Wall clock time and date at job start Mon Mar 30 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 108.85745 * 2 1 4 4 O 1.20824 * 120.00323 * 241.43537 * 3 2 1 5 5 O 1.34232 * 120.00106 * 61.43727 * 3 2 1 6 6 C 1.45197 * 116.99983 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46833 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46984 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47105 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00165 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99885 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00252 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47046 * 60.00031 * 13 11 9 15 15 H 1.48504 * 109.47354 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47076 * 300.00279 * 13 11 9 17 17 C 1.54069 * 108.79365 * 118.51463 * 2 1 3 18 18 C 1.54073 * 112.81490 * 79.00586 * 17 2 1 19 19 C 1.50470 * 112.50265 * 318.28121 * 18 17 2 20 20 C 1.54241 * 108.52691 * 94.14557 * 19 18 17 21 21 C 1.45539 * 112.40040 * 280.02485 * 20 19 18 22 22 C 1.50470 * 108.87738 * 241.43737 * 2 1 3 23 23 H 1.09006 * 109.46709 * 46.04292 * 1 2 3 24 24 H 1.08994 * 109.47501 * 166.03749 * 1 2 3 25 25 H 1.08991 * 109.47055 * 286.04448 * 1 2 3 26 26 H 1.08997 * 109.46930 * 60.00535 * 6 5 3 27 27 H 1.09000 * 109.47128 * 299.99714 * 6 5 3 28 28 H 1.09006 * 109.47110 * 300.00337 * 7 6 5 29 29 H 1.08997 * 109.47336 * 59.99932 * 7 6 5 30 30 H 1.08996 * 109.47259 * 299.99900 * 8 7 6 31 31 H 1.08997 * 109.47239 * 59.99751 * 8 7 6 32 32 H 0.96999 * 120.00324 * 180.02562 * 12 11 9 33 33 H 1.08998 * 108.81382 * 199.86399 * 17 2 1 34 34 H 1.08997 * 108.81413 * 318.14670 * 17 2 1 35 35 H 1.09008 * 108.87178 * 197.50198 * 18 17 2 36 36 H 1.09002 * 108.87692 * 79.06432 * 18 17 2 37 37 H 1.08998 * 109.62302 * 334.43548 * 19 18 17 38 38 H 1.08997 * 109.62881 * 213.86320 * 19 18 17 39 39 H 1.09003 * 108.89594 * 159.27128 * 20 19 18 40 40 H 1.09001 * 108.89560 * 40.77922 * 20 19 18 41 41 H 1.08998 * 108.89726 * 301.17974 * 21 20 19 42 42 H 1.09003 * 108.89152 * 182.69581 * 21 20 19 43 43 H 1.09000 * 109.63170 * 93.18995 * 22 2 1 44 44 H 1.09004 * 109.63450 * 213.77521 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0171 1.4261 0.0000 4 8 2.6858 1.8361 -0.9190 5 8 1.7080 2.2409 1.0210 6 6 2.2106 3.6014 0.9539 7 6 1.7605 4.3731 2.1961 8 6 2.2895 5.8070 2.1252 9 6 1.8457 6.5673 3.3484 10 1 1.2466 6.0766 4.1012 11 6 2.2053 7.8888 3.5068 12 7 2.9353 8.4861 2.5903 13 14 1.6558 8.8310 5.0233 14 1 2.1887 8.1659 6.2393 15 1 2.1691 10.2228 4.9544 16 1 0.1721 8.8535 5.0813 17 6 2.0264 -0.6963 1.2816 18 6 1.9624 -2.2329 1.1897 19 6 0.6981 -2.7186 0.5342 20 6 0.9739 -2.9261 -0.9691 21 6 0.9370 -1.6783 -1.7172 22 6 2.0168 -0.6807 -1.2505 23 1 -0.3633 0.7134 -0.7398 24 1 -0.3634 -0.9972 -0.2479 25 1 -0.3633 0.2840 0.9876 26 1 1.8198 4.0895 0.0612 27 1 3.2997 3.5848 0.9118 28 1 0.6714 4.3896 2.2387 29 1 2.1516 3.8849 3.0887 30 1 3.3785 5.7908 2.0823 31 1 1.8981 6.2949 1.2326 32 1 3.1886 9.4157 2.7019 33 1 3.0582 -0.3979 1.4667 34 1 1.4121 -0.3684 2.1202 35 1 2.0205 -2.6490 2.1956 36 1 2.8171 -2.5876 0.6136 37 1 -0.0895 -1.9760 0.6629 38 1 0.3917 -3.6629 0.9842 39 1 0.2229 -3.6037 -1.3755 40 1 1.9576 -3.3802 -1.0880 41 1 -0.0442 -1.2205 -1.5920 42 1 1.0906 -1.8958 -2.7742 43 1 2.1894 0.0627 -2.0287 44 1 2.9428 -1.2157 -1.0395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781302269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:54 Heat of formation + Delta-G solvation = -116.689027 kcal Electronic energy + Delta-G solvation = -21076.069558 eV Core-core repulsion = 17992.420295 eV Total energy + Delta-G solvation = -3083.649263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25767 -40.20033 -37.84375 -35.97073 -34.29779 -33.57345 -33.30335 -29.21361 -28.93193 -26.17033 -25.82109 -24.82176 -22.55521 -22.19883 -20.99491 -19.64030 -18.72492 -18.29506 -17.84663 -17.63494 -16.55138 -16.38742 -16.03635 -15.62690 -15.23947 -14.83567 -14.55703 -14.09628 -13.95548 -13.84680 -13.77701 -13.59669 -13.15826 -13.06493 -12.80794 -12.55186 -12.48832 -12.37182 -12.23015 -12.08483 -11.83057 -11.59582 -11.49013 -11.45191 -11.30615 -11.24782 -11.14585 -11.02754 -10.58512 -10.53126 -8.23145 -6.35307 1.10813 1.40483 1.44166 1.51881 1.63547 2.40496 3.10538 3.40201 3.58597 3.66178 3.94431 3.97516 4.02427 4.10634 4.17131 4.23438 4.31075 4.36390 4.39722 4.61453 4.71293 4.73721 4.75659 4.81808 4.93170 4.99620 5.01844 5.04734 5.09952 5.14954 5.26630 5.30346 5.37276 5.39734 5.42529 5.45292 5.50564 5.55794 5.60356 5.70979 5.77641 6.16823 6.65757 6.80424 7.34382 8.89033 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.003146 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.000561 B = 8898.964279 C = 9215.266918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.037 4.037 3 C 0.456 3.544 4 O -0.544 6.544 5 O -0.352 6.352 6 C 0.075 3.925 7 C -0.092 4.092 8 C 0.026 3.974 9 C -0.545 4.545 10 H 0.066 0.934 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.970 3.030 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.265 1.265 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.050 0.950 24 H 0.133 0.867 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.067 0.933 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -25.872 -4.955 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.038 4.038 3 C 0.301 3.699 4 O -0.434 6.434 5 O -0.268 6.268 6 C 0.002 3.998 7 C -0.129 4.129 8 C -0.011 4.011 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.794 3.206 14 H -0.190 1.190 15 H -0.209 1.209 16 H -0.189 1.189 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.179 4.179 20 C -0.155 4.155 21 C -0.168 4.168 22 C -0.147 4.147 23 H 0.069 0.931 24 H 0.150 0.850 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.013 0.987 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.039 -25.549 -5.250 26.773 hybrid contribution 0.552 1.447 0.278 1.573 sum -5.488 -24.102 -4.972 25.214 Atomic orbital electron populations 1.22861 0.90819 1.05707 1.03262 1.20409 0.99183 0.84828 0.99382 1.24819 0.76197 0.90170 0.78737 1.90610 1.38092 1.77555 1.37184 1.86503 1.70416 1.23973 1.45882 1.23123 0.98492 0.78061 1.00144 1.21441 1.01322 0.94920 0.95229 1.18928 0.95049 0.90873 0.96232 1.21597 1.33423 0.96765 1.06497 0.91568 1.26035 0.94969 0.98896 1.00043 1.70098 1.38329 1.12597 1.36424 0.85422 0.79030 0.77146 0.79003 1.18958 1.20905 1.18938 1.22002 1.00974 0.96840 0.94472 1.21277 0.99137 0.92335 1.01902 1.21833 0.98307 1.02526 0.95186 1.20506 1.02540 0.97184 0.95286 1.20781 0.99695 0.95938 1.00372 1.21417 0.99952 0.98594 0.94692 0.93064 0.84961 0.91128 0.92247 0.92342 0.91393 0.91450 0.98655 0.98615 0.92639 0.93216 0.90372 0.90761 0.91963 0.89251 0.90443 0.90694 0.92244 0.89282 0.91411 0.92096 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 6.27 71.98 0.45 -2.53 16 2 C -0.04 -0.81 0.66 -53.39 -0.04 -0.84 16 3 C 0.46 14.56 6.33 71.23 0.45 15.01 16 4 O -0.54 -20.78 14.99 21.97 0.33 -20.45 16 5 O -0.35 -12.11 10.01 -51.44 -0.52 -12.63 16 6 C 0.08 2.95 5.47 71.98 0.39 3.34 16 7 C -0.09 -3.90 5.53 30.59 0.17 -3.73 16 8 C 0.03 1.42 4.97 29.85 0.15 1.57 16 9 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 13 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 C -0.11 -1.99 4.71 31.32 0.15 -1.84 16 18 C -0.11 -1.44 5.31 30.14 0.16 -1.28 16 19 C -0.14 -1.46 5.56 30.20 0.17 -1.29 16 20 C -0.12 -1.22 5.21 28.74 0.15 -1.07 16 21 C -0.13 -1.75 5.14 28.73 0.15 -1.60 16 22 C -0.11 -2.19 4.80 30.19 0.15 -2.04 16 23 H 0.05 0.99 8.05 -2.38 -0.02 0.97 16 24 H 0.13 1.58 2.67 -2.39 -0.01 1.58 16 25 H 0.07 1.23 7.75 -2.39 -0.02 1.21 16 26 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 27 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 28 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.00 -0.29 8.14 -2.39 -0.02 -0.30 16 31 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.05 1.07 7.97 -2.39 -0.02 1.05 16 34 H 0.08 1.46 7.72 -2.39 -0.02 1.44 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 0.83 6.63 -2.39 -0.02 0.81 16 37 H 0.09 0.91 4.25 -2.39 -0.01 0.90 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.64 7.47 -2.39 -0.02 0.63 16 41 H 0.09 1.08 4.83 -2.39 -0.01 1.07 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.54 6.66 -2.39 -0.02 1.52 16 44 H 0.07 1.40 6.98 -2.39 -0.02 1.39 16 Total: -1.00 -67.75 332.13 6.28 -61.47 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.96 Total: 9.48 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.19 Total: -26.90 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.21 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.19 Total: -33.08 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.75 6.28 -61.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781302269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.218 kcal (2) G-P(sol) polarization free energy of solvation -67.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds