Wall clock time and date at job start Mon Mar 30 2020 01:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46870 * 2 1 4 4 C 1.52994 * 109.47562 * 120.00170 * 2 1 3 5 5 C 1.53003 * 109.47081 * 60.00114 * 4 2 1 6 6 C 1.50706 * 109.47116 * 180.02562 * 5 4 2 7 7 O 1.20824 * 120.00104 * 359.97438 * 6 5 4 8 8 O 1.34230 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99614 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.52997 * 109.47087 * 60.00044 * 5 4 2 21 21 C 1.52994 * 109.47125 * 299.99929 * 20 5 4 22 22 H 1.09003 * 109.47577 * 300.00135 * 21 20 5 23 23 C 1.53006 * 109.47178 * 180.02562 * 21 20 5 24 24 C 1.52997 * 109.47049 * 240.00397 * 2 1 3 25 25 H 1.09001 * 109.47084 * 299.99157 * 1 2 3 26 26 H 1.08993 * 109.47550 * 60.00128 * 1 2 3 27 27 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47007 * 300.00175 * 4 2 1 29 29 H 1.09003 * 109.47577 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47028 * 299.99604 * 5 4 2 31 31 H 1.09002 * 109.47177 * 299.99820 * 9 8 6 32 32 H 1.09001 * 109.47399 * 59.99991 * 9 8 6 33 33 H 1.09002 * 109.47153 * 300.00058 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99688 * 10 9 8 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47003 * 60.00415 * 20 5 4 39 39 H 1.09005 * 109.46960 * 179.97438 * 20 5 4 40 40 H 1.09003 * 109.46891 * 299.99883 * 23 21 20 41 41 H 1.08989 * 109.47024 * 59.99655 * 23 21 20 42 42 H 1.08997 * 109.46845 * 180.02562 * 23 21 20 43 43 H 1.09001 * 109.47231 * 59.99628 * 24 2 1 44 44 H 1.09003 * 109.47546 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5302 -2.1638 1.2491 6 6 2.0321 -2.8741 2.4799 7 8 2.7268 -2.2869 3.2752 8 8 1.7082 -4.1593 2.6920 9 6 2.2274 -4.7795 3.8978 10 6 1.7558 -6.2333 3.9672 11 6 2.3034 -6.8871 5.2375 12 6 1.8384 -8.3189 5.3061 13 1 1.2150 -8.7224 4.5219 14 6 2.2096 -9.1141 6.3695 15 7 2.9692 -8.6229 7.3243 16 14 1.6326 -10.8887 6.4550 17 1 0.7952 -11.1947 5.2674 18 1 2.8112 -11.7920 6.4751 19 1 0.8333 -11.0904 7.6901 20 6 2.0401 -2.8849 -0.0002 21 6 1.5300 -2.1637 -1.2493 22 1 0.4400 -2.1637 -1.2493 23 6 2.0395 -2.8853 -2.4987 24 6 2.0400 -0.7212 -1.2493 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -0.2074 2.1391 29 1 3.1301 -0.7208 1.2494 30 1 0.4401 -2.1638 1.2492 31 1 3.3169 -4.7510 3.8809 32 1 1.8633 -4.2378 4.7708 33 1 0.6663 -6.2615 3.9843 34 1 2.1195 -6.7754 3.0943 35 1 3.3929 -6.8590 5.2199 36 1 1.9399 -6.3452 6.1106 37 1 3.2301 -9.1822 8.0726 38 1 3.1302 -2.8849 -0.0002 39 1 1.6772 -3.9128 0.0001 40 1 3.1295 -2.8856 -2.4989 41 1 1.6759 -3.9127 -2.4984 42 1 1.6764 -2.3711 -3.3885 43 1 1.6766 -0.2073 -2.1392 44 1 3.1300 -0.7208 -1.2496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780233036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:50 Heat of formation + Delta-G solvation = -155.760027 kcal Electronic energy + Delta-G solvation = -20649.393739 eV Core-core repulsion = 17564.050230 eV Total energy + Delta-G solvation = -3085.343509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87299 -39.93943 -37.81764 -35.95759 -34.05328 -33.79371 -32.92650 -29.06762 -27.66984 -27.31102 -25.84046 -24.43262 -22.42436 -22.19278 -21.26595 -19.65375 -18.75755 -18.40349 -17.69504 -17.44733 -16.50250 -16.13712 -15.92032 -15.38995 -15.02647 -14.83747 -14.50970 -14.37813 -13.96110 -13.81150 -13.74497 -13.50263 -13.13557 -12.86229 -12.67267 -12.54175 -12.49489 -12.43762 -12.18828 -12.10276 -12.04031 -11.83018 -11.73463 -11.55128 -11.43796 -11.28232 -11.18007 -10.95827 -10.82312 -10.59455 -8.23142 -6.34918 1.12132 1.40903 1.41234 1.54795 1.65290 2.40603 3.10765 3.44209 3.64542 3.67229 3.96165 4.03359 4.06501 4.11309 4.13938 4.31097 4.32405 4.38378 4.39967 4.57296 4.76156 4.76878 4.79453 4.84126 4.87707 4.98558 5.03750 5.05325 5.06182 5.11196 5.18931 5.27021 5.29975 5.36898 5.42379 5.48114 5.49850 5.52902 5.61232 5.64848 5.78422 6.17450 6.67479 6.81282 7.34820 8.89410 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.003050 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.450680 B = 9176.930673 C = 9650.395412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.097 4.097 5 C -0.072 4.072 6 C 0.455 3.545 7 O -0.544 6.544 8 O -0.356 6.356 9 C 0.076 3.924 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.105 4.105 21 C -0.086 4.086 22 H 0.086 0.914 23 C -0.147 4.147 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.067 0.933 35 H -0.004 1.004 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 16.971 -20.813 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.135 4.135 5 C -0.091 4.091 6 C 0.300 3.700 7 O -0.435 6.435 8 O -0.272 6.272 9 C 0.003 3.997 10 C -0.130 4.130 11 C -0.012 4.012 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.183 1.183 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.105 4.105 22 H 0.104 0.896 23 C -0.204 4.204 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.867 17.067 -20.404 27.043 hybrid contribution 0.333 -0.910 1.093 1.461 sum -4.534 16.157 -19.311 25.584 Atomic orbital electron populations 1.21986 0.94415 1.02417 1.02319 1.21095 0.96622 0.99355 0.93243 0.89868 1.21476 1.00767 0.91958 0.99264 1.21280 1.03661 0.95149 0.89015 1.24713 0.76900 0.80178 0.88185 1.90632 1.37262 1.67429 1.48130 1.86496 1.69564 1.26854 1.44315 1.23115 0.98343 0.94109 0.84154 1.21446 1.01209 0.90856 0.99506 1.18939 0.95077 0.94991 0.92160 1.21650 1.31754 0.97200 1.07425 0.91610 1.26034 0.95057 1.03766 0.95143 1.70111 1.37414 1.38363 1.11556 0.85319 0.78231 0.78537 0.78480 1.18279 1.20374 1.20361 1.21619 1.00853 0.99551 0.92262 1.21153 1.01321 0.94764 0.93224 0.89551 1.21817 1.01109 1.00399 0.97114 1.21670 1.00585 0.94713 0.97719 0.92862 0.91275 0.91994 0.92000 0.92329 0.85558 0.92232 0.92152 0.91415 0.91450 0.98590 0.98572 0.92662 0.92260 0.90751 0.93022 0.92669 0.91332 0.90106 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.50 71.98 0.61 -1.11 16 2 C -0.08 -1.10 3.19 -10.80 -0.03 -1.13 16 3 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.10 -1.85 4.02 30.59 0.12 -1.73 16 5 C -0.07 -1.52 2.35 -11.54 -0.03 -1.54 16 6 C 0.46 14.11 7.26 71.24 0.52 14.62 16 7 O -0.54 -20.31 15.73 21.97 0.35 -19.96 16 8 O -0.36 -12.06 10.12 -51.42 -0.52 -12.58 16 9 C 0.08 2.95 5.47 71.98 0.39 3.34 16 10 C -0.09 -3.92 5.53 30.59 0.17 -3.76 16 11 C 0.03 1.37 4.97 29.84 0.15 1.51 16 12 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 13 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 14 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 16 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 C -0.11 -1.92 4.42 30.59 0.14 -1.78 16 21 C -0.09 -1.11 2.44 -10.79 -0.03 -1.14 16 22 H 0.09 0.98 6.43 -2.39 -0.02 0.97 16 23 C -0.15 -1.74 9.20 71.98 0.66 -1.08 16 24 C -0.11 -1.27 4.73 30.59 0.14 -1.13 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.69 4.81 -2.38 -0.01 0.68 16 28 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 30 H 0.13 2.22 6.43 -2.39 -0.02 2.21 16 31 H 0.06 2.35 8.13 -2.39 -0.02 2.34 16 32 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.44 8.11 -2.38 -0.02 1.42 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -66.94 346.80 6.58 -60.35 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.94 Total: 8.29 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.51 Total: -25.32 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.17 Total: -32.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.94 6.58 -60.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780233036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.408 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds