Wall clock time and date at job start Mon Mar 30 2020 00:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.52997 * 109.46817 * 64.99892 * 3 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 3 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 C 1.50699 * 109.47155 * 179.97438 * 7 6 5 10 10 O 1.20827 * 120.00172 * 239.99798 * 9 7 6 11 11 O 1.34231 * 120.00242 * 59.99333 * 9 7 6 12 12 C 1.45195 * 117.00446 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47423 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46841 * 180.02562 * 13 12 11 15 15 C 1.50709 * 109.46870 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99676 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47329 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46786 * 120.00449 * 19 17 15 22 22 H 1.48504 * 109.46605 * 239.99696 * 19 17 15 23 23 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 24 24 C 1.53000 * 109.47233 * 184.99697 * 3 2 1 25 25 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 26 26 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 27 27 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 30 30 H 1.08996 * 109.47853 * 300.00202 * 5 3 2 31 31 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 32 32 H 1.09000 * 109.47486 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 6 5 3 34 34 H 1.09000 * 109.47431 * 300.00782 * 12 11 9 35 35 H 1.08999 * 109.46793 * 60.00535 * 12 11 9 36 36 H 1.09004 * 109.46961 * 300.00137 * 13 12 11 37 37 H 1.08999 * 109.46966 * 60.00314 * 13 12 11 38 38 H 1.08995 * 109.47358 * 299.99412 * 14 13 12 39 39 H 1.08999 * 109.47313 * 60.00246 * 14 13 12 40 40 H 0.96998 * 119.99732 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 7 6 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 7 6 43 43 H 1.08992 * 109.47399 * 300.00166 * 24 3 2 44 44 H 1.09004 * 109.46724 * 60.00652 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5688 1.3077 7 6 3.6708 3.5700 1.1822 8 1 4.1050 3.0307 2.0241 9 6 4.1736 4.9906 1.1820 10 8 4.7923 5.4124 0.2337 11 8 3.9342 5.7876 2.2353 12 6 4.4488 7.1435 2.1665 13 6 4.0808 7.8944 3.4478 14 6 4.6226 9.3234 3.3748 15 6 4.2606 10.0628 4.6372 16 1 3.6999 9.5635 5.4136 17 6 4.6453 11.3766 4.8010 18 7 5.3277 11.9847 3.8553 19 14 4.1973 12.2928 6.3660 20 1 3.4342 11.3914 7.2662 21 1 5.4373 12.7406 7.0496 22 1 3.3649 13.4749 6.0264 23 6 4.0755 2.8860 -0.1251 24 6 3.5649 1.4443 -0.1256 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 0.5490 2.1253 1.3970 31 1 2.0699 1.5874 2.1492 32 1 1.8579 4.0559 2.2393 33 1 1.7116 4.1081 0.4659 34 1 5.5333 7.1157 2.0607 35 1 4.0131 7.6543 1.3078 36 1 2.9963 7.9223 3.5538 37 1 4.5168 7.3835 4.3062 38 1 5.7070 9.2959 3.2687 39 1 4.1862 9.8341 2.5164 40 1 5.5987 12.9089 3.9707 41 1 5.1618 2.8873 -0.2147 42 1 3.6412 3.4254 -0.9669 43 1 3.9995 0.9052 0.7161 44 1 3.8532 0.9570 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782401419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:35 Heat of formation + Delta-G solvation = -145.289742 kcal Electronic energy + Delta-G solvation = -20282.405943 eV Core-core repulsion = 17197.516460 eV Total energy + Delta-G solvation = -3084.889483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56463 -38.78391 -36.42472 -34.27672 -33.94258 -31.71952 -31.07603 -29.68416 -27.11283 -24.92284 -23.24442 -22.90906 -21.72919 -20.43463 -20.25966 -19.82335 -17.36186 -16.64506 -16.36403 -16.03276 -15.30380 -14.97348 -14.47362 -14.35505 -14.10123 -13.91299 -13.46870 -13.31763 -12.99922 -12.42920 -12.24770 -12.12016 -12.05933 -11.91964 -11.75297 -11.49695 -11.35522 -11.07147 -10.98097 -10.78467 -10.64476 -10.60688 -10.56275 -10.35246 -10.21584 -10.10305 -9.70890 -9.47711 -9.14272 -8.39038 -6.03510 -4.06453 2.39157 2.93970 3.30029 3.37400 3.41856 4.31355 4.37785 4.42867 4.46638 4.71975 4.75492 4.92463 5.02874 5.12012 5.15606 5.23884 5.25085 5.31863 5.32505 5.38058 5.56439 5.60030 5.62711 5.66312 5.68663 5.76645 5.81648 5.89100 5.91285 5.96882 6.00469 6.04780 6.12665 6.22739 6.55009 6.55286 6.88023 7.00148 7.60870 7.71802 7.94881 7.99581 8.36305 9.00103 9.57858 11.08026 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.002734 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.934827 B =10238.008939 C =10750.772104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.071 0.929 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.079 4.079 8 H 0.106 0.894 9 C 0.459 3.541 10 O -0.514 6.514 11 O -0.357 6.357 12 C 0.067 3.933 13 C -0.108 4.108 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.104 4.104 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 -24.402 -7.573 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.090 0.910 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.098 4.098 8 H 0.124 0.876 9 C 0.301 3.699 10 O -0.402 6.402 11 O -0.274 6.274 12 C -0.006 4.006 13 C -0.146 4.146 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.142 4.142 24 C -0.150 4.150 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.046 -24.059 -7.880 26.279 hybrid contribution -0.008 0.817 0.708 1.081 sum -7.053 -23.242 -7.172 25.326 Atomic orbital electron populations 1.21831 0.95950 1.01428 1.02039 1.21564 0.95885 0.96325 1.01902 1.21263 0.95514 0.95885 0.98388 0.91020 1.21637 1.01049 0.94808 0.97524 1.21537 0.92162 0.97781 1.03496 1.21087 0.98074 0.89295 1.01340 0.87620 1.23692 0.76860 0.88851 0.80453 1.90645 1.38149 1.75932 1.35479 1.86496 1.72029 1.26089 1.42756 1.23483 0.98817 0.76888 1.01377 1.21753 1.01475 0.97793 0.93569 1.19061 0.96523 0.88089 0.97724 1.21213 1.35237 0.96671 1.02714 0.92380 1.25041 0.95134 0.97687 0.96696 1.69980 1.38279 1.12058 1.33066 0.86488 0.78197 0.79746 0.83295 1.19666 1.20974 1.20967 1.21424 1.01674 0.95235 0.95821 1.21589 0.95177 0.96072 1.02171 0.92357 0.92804 0.93005 0.92112 0.91992 0.91181 0.91590 0.90191 0.91400 0.91635 0.91631 0.92183 0.92183 0.96251 0.96249 0.92952 0.91015 0.91002 0.91722 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.67 37.16 0.36 -0.55 16 2 C -0.12 -0.72 5.40 -26.73 -0.14 -0.87 16 3 C -0.09 -0.65 2.19 -90.62 -0.20 -0.84 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.11 -0.83 4.96 -26.73 -0.13 -0.97 16 6 C -0.11 -1.07 5.14 -26.73 -0.14 -1.21 16 7 C -0.08 -0.86 2.63 -91.77 -0.24 -1.10 16 8 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 9 C 0.46 7.09 7.26 36.01 0.26 7.35 16 10 O -0.51 -9.38 15.73 -18.75 -0.29 -9.68 16 11 O -0.36 -6.09 10.12 -39.26 -0.40 -6.48 16 12 C 0.07 1.28 5.47 37.16 0.20 1.48 16 13 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -1.02 4.49 -26.76 -0.12 -1.14 16 24 C -0.11 -0.83 5.20 -26.76 -0.14 -0.97 16 25 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.94 -0.42 -0.15 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -31.12 351.22 -8.92 -40.04 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -8.25 Total: -5.17 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.99 Total: -14.35 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.69 Total: -16.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.12 -8.92 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782401419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.251 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds