Wall clock time and date at job start Mon Mar 30 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 108.85745 * 2 1 4 4 O 1.20824 * 120.00323 * 241.43537 * 3 2 1 5 5 O 1.34232 * 120.00106 * 61.43727 * 3 2 1 6 6 C 1.45197 * 116.99983 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46833 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46984 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47105 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00165 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99885 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00252 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47046 * 60.00031 * 13 11 9 15 15 H 1.48504 * 109.47354 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47076 * 300.00279 * 13 11 9 17 17 C 1.54069 * 108.79365 * 118.51463 * 2 1 3 18 18 C 1.54073 * 112.81490 * 79.00586 * 17 2 1 19 19 C 1.50470 * 112.50265 * 318.28121 * 18 17 2 20 20 C 1.54241 * 108.52691 * 94.14557 * 19 18 17 21 21 C 1.45539 * 112.40040 * 280.02485 * 20 19 18 22 22 C 1.50470 * 108.87738 * 241.43737 * 2 1 3 23 23 H 1.09006 * 109.46709 * 46.04292 * 1 2 3 24 24 H 1.08994 * 109.47501 * 166.03749 * 1 2 3 25 25 H 1.08991 * 109.47055 * 286.04448 * 1 2 3 26 26 H 1.08997 * 109.46930 * 60.00535 * 6 5 3 27 27 H 1.09000 * 109.47128 * 299.99714 * 6 5 3 28 28 H 1.09006 * 109.47110 * 300.00337 * 7 6 5 29 29 H 1.08997 * 109.47336 * 59.99932 * 7 6 5 30 30 H 1.08996 * 109.47259 * 299.99900 * 8 7 6 31 31 H 1.08997 * 109.47239 * 59.99751 * 8 7 6 32 32 H 0.96999 * 120.00324 * 180.02562 * 12 11 9 33 33 H 1.08998 * 108.81382 * 199.86399 * 17 2 1 34 34 H 1.08997 * 108.81413 * 318.14670 * 17 2 1 35 35 H 1.09008 * 108.87178 * 197.50198 * 18 17 2 36 36 H 1.09002 * 108.87692 * 79.06432 * 18 17 2 37 37 H 1.08998 * 109.62302 * 334.43548 * 19 18 17 38 38 H 1.08997 * 109.62881 * 213.86320 * 19 18 17 39 39 H 1.09003 * 108.89594 * 159.27128 * 20 19 18 40 40 H 1.09001 * 108.89560 * 40.77922 * 20 19 18 41 41 H 1.08998 * 108.89726 * 301.17974 * 21 20 19 42 42 H 1.09003 * 108.89152 * 182.69581 * 21 20 19 43 43 H 1.09000 * 109.63170 * 93.18995 * 22 2 1 44 44 H 1.09004 * 109.63450 * 213.77521 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0171 1.4261 0.0000 4 8 2.6858 1.8361 -0.9190 5 8 1.7080 2.2409 1.0210 6 6 2.2106 3.6014 0.9539 7 6 1.7605 4.3731 2.1961 8 6 2.2895 5.8070 2.1252 9 6 1.8457 6.5673 3.3484 10 1 1.2466 6.0766 4.1012 11 6 2.2053 7.8888 3.5068 12 7 2.9353 8.4861 2.5903 13 14 1.6558 8.8310 5.0233 14 1 2.1887 8.1659 6.2393 15 1 2.1691 10.2228 4.9544 16 1 0.1721 8.8535 5.0813 17 6 2.0264 -0.6963 1.2816 18 6 1.9624 -2.2329 1.1897 19 6 0.6981 -2.7186 0.5342 20 6 0.9739 -2.9261 -0.9691 21 6 0.9370 -1.6783 -1.7172 22 6 2.0168 -0.6807 -1.2505 23 1 -0.3633 0.7134 -0.7398 24 1 -0.3634 -0.9972 -0.2479 25 1 -0.3633 0.2840 0.9876 26 1 1.8198 4.0895 0.0612 27 1 3.2997 3.5848 0.9118 28 1 0.6714 4.3896 2.2387 29 1 2.1516 3.8849 3.0887 30 1 3.3785 5.7908 2.0823 31 1 1.8981 6.2949 1.2326 32 1 3.1886 9.4157 2.7019 33 1 3.0582 -0.3979 1.4667 34 1 1.4121 -0.3684 2.1202 35 1 2.0205 -2.6490 2.1956 36 1 2.8171 -2.5876 0.6136 37 1 -0.0895 -1.9760 0.6629 38 1 0.3917 -3.6629 0.9842 39 1 0.2229 -3.6037 -1.3755 40 1 1.9576 -3.3802 -1.0880 41 1 -0.0442 -1.2205 -1.5920 42 1 1.0906 -1.8958 -2.7742 43 1 2.1894 0.0627 -2.0287 44 1 2.9428 -1.2157 -1.0395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781302269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:55 Heat of formation + Delta-G solvation = -101.084647 kcal Electronic energy + Delta-G solvation = -21075.392901 eV Core-core repulsion = 17992.420295 eV Total energy + Delta-G solvation = -3082.972606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17615 -39.16068 -36.40488 -34.02748 -33.39607 -32.63298 -31.62983 -28.29793 -27.18108 -25.15678 -24.91404 -23.18255 -21.41580 -20.40349 -20.30030 -18.61004 -17.28372 -16.95329 -16.28402 -16.16424 -15.60218 -14.99661 -14.59024 -14.46980 -14.32090 -13.70370 -13.27263 -13.14900 -12.91342 -12.53092 -12.42817 -12.19708 -12.01685 -11.87994 -11.58360 -11.35111 -10.94638 -10.90457 -10.76980 -10.64056 -10.61131 -10.52219 -10.50884 -10.34677 -10.29813 -9.82791 -9.70386 -9.44623 -9.16704 -8.38209 -6.03053 -4.06251 2.39540 2.93463 3.32550 3.36808 3.39433 4.32803 4.34616 4.43397 4.55804 4.66784 4.81002 4.89648 4.96460 5.04219 5.10707 5.32550 5.32717 5.39767 5.45206 5.59593 5.63205 5.65441 5.67142 5.74820 5.77111 5.86853 5.91412 5.96601 5.99783 6.01083 6.04635 6.09568 6.25011 6.28547 6.55321 6.55853 6.88233 7.00245 7.60586 7.71990 7.94990 7.99891 8.36461 8.99829 9.57927 11.08406 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.003146 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.000561 B = 8898.964279 C = 9215.266918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.043 4.043 3 C 0.462 3.538 4 O -0.513 6.513 5 O -0.353 6.353 6 C 0.066 3.934 7 C -0.108 4.108 8 C 0.024 3.976 9 C -0.522 4.522 10 H 0.057 0.943 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.109 4.109 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -23.888 -6.078 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.044 4.044 3 C 0.304 3.696 4 O -0.401 6.401 5 O -0.270 6.270 6 C -0.007 4.007 7 C -0.146 4.146 8 C -0.013 4.013 9 C -0.560 4.560 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.179 4.179 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.146 4.146 23 H 0.077 0.923 24 H 0.123 0.877 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.486 -23.537 -6.375 24.794 hybrid contribution 0.025 0.854 0.692 1.100 sum -4.461 -22.682 -5.683 23.805 Atomic orbital electron populations 1.22777 0.92499 1.04175 1.03317 1.20217 0.97925 0.88126 0.98143 1.23718 0.77082 0.88885 0.79877 1.90623 1.36595 1.76747 1.36167 1.86505 1.70432 1.24986 1.45042 1.23489 0.98981 0.76777 1.01416 1.21749 1.01161 0.97589 0.94054 1.19045 0.96578 0.87985 0.97685 1.21141 1.33219 0.96003 1.05680 0.92482 1.25031 0.95107 0.97735 0.96588 1.69956 1.37128 1.12122 1.34188 0.86603 0.79023 0.78836 0.83224 1.20170 1.21254 1.20170 1.21966 1.01958 0.95002 0.95406 1.21288 0.98325 0.94516 1.00977 1.21822 0.99084 1.01792 0.95232 1.20506 1.01886 0.97725 0.95420 1.20799 1.00672 0.96118 0.99804 1.21411 0.98701 0.98594 0.95935 0.92260 0.87724 0.91257 0.91659 0.91671 0.92196 0.92197 0.96276 0.96273 0.92830 0.91769 0.90474 0.91843 0.92014 0.89339 0.91992 0.92367 0.92254 0.89900 0.92055 0.89637 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 6.27 37.16 0.23 -1.41 16 2 C -0.04 -0.49 0.66 -156.37 -0.10 -0.59 16 3 C 0.46 7.27 6.33 36.00 0.23 7.50 16 4 O -0.51 -9.47 14.99 -18.75 -0.28 -9.75 16 5 O -0.35 -6.06 10.01 -39.26 -0.39 -6.46 16 6 C 0.07 1.27 5.47 37.16 0.20 1.47 16 7 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 8 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 13 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 C -0.11 -1.06 4.71 -25.61 -0.12 -1.18 16 18 C -0.11 -0.88 5.31 -27.43 -0.15 -1.03 16 19 C -0.14 -0.97 5.56 -27.35 -0.15 -1.12 16 20 C -0.12 -0.79 5.21 -29.60 -0.15 -0.95 16 21 C -0.14 -1.07 5.14 -29.60 -0.15 -1.22 16 22 C -0.11 -1.13 4.80 -27.35 -0.13 -1.26 16 23 H 0.06 0.60 8.05 -51.93 -0.42 0.19 16 24 H 0.10 0.78 2.67 -51.93 -0.14 0.64 16 25 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 26 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 27 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 34 H 0.08 0.78 7.72 -51.93 -0.40 0.38 16 35 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 37 H 0.09 0.60 4.25 -51.93 -0.22 0.38 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.41 7.47 -51.93 -0.39 0.02 16 41 H 0.08 0.61 4.83 -51.93 -0.25 0.36 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.06 6.66 -51.93 -0.35 0.71 16 44 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -31.15 332.13 -8.40 -39.55 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.45 Total: -3.34 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.99 Total: -15.34 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.67 Total: -16.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.15 -8.40 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781302269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.536 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds