003 * 109.47546 * 179.97438 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7212 1.2491
5 6 1.5302 -2.1638 1.2491
6 6 2.0321 -2.8741 2.4799
7 8 2.7268 -2.2869 3.2752
8 8 1.7082 -4.1593 2.6920
9 6 2.2274 -4.7795 3.8978
10 6 1.7558 -6.2333 3.9672
11 6 2.3034 -6.8871 5.2375
12 6 1.8384 -8.3189 5.3061
13 1 1.2150 -8.7224 4.5219
14 6 2.2096 -9.1141 6.3695
15 7 2.9692 -8.6229 7.3243
16 14 1.6326 -10.8887 6.4550
17 1 0.7952 -11.1947 5.2674
18 1 2.8112 -11.7920 6.4751
19 1 0.8333 -11.0904 7.6901
20 6 2.0401 -2.8849 -0.0002
21 6 1.5300 -2.1637 -1.2493
22 1 0.4400 -2.1637 -1.2493
23 6 2.0395 -2.8853 -2.4987
24 6 2.0400 -0.7212 -1.2493
25 1 -0.3633 0.5137 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3633 -1.0277 -0.0005
28 1 1.6768 -0.2074 2.1391
29 1 3.1301 -0.7208 1.2494
30 1 0.4401 -2.1638 1.2492
31 1 3.3169 -4.7510 3.8809
32 1 1.8633 -4.2378 4.7708
33 1 0.6663 -6.2615 3.9843
34 1 2.1195 -6.7754 3.0943
35 1 3.3929 -6.8590 5.2199
36 1 1.9399 -6.3452 6.1106
37 1 3.2301 -9.1822 8.0726
38 1 3.1302 -2.8849 -0.0002
39 1 1.6772 -3.9128 0.0001
40 1 3.1295 -2.8856 -2.4989
41 1 1.6759 -3.9127 -2.4984
42 1 1.6764 -2.3711 -3.3885
43 1 1.6766 -0.2073 -2.1392
44 1 3.1300 -0.7208 -1.2496
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000780233036.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:05:50
Heat of formation + Delta-G solvation = -140.719284 kcal
Electronic energy + Delta-G solvation = -20648.741523 eV
Core-core repulsion = 17564.050230 eV
Total energy + Delta-G solvation = -3084.691293 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.70358 -39.02417 -36.38996 -33.98948 -33.41573 -32.31699 -31.53679 -27.25580
-27.00333 -26.65626 -24.40476 -22.90534 -21.65354 -20.44593 -20.09100 -18.93138
-17.35272 -16.62374 -16.33917 -16.03267 -15.18744 -15.07425 -14.46877 -14.33094
-14.17699 -13.87415 -13.56489 -13.01866 -12.88585 -12.48450 -12.20505 -12.17079
-11.94879 -11.89716 -11.84698 -11.50131 -11.35282 -11.11670 -10.97962 -10.81424
-10.63507 -10.59074 -10.50658 -10.35176 -10.17902 -10.08296 -9.70735 -9.47375
-9.14192 -8.38928 -6.03432 -4.06398 2.39333 2.93976 3.30069 3.37475
3.41903 4.31468 4.38725 4.41896 4.47133 4.78505 4.80131 4.95084
5.04582 5.05117 5.13624 5.24010 5.32577 5.41041 5.41172 5.44051
5.57456 5.59916 5.63393 5.66367 5.68222 5.75520 5.84576 5.89878
5.95863 6.01836 6.03557 6.07605 6.12174 6.23961 6.55346 6.55361
6.88215 7.00300 7.60950 7.71889 7.94963 7.99930 8.36433 9.00176
9.57936 11.08093
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.033749 B = 0.003050 C = 0.002901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.450680 B = 9176.930673 C = 9650.395412
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.091 4.091
3 H 0.074 0.926
4 C -0.099 4.099
5 C -0.080 4.080
6 C 0.459 3.541
7 O -0.513 6.513
8 O -0.357 6.357
9 C 0.067 3.933
10 C -0.108 4.108
11 C 0.023 3.977
12 C -0.520 4.520
13 H 0.058 0.942
14 C 0.056 3.944
15 N -0.895 5.895
16 Si 0.895 3.105
17 H -0.272 1.272
18 H -0.284 1.284
19 H -0.284 1.284
20 C -0.107 4.107
21 C -0.092 4.092
22 H 0.076 0.924
23 C -0.148 4.148
24 C -0.112 4.112
25 H 0.055 0.945
26 H 0.054 0.946
27 H 0.061 0.939
28 H 0.071 0.929
29 H 0.072 0.928
30 H 0.108 0.892
31 H 0.065 0.935
32 H 0.065 0.935
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.019 0.981
36 H 0.019 0.981
37 H 0.261 0.739
38 H 0.068 0.932
39 H 0.079 0.921
40 H 0.054 0.946
41 H 0.057 0.943
42 H 0.054 0.946
43 H 0.063 0.937
44 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.781 16.970 -18.719 25.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.109 4.109
3 H 0.092 0.908
4 C -0.136 4.136
5 C -0.099 4.099
6 C 0.302 3.698
7 O -0.402 6.402
8 O -0.274 6.274
9 C -0.006 4.006
10 C -0.146 4.146
11 C -0.014 4.014
12 C -0.559 4.559
13 H 0.076 0.924
14 C -0.145 4.145
15 N -0.534 5.534
16 Si 0.723 3.277
17 H -0.197 1.197
18 H -0.210 1.210
19 H -0.210 1.210
20 C -0.144 4.144
21 C -0.110 4.110
22 H 0.095 0.905
23 C -0.205 4.205
24 C -0.149 4.149
25 H 0.074 0.926
26 H 0.073 0.927
27 H 0.080 0.920
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.126 0.874
31 H 0.084 0.916
32 H 0.084 0.916
33 H 0.078 0.922
34 H 0.078 0.922
35 H 0.037 0.963
36 H 0.037 0.963
37 H 0.070 0.930
38 H 0.086 0.914
39 H 0.098 0.902
40 H 0.073 0.927
41 H 0.076 0.924
42 H 0.073 0.927
43 H 0.082 0.918
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -3.480 17.055 -18.286 25.246
hybrid contribution -0.129 -0.977 0.434 1.077
sum -3.608 16.077 -17.852 24.293
Atomic orbital electron populations
1.21982 0.95234 1.02245 1.01688 1.21116 0.96024 0.99257 0.94518
0.90763 1.21468 1.01572 0.92509 0.98100 1.21111 1.02746 0.95147
0.90938 1.23687 0.77757 0.81055 0.87345 1.90643 1.35745 1.67079
1.46723 1.86498 1.69601 1.25740 1.45525 1.23482 0.98789 0.95040
0.83255 1.21751 1.01095 0.89880 1.01870 1.19056 0.96523 0.95217
0.90582 1.21215 1.31557 0.96073 1.07025 0.92375 1.25038 0.95118
0.98717 0.95653 1.69979 1.36215 1.36374 1.10809 0.86491 0.78525
0.84728 0.78002 1.19655 1.20976 1.20970 1.21598 1.01364 0.99633
0.91845 1.21170 1.00814 0.94691 0.94332 0.90536 1.21824 1.01304
1.00440 0.96949 1.21670 1.00780 0.95082 0.97373 0.92624 0.92684
0.91976 0.91026 0.90970 0.87417 0.91633 0.91636 0.92185 0.92186
0.96252 0.96256 0.92952 0.91357 0.90219 0.92656 0.92383 0.92688
0.91846 0.91795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 8.50 37.16 0.32 -0.75 16
2 C -0.09 -0.68 3.19 -90.62 -0.29 -0.97 16
3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
4 C -0.10 -0.98 4.02 -26.73 -0.11 -1.09 16
5 C -0.08 -0.88 2.35 -91.77 -0.22 -1.10 16
6 C 0.46 7.11 7.26 36.01 0.26 7.37 16
7 O -0.51 -9.39 15.73 -18.75 -0.29 -9.69 16
8 O -0.36 -6.10 10.12 -39.26 -0.40 -6.49 16
9 C 0.07 1.28 5.47 37.16 0.20 1.48 16
10 C -0.11 -2.29 5.53 -26.74 -0.15 -2.43 16
11 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16
12 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16
13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16
14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16
15 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16
16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16
17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16
19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16
20 C -0.11 -1.04 4.42 -26.74 -0.12 -1.16 16
21 C -0.09 -0.70 2.44 -90.62 -0.22 -0.92 16
22 H 0.08 0.55 6.43 -51.93 -0.33 0.22 16
23 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16
24 C -0.11 -0.79 4.73 -26.73 -0.13 -0.91 16
25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
27 H 0.06 0.43 4.81 -51.93 -0.25 0.19 16
28 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16
29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16
30 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16
31 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16
32 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
39 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16
40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.06 0.42 8.14 -51.94 -0.42 -0.01 16
42 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 346.80 15.07 5.23 5.23
Total: -1.00 -31.09 346.80 -8.47 -39.55
By element:
Atomic # 1 Polarization: 3.38 SS G_CDS: -8.06 Total: -4.68 kcal
Atomic # 6 Polarization: -13.62 SS G_CDS: -0.65 Total: -14.28 kcal
Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal
Atomic # 8 Polarization: -15.49 SS G_CDS: -0.69 Total: -16.18 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -31.09 -8.47 -39.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000780233036.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.167 kcal
(2) G-P(sol) polarization free energy of solvation -31.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds