Wall clock time and date at job start Mon Mar 30 2020 00:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.09002 * 109.47070 * 305.00072 * 3 2 1 5 5 C 1.52997 * 109.46817 * 64.99892 * 3 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 3 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 C 1.50699 * 109.47155 * 179.97438 * 7 6 5 10 10 O 1.20827 * 120.00172 * 239.99798 * 9 7 6 11 11 O 1.34231 * 120.00242 * 59.99333 * 9 7 6 12 12 C 1.45195 * 117.00446 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47423 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46841 * 180.02562 * 13 12 11 15 15 C 1.50709 * 109.46870 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99676 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47329 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46786 * 120.00449 * 19 17 15 22 22 H 1.48504 * 109.46605 * 239.99696 * 19 17 15 23 23 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 24 24 C 1.53000 * 109.47233 * 184.99697 * 3 2 1 25 25 H 1.08997 * 109.47151 * 300.00410 * 1 2 3 26 26 H 1.09006 * 109.46918 * 59.99351 * 1 2 3 27 27 H 1.08988 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47149 * 240.00076 * 2 1 3 29 29 H 1.08997 * 109.47163 * 120.00146 * 2 1 3 30 30 H 1.08996 * 109.47853 * 300.00202 * 5 3 2 31 31 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 32 32 H 1.09000 * 109.47486 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 6 5 3 34 34 H 1.09000 * 109.47431 * 300.00782 * 12 11 9 35 35 H 1.08999 * 109.46793 * 60.00535 * 12 11 9 36 36 H 1.09004 * 109.46961 * 300.00137 * 13 12 11 37 37 H 1.08999 * 109.46966 * 60.00314 * 13 12 11 38 38 H 1.08995 * 109.47358 * 299.99412 * 14 13 12 39 39 H 1.08999 * 109.47313 * 60.00246 * 14 13 12 40 40 H 0.96998 * 119.99732 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 7 6 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 7 6 43 43 H 1.08992 * 109.47399 * 300.00166 * 24 3 2 44 44 H 1.09004 * 109.46724 * 60.00652 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5688 1.3077 7 6 3.6708 3.5700 1.1822 8 1 4.1050 3.0307 2.0241 9 6 4.1736 4.9906 1.1820 10 8 4.7923 5.4124 0.2337 11 8 3.9342 5.7876 2.2353 12 6 4.4488 7.1435 2.1665 13 6 4.0808 7.8944 3.4478 14 6 4.6226 9.3234 3.3748 15 6 4.2606 10.0628 4.6372 16 1 3.6999 9.5635 5.4136 17 6 4.6453 11.3766 4.8010 18 7 5.3277 11.9847 3.8553 19 14 4.1973 12.2928 6.3660 20 1 3.4342 11.3914 7.2662 21 1 5.4373 12.7406 7.0496 22 1 3.3649 13.4749 6.0264 23 6 4.0755 2.8860 -0.1251 24 6 3.5649 1.4443 -0.1256 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 0.5490 2.1253 1.3970 31 1 2.0699 1.5874 2.1492 32 1 1.8579 4.0559 2.2393 33 1 1.7116 4.1081 0.4659 34 1 5.5333 7.1157 2.0607 35 1 4.0131 7.6543 1.3078 36 1 2.9963 7.9223 3.5538 37 1 4.5168 7.3835 4.3062 38 1 5.7070 9.2959 3.2687 39 1 4.1862 9.8341 2.5164 40 1 5.5987 12.9089 3.9707 41 1 5.1618 2.8873 -0.2147 42 1 3.6412 3.4254 -0.9669 43 1 3.9995 0.9052 0.7161 44 1 3.8532 0.9570 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782401419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:35 Heat of formation + Delta-G solvation = -160.089234 kcal Electronic energy + Delta-G solvation = -20283.047697 eV Core-core repulsion = 17197.516460 eV Total energy + Delta-G solvation = -3085.531237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78316 -39.61329 -37.82155 -35.95578 -34.94507 -33.67807 -31.79636 -30.42005 -28.95594 -25.99974 -24.82596 -23.61929 -22.67506 -22.18803 -21.11709 -20.67107 -18.77955 -18.42483 -17.69021 -17.48829 -16.50422 -16.24292 -15.58023 -15.52492 -15.00950 -14.83554 -14.44731 -14.29604 -14.13355 -13.77734 -13.75866 -13.63790 -13.10100 -12.86000 -12.82728 -12.51783 -12.50330 -12.33426 -12.18093 -12.10345 -12.02158 -11.75980 -11.64497 -11.45553 -11.42895 -11.31430 -11.24441 -10.93592 -10.84910 -10.59504 -8.23164 -6.34879 1.13110 1.40876 1.41262 1.54835 1.66168 2.40603 3.10738 3.47126 3.67533 3.70282 3.96171 3.98592 4.04256 4.10617 4.16875 4.31869 4.38645 4.43093 4.54757 4.55339 4.63032 4.74357 4.77013 4.79766 4.86767 4.93852 5.05628 5.06662 5.14161 5.19495 5.21745 5.24213 5.29441 5.35143 5.40383 5.42885 5.52253 5.57666 5.61369 5.65619 5.78484 6.17426 6.68162 6.81343 7.34808 8.89398 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040282 B = 0.002734 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.934827 B =10238.008939 C =10750.772104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.090 4.090 4 H 0.064 0.936 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.072 4.072 8 H 0.128 0.872 9 C 0.455 3.545 10 O -0.545 6.545 11 O -0.356 6.356 12 C 0.076 3.924 13 C -0.092 4.092 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.102 4.102 24 C -0.106 4.106 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.265 0.735 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -26.208 -6.324 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.091 4.091 8 H 0.145 0.855 9 C 0.300 3.700 10 O -0.435 6.435 11 O -0.272 6.272 12 C 0.003 3.997 13 C -0.130 4.130 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.139 4.139 24 C -0.143 4.143 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.126 -25.893 -6.631 27.937 hybrid contribution 0.341 1.355 0.248 1.420 sum -7.785 -24.538 -6.383 26.522 Atomic orbital electron populations 1.21841 0.95861 1.01758 1.01904 1.21528 0.95923 0.95442 1.02401 1.21243 0.95168 0.96565 0.97915 0.91778 1.21621 1.01565 0.93138 0.98128 1.21546 0.90900 0.99416 1.02899 1.21280 0.99033 0.85992 1.02760 0.85467 1.24736 0.75896 0.90053 0.79300 1.90634 1.39694 1.76734 1.36475 1.86494 1.72007 1.25055 1.43673 1.23110 0.98456 0.78171 0.99978 1.21447 1.01571 0.95126 0.94857 1.18946 0.95024 0.90959 0.96284 1.21646 1.35351 0.97385 1.03557 0.91614 1.26041 0.94858 0.98777 1.00402 1.70112 1.39378 1.12601 1.35376 0.85313 0.78126 0.78299 0.78789 1.18294 1.20374 1.20364 1.21423 1.01141 0.96718 0.94640 1.21564 0.95395 0.94146 1.03225 0.92310 0.93153 0.92477 0.91755 0.91363 0.90365 0.90476 0.90577 0.92319 0.92165 0.92249 0.91436 0.91411 0.98574 0.98594 0.92667 0.91859 0.92475 0.90487 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.12 -1.10 5.40 30.59 0.17 -0.94 16 3 C -0.09 -1.07 2.19 -10.79 -0.02 -1.09 16 4 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 5 C -0.11 -1.33 4.96 30.59 0.15 -1.18 16 6 C -0.11 -1.94 5.14 30.60 0.16 -1.78 16 7 C -0.07 -1.47 2.63 -11.54 -0.03 -1.50 16 8 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 9 C 0.46 13.96 7.26 71.24 0.52 14.48 16 10 O -0.55 -20.24 15.73 21.96 0.35 -19.89 16 11 O -0.36 -11.96 10.12 -51.42 -0.52 -12.48 16 12 C 0.08 2.94 5.47 71.98 0.39 3.33 16 13 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 14 C 0.03 1.34 4.97 29.85 0.15 1.49 16 15 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 19 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.10 -1.90 4.49 30.58 0.14 -1.76 16 24 C -0.11 -1.33 5.20 30.58 0.16 -1.17 16 25 H 0.06 0.55 6.56 -2.39 -0.02 0.54 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.88 6.57 -2.39 -0.02 0.86 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.41 8.11 -2.39 -0.02 1.39 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.97 351.22 6.40 -60.57 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.93 Total: 7.64 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.34 Total: -25.02 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.18 Total: -32.38 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.97 6.40 -60.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782401419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.517 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds