Wall clock time and date at job start Mon Mar 30 2020 01:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47117 * 274.99832 * 15 14 12 17 17 C 1.52998 * 109.45792 * 164.04899 * 16 15 14 18 18 C 1.52983 * 109.51104 * 315.99147 * 17 16 15 19 19 C 1.53006 * 109.47049 * 112.93534 * 18 17 16 20 20 C 1.53006 * 109.43004 * 284.04117 * 19 18 17 21 21 C 1.52987 * 109.48206 * 75.96347 * 20 19 18 22 22 C 1.52994 * 109.50462 * 247.06162 * 21 20 19 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 29 29 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 30 30 H 1.08999 * 109.47312 * 35.00715 * 15 14 12 31 31 H 1.08993 * 109.47787 * 284.04573 * 16 15 14 32 32 H 1.09000 * 109.47610 * 44.05721 * 16 15 14 33 33 H 1.09000 * 109.46463 * 195.97818 * 17 16 15 34 34 H 1.09000 * 109.45619 * 76.00185 * 17 16 15 35 35 H 1.09003 * 109.46761 * 352.93249 * 18 17 16 36 36 H 1.08997 * 109.47015 * 232.93372 * 18 17 16 37 37 H 1.08996 * 109.47524 * 164.05299 * 19 18 17 38 38 H 1.09001 * 109.48568 * 44.03341 * 19 18 17 39 39 H 1.09000 * 109.47243 * 315.95970 * 20 19 18 40 40 H 1.09003 * 109.46357 * 195.96440 * 20 19 18 41 41 H 1.09000 * 109.46457 * 127.05639 * 21 20 19 42 42 H 1.08999 * 109.46893 * 7.07432 * 21 20 19 43 43 H 1.09004 * 109.47443 * 284.01900 * 22 21 20 44 44 H 1.09002 * 109.47775 * 164.01041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.4027 -6.0980 0.0028 14 7 1.5129 -7.2652 0.0023 15 6 2.2455 -8.5339 0.0022 16 6 2.6093 -8.9126 -1.4349 17 6 3.6916 -9.9939 -1.4186 18 6 4.7588 -9.6331 -0.3836 19 6 4.7200 -10.6453 0.7631 20 6 3.5180 -10.3498 1.6625 21 6 2.2379 -10.8336 0.9785 22 6 1.3682 -9.6294 0.6118 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.5429 -4.9308 0.0020 29 1 0.5429 -7.2652 0.0016 30 1 3.1561 -8.4277 0.5917 31 1 1.7244 -9.2919 -1.9459 32 1 2.9826 -8.0329 -1.9592 33 1 4.1507 -10.0632 -2.4047 34 1 3.2430 -10.9527 -1.1587 35 1 4.5634 -8.6342 0.0066 36 1 5.7421 -9.6537 -0.8533 37 1 5.6377 -10.5691 1.3463 38 1 4.6306 -11.6525 0.3562 39 1 3.4519 -9.2763 1.8396 40 1 3.6399 -10.8681 2.6136 41 1 1.6878 -11.4857 1.6569 42 1 2.4953 -11.3846 0.0740 43 1 0.8802 -9.2472 1.5084 44 1 0.6121 -9.9340 -0.1117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784175554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:34 Heat of formation + Delta-G solvation = -73.182338 kcal Electronic energy + Delta-G solvation = -21010.719245 eV Core-core repulsion = 17961.249325 eV Total energy + Delta-G solvation = -3049.469920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39748 -39.79535 -36.63138 -35.61996 -34.79512 -33.70997 -32.60676 -31.07853 -27.33106 -26.85353 -26.13372 -23.05622 -22.81513 -22.10146 -21.53161 -20.35627 -19.30676 -18.43032 -17.75876 -16.64077 -16.50197 -16.23464 -15.96878 -15.19749 -15.02822 -14.97925 -14.90995 -14.84092 -14.26799 -14.14356 -13.77449 -13.21372 -12.95661 -12.87791 -12.59329 -12.51049 -12.30942 -12.19565 -12.13400 -11.96864 -11.69943 -11.64792 -11.50596 -11.36100 -11.09735 -10.97208 -10.60824 -10.57497 -10.20593 -9.63433 -8.24252 -6.34641 1.41657 1.42388 1.53894 1.82839 2.21919 2.41483 3.10451 3.39690 3.68297 3.92493 3.99716 4.12637 4.21047 4.29067 4.36083 4.37532 4.42694 4.48337 4.51891 4.76848 4.82822 4.86091 4.94337 4.99515 5.04866 5.10808 5.15066 5.24308 5.26158 5.32243 5.34332 5.38418 5.48445 5.52821 5.59140 5.65241 5.67531 5.70251 5.79613 6.11793 6.17599 6.78458 7.18765 7.34788 7.66250 8.87741 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039651 B = 0.003169 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.988133 B = 8834.763206 C = 9069.970129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.736 5.736 12 C 0.695 3.305 13 O -0.637 6.637 14 N -0.732 5.732 15 C 0.135 3.865 16 C -0.126 4.126 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.266 0.734 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.406 0.594 29 H 0.407 0.593 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -25.149 0.430 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.391 5.391 12 C 0.395 3.605 13 O -0.519 6.519 14 N -0.387 5.387 15 C 0.031 3.969 16 C -0.165 4.165 17 C -0.154 4.154 18 C -0.174 4.174 19 C -0.151 4.151 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.158 4.158 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.241 0.759 29 H 0.243 0.757 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.625 -25.028 0.441 25.169 hybrid contribution -0.496 1.468 -0.101 1.553 sum 2.129 -23.560 0.340 23.659 Atomic orbital electron populations 1.70055 1.07533 1.28013 1.51009 1.25874 0.95812 1.03093 0.94375 0.85437 0.78630 0.78394 0.78544 1.19736 1.20421 1.19074 1.21471 0.93589 0.91947 1.51573 0.92364 1.19118 0.94200 0.91660 0.96292 1.21035 0.94595 0.81280 0.99371 1.45239 1.10297 1.04510 1.79022 1.16235 0.85283 0.81316 0.77651 1.90846 1.13637 1.87292 1.60162 1.45184 1.10107 1.03836 1.79583 1.21674 0.96717 0.81334 0.97131 1.21996 0.99705 0.98405 0.96404 1.21781 0.95493 0.99161 0.98923 1.21862 0.98930 0.99512 0.97115 1.21686 0.98000 0.99188 0.96211 1.21857 0.95293 1.00836 0.99119 1.21793 0.95254 0.96859 1.01632 1.21879 0.98061 0.94608 1.01235 0.92519 0.97371 0.97310 0.94099 0.94026 0.75920 0.75723 0.88854 0.90352 0.95064 0.92104 0.88693 0.93048 0.92678 0.92514 0.90047 0.93172 0.91276 0.90273 0.89665 0.91298 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.19 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.29 5.61 86.38 0.48 7.78 16 11 N -0.74 -26.97 5.56 -478.52 -2.66 -29.63 16 12 C 0.70 25.09 8.46 179.05 1.51 26.60 16 13 O -0.64 -28.34 16.01 -4.00 -0.06 -28.41 16 14 N -0.73 -18.65 5.08 -457.76 -2.33 -20.98 16 15 C 0.14 3.00 1.86 45.00 0.08 3.08 16 16 C -0.13 -2.71 5.30 30.60 0.16 -2.55 16 17 C -0.12 -2.04 5.48 30.59 0.17 -1.88 16 18 C -0.14 -2.83 5.47 30.59 0.17 -2.66 16 19 C -0.11 -1.80 5.59 30.60 0.17 -1.63 16 20 C -0.13 -2.12 5.47 30.59 0.17 -1.96 16 21 C -0.12 -1.44 5.48 30.59 0.17 -1.27 16 22 C -0.12 -1.74 5.18 30.60 0.16 -1.58 16 23 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.41 12.61 8.49 -92.71 -0.79 11.82 16 29 H 0.41 7.80 8.62 -92.71 -0.80 7.00 16 30 H 0.09 2.54 2.26 -2.39 -0.01 2.53 16 31 H 0.08 1.36 7.82 -2.39 -0.02 1.34 16 32 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.21 4.69 -2.39 -0.01 1.20 16 35 H 0.05 1.44 5.47 -2.39 -0.01 1.43 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.98 7.47 -2.39 -0.02 0.96 16 39 H 0.05 1.07 5.47 -2.39 -0.01 1.06 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.88 4.69 -2.39 -0.01 0.87 16 43 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.08 0.96 7.82 -2.39 -0.02 0.94 16 Total: -1.00 -69.32 332.70 0.77 -68.55 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.58 Total: 23.56 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 4.09 Total: -4.70 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.70 Total: -105.15 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.32 0.77 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784175554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.634 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds