Wall clock time and date at job start Mon Mar 30 2020 01:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47117 * 274.99832 * 15 14 12 17 17 C 1.52998 * 109.45792 * 164.04899 * 16 15 14 18 18 C 1.52983 * 109.51104 * 315.99147 * 17 16 15 19 19 C 1.53006 * 109.47049 * 112.93534 * 18 17 16 20 20 C 1.53006 * 109.43004 * 284.04117 * 19 18 17 21 21 C 1.52987 * 109.48206 * 75.96347 * 20 19 18 22 22 C 1.52994 * 109.50462 * 247.06162 * 21 20 19 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 29 29 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 30 30 H 1.08999 * 109.47312 * 35.00715 * 15 14 12 31 31 H 1.08993 * 109.47787 * 284.04573 * 16 15 14 32 32 H 1.09000 * 109.47610 * 44.05721 * 16 15 14 33 33 H 1.09000 * 109.46463 * 195.97818 * 17 16 15 34 34 H 1.09000 * 109.45619 * 76.00185 * 17 16 15 35 35 H 1.09003 * 109.46761 * 352.93249 * 18 17 16 36 36 H 1.08997 * 109.47015 * 232.93372 * 18 17 16 37 37 H 1.08996 * 109.47524 * 164.05299 * 19 18 17 38 38 H 1.09001 * 109.48568 * 44.03341 * 19 18 17 39 39 H 1.09000 * 109.47243 * 315.95970 * 20 19 18 40 40 H 1.09003 * 109.46357 * 195.96440 * 20 19 18 41 41 H 1.09000 * 109.46457 * 127.05639 * 21 20 19 42 42 H 1.08999 * 109.46893 * 7.07432 * 21 20 19 43 43 H 1.09004 * 109.47443 * 284.01900 * 22 21 20 44 44 H 1.09002 * 109.47775 * 164.01041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.4027 -6.0980 0.0028 14 7 1.5129 -7.2652 0.0023 15 6 2.2455 -8.5339 0.0022 16 6 2.6093 -8.9126 -1.4349 17 6 3.6916 -9.9939 -1.4186 18 6 4.7588 -9.6331 -0.3836 19 6 4.7200 -10.6453 0.7631 20 6 3.5180 -10.3498 1.6625 21 6 2.2379 -10.8336 0.9785 22 6 1.3682 -9.6294 0.6118 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.5429 -4.9308 0.0020 29 1 0.5429 -7.2652 0.0016 30 1 3.1561 -8.4277 0.5917 31 1 1.7244 -9.2919 -1.9459 32 1 2.9826 -8.0329 -1.9592 33 1 4.1507 -10.0632 -2.4047 34 1 3.2430 -10.9527 -1.1587 35 1 4.5634 -8.6342 0.0066 36 1 5.7421 -9.6537 -0.8533 37 1 5.6377 -10.5691 1.3463 38 1 4.6306 -11.6525 0.3562 39 1 3.4519 -9.2763 1.8396 40 1 3.6399 -10.8681 2.6136 41 1 1.6878 -11.4857 1.6569 42 1 2.4953 -11.3846 0.0740 43 1 0.8802 -9.2472 1.5084 44 1 0.6121 -9.9340 -0.1117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784175554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:35 Heat of formation + Delta-G solvation = -52.660257 kcal Electronic energy + Delta-G solvation = -21009.829341 eV Core-core repulsion = 17961.249325 eV Total energy + Delta-G solvation = -3048.580016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26714 -38.65410 -35.01994 -34.35428 -32.98018 -32.81455 -31.45404 -29.31860 -26.17401 -26.04139 -24.41236 -22.08551 -21.19269 -20.92411 -20.41409 -19.48245 -17.89867 -16.78517 -16.26275 -15.46269 -14.92167 -14.75223 -14.46543 -14.31756 -14.24505 -13.89148 -13.47719 -13.42687 -13.30101 -12.75563 -12.27475 -12.04819 -11.81425 -11.52138 -11.31102 -11.24692 -11.15850 -11.01103 -10.90096 -10.61006 -10.57381 -10.30922 -10.14799 -9.87409 -9.82617 -9.51252 -9.22928 -8.86061 -8.45408 -8.18509 -6.07193 -4.09663 3.12898 3.31150 3.37216 3.42057 3.66735 4.39460 4.43146 4.64352 4.66000 4.83724 4.88872 4.98133 5.04533 5.09144 5.10736 5.24664 5.29923 5.51950 5.56197 5.69211 5.73913 5.79022 5.84233 5.88663 5.97539 6.01182 6.10449 6.16533 6.22207 6.34298 6.39180 6.43871 6.51041 6.77256 6.82901 7.06496 7.33185 7.60633 7.66442 7.92357 8.29188 8.51504 8.95761 9.08061 9.54974 11.04517 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039651 B = 0.003169 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.988133 B = 8834.763206 C = 9069.970129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.740 5.740 12 C 0.698 3.302 13 O -0.598 6.598 14 N -0.751 5.751 15 C 0.142 3.858 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.127 4.127 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.392 0.608 29 H 0.391 0.609 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -23.489 0.417 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.394 5.394 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.407 5.407 15 C 0.038 3.962 16 C -0.169 4.169 17 C -0.159 4.159 18 C -0.174 4.174 19 C -0.155 4.155 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.165 4.165 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.225 0.775 29 H 0.224 0.776 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.148 -23.319 0.428 23.535 hybrid contribution -0.641 0.995 -0.100 1.188 sum 2.506 -22.324 0.328 22.467 Atomic orbital electron populations 1.69955 1.06092 1.26824 1.50529 1.24997 0.94889 0.99397 0.95038 0.86513 0.79858 0.83007 0.78188 1.20572 1.21198 1.19701 1.21064 0.93276 0.90389 1.51157 0.92224 1.19322 0.94265 0.91120 0.97757 1.21563 0.95599 0.80506 1.00552 1.45545 1.09787 1.05396 1.78646 1.16099 0.85721 0.80516 0.77909 1.90869 1.11708 1.86667 1.58478 1.45295 1.09259 1.04736 1.81365 1.21449 0.96602 0.81426 0.96743 1.22038 0.98538 0.99271 0.97056 1.21781 0.96246 0.98783 0.99059 1.21898 0.98675 1.00684 0.96148 1.21698 0.97946 0.98918 0.96933 1.21874 0.94508 1.02281 0.98394 1.21792 0.96022 0.97220 1.00954 1.21909 0.98163 0.95502 1.00965 0.92885 0.96024 0.96003 0.92881 0.92862 0.77494 0.77617 0.87040 0.92269 0.91379 0.92379 0.91141 0.89644 0.92392 0.92285 0.92066 0.90663 0.92287 0.92043 0.90649 0.91405 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.38 5.56 -65.22 -0.36 -13.74 16 12 C 0.70 12.38 8.46 -86.91 -0.74 11.65 16 13 O -0.60 -12.80 16.01 5.29 0.08 -12.72 16 14 N -0.75 -9.77 5.08 -58.66 -0.30 -10.07 16 15 C 0.14 1.63 1.86 -67.92 -0.13 1.50 16 16 C -0.13 -1.45 5.30 -26.73 -0.14 -1.59 16 17 C -0.12 -1.15 5.48 -26.74 -0.15 -1.30 16 18 C -0.14 -1.42 5.47 -26.74 -0.15 -1.57 16 19 C -0.12 -1.01 5.59 -26.73 -0.15 -1.16 16 20 C -0.13 -1.16 5.47 -26.73 -0.15 -1.31 16 21 C -0.12 -0.94 5.48 -26.74 -0.15 -1.08 16 22 C -0.13 -1.09 5.18 -26.73 -0.14 -1.23 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.39 6.12 8.49 -40.82 -0.35 5.77 16 29 H 0.39 4.05 8.62 -40.82 -0.35 3.70 16 30 H 0.11 1.48 2.26 -51.93 -0.12 1.37 16 31 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 32 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 4.69 -51.93 -0.24 0.32 16 35 H 0.09 1.14 5.47 -51.93 -0.28 0.85 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.46 7.47 -51.93 -0.39 0.07 16 39 H 0.07 0.80 5.47 -51.93 -0.28 0.52 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.54 4.69 -51.93 -0.24 0.30 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -31.62 332.70 -9.56 -41.18 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.26 Total: 5.63 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.45 Total: -6.21 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.08 Total: -49.43 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.62 -9.56 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784175554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.481 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds