Wall clock time and date at job start Mon Mar 30 2020 01:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47040 * 300.00256 * 3 2 1 6 6 H 1.48500 * 109.47050 * 60.00190 * 3 2 1 7 7 C 1.37874 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99606 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00592 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00145 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99584 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99812 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.52984 * 109.46681 * 295.03918 * 15 14 13 17 17 C 1.53014 * 109.46275 * 195.97918 * 16 15 14 18 18 C 1.53008 * 109.47064 * 284.04776 * 17 16 15 19 19 C 1.52995 * 109.45920 * 75.93723 * 18 17 16 20 20 C 1.52989 * 109.50569 * 44.01236 * 19 18 17 21 21 C 1.52997 * 109.48402 * 247.06623 * 20 19 18 22 22 C 1.52983 * 109.46061 * 174.99963 * 15 14 13 23 23 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46876 * 59.99932 * 9 7 2 25 25 H 1.09000 * 109.46993 * 300.00295 * 9 7 2 26 26 H 0.97003 * 119.99892 * 359.97438 * 10 9 7 27 27 H 0.97003 * 120.00453 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46928 * 59.99505 * 14 13 11 29 29 H 1.08998 * 109.46647 * 299.99999 * 14 13 11 30 30 H 1.09003 * 109.46477 * 55.01939 * 15 14 13 31 31 H 1.09002 * 109.47190 * 75.98001 * 16 15 14 32 32 H 1.09006 * 109.47488 * 315.97649 * 16 15 14 33 33 H 1.09002 * 109.47344 * 164.04472 * 17 16 15 34 34 H 1.09001 * 109.46856 * 44.04531 * 17 16 15 35 35 H 1.09003 * 109.47329 * 195.93883 * 18 17 16 36 36 H 1.09002 * 109.47320 * 315.93643 * 18 17 16 37 37 H 1.09001 * 109.46518 * 164.02095 * 19 18 17 38 38 H 1.08996 * 109.46642 * 283.99928 * 19 18 17 39 39 H 1.08998 * 109.46320 * 7.07013 * 20 19 18 40 40 H 1.08993 * 109.46434 * 127.05508 * 20 19 18 41 41 H 1.09004 * 109.47247 * 195.95270 * 21 20 19 42 42 H 1.09005 * 109.47840 * 315.95919 * 21 20 19 43 43 H 1.08996 * 109.47395 * 112.94891 * 22 15 14 44 44 H 1.09003 * 109.47689 * 352.94669 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3312 -8.2507 -0.0029 16 6 4.1104 -8.0959 -1.3103 17 6 5.0382 -9.2983 -1.4963 18 6 6.2485 -9.1566 -0.5708 19 6 5.8354 -9.4928 0.8634 20 6 4.9621 -10.7489 0.8624 21 6 3.5386 -10.3810 1.2856 22 6 2.8246 -9.6887 0.1229 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0009 27 1 3.5833 -5.7305 -0.0020 28 1 1.5352 -7.4602 -0.8913 29 1 1.5361 -7.4604 0.8886 30 1 3.9848 -8.0209 0.8387 31 1 4.7030 -7.1817 -1.2741 32 1 3.4119 -8.0433 -2.1455 33 1 5.3757 -9.3402 -2.5319 34 1 4.4996 -10.2140 -1.2524 35 1 7.0340 -9.8404 -0.8926 36 1 6.6192 -8.1324 -0.6117 37 1 6.7263 -9.6703 1.4658 38 1 5.2727 -8.6595 1.2842 39 1 4.9439 -11.1778 -0.1394 40 1 5.3725 -11.4771 1.5619 41 1 2.9954 -11.2858 1.5587 42 1 3.5765 -9.7075 2.1419 43 1 3.0291 -10.2281 -0.8019 44 1 1.7506 -9.6807 0.3090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:29 Heat of formation + Delta-G solvation = -54.083970 kcal Electronic energy + Delta-G solvation = -20863.847529 eV Core-core repulsion = 17815.205776 eV Total energy + Delta-G solvation = -3048.641753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00195 -38.83528 -35.17340 -33.99538 -33.15571 -32.58779 -32.00024 -28.23853 -26.77787 -26.13896 -24.16352 -22.43711 -22.08303 -20.32901 -19.98244 -19.57624 -17.94524 -16.47411 -15.89625 -15.64744 -15.25903 -14.81216 -14.56648 -14.36705 -14.22369 -13.75193 -13.60429 -13.37321 -12.95557 -12.70496 -12.61137 -11.98737 -11.93449 -11.70566 -11.49539 -11.23948 -11.10151 -10.97904 -10.91070 -10.88554 -10.82382 -10.47164 -10.27307 -10.18508 -9.89885 -9.33717 -9.31070 -8.71833 -8.59532 -7.68945 -6.12258 -4.18498 3.25994 3.32288 3.35514 3.50561 4.04176 4.34807 4.37107 4.54448 4.57641 4.79793 4.89760 4.90332 4.94402 5.01832 5.05048 5.22966 5.23805 5.35537 5.50088 5.57768 5.64803 5.67855 5.68998 5.79337 5.83346 5.85285 5.92203 5.97683 6.01138 6.08122 6.13597 6.20445 6.32196 6.40639 6.97820 7.19109 7.57680 7.61157 7.62092 7.96487 8.09846 8.81363 9.01459 9.39478 9.54006 10.98113 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033045 B = 0.003238 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.138776 B = 8645.662138 C = 9092.889844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.691 3.309 12 O -0.603 6.603 13 N -0.757 5.757 14 C 0.146 3.854 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.140 4.140 18 C -0.118 4.118 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.120 4.120 23 H 0.265 0.735 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.385 0.615 27 H 0.389 0.611 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 -21.472 -0.079 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.482 6.482 13 N -0.414 5.414 14 C 0.021 3.979 15 C -0.124 4.124 16 C -0.151 4.151 17 C -0.177 4.177 18 C -0.156 4.156 19 C -0.167 4.167 20 C -0.164 4.164 21 C -0.157 4.157 22 C -0.158 4.158 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.217 0.783 27 H 0.222 0.778 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.578 -21.507 -0.080 24.425 hybrid contribution 1.314 1.174 -0.003 1.762 sum 12.892 -20.333 -0.083 24.076 Atomic orbital electron populations 1.69997 1.06080 1.27097 1.49155 1.24952 0.94914 0.99400 0.94838 0.86361 0.79799 0.83019 0.77706 1.19678 1.20830 1.20836 1.21275 0.93287 0.90473 1.52824 0.91932 1.18962 0.87818 0.81134 0.97549 1.45706 1.10672 1.04504 1.77427 1.16179 0.85247 0.81090 0.78380 1.90863 1.14334 1.84304 1.58724 1.45176 1.08636 1.05268 1.82329 1.21269 0.95312 0.79600 1.01735 1.21743 0.96681 0.94827 0.99163 1.21690 0.98176 0.98058 0.97163 1.22089 0.96692 0.99888 0.98982 1.21620 0.97490 1.01384 0.95092 1.21875 0.99437 0.98414 0.96960 1.21819 0.95260 0.97595 1.01754 1.21712 0.95600 1.00292 0.98101 1.21800 1.00116 0.94743 0.99138 0.92554 0.95805 0.95811 0.78269 0.77756 0.92203 0.92216 0.89630 0.91944 0.91802 0.92511 0.89626 0.92563 0.92029 0.92613 0.90798 0.90975 0.92639 0.92222 0.91709 0.90686 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.27 7.32 5.43 -5.20 -0.03 7.29 16 10 N -0.73 -16.13 5.55 -66.42 -0.37 -16.50 16 11 C 0.69 14.78 8.57 -86.92 -0.74 14.04 16 12 O -0.60 -15.64 16.34 5.29 0.09 -15.56 16 13 N -0.76 -11.59 5.36 -65.22 -0.35 -11.94 16 14 C 0.15 1.93 4.74 -4.04 -0.02 1.91 16 15 C -0.11 -0.98 1.78 -90.64 -0.16 -1.14 16 16 C -0.11 -1.00 4.75 -26.73 -0.13 -1.13 16 17 C -0.14 -1.04 5.33 -26.72 -0.14 -1.18 16 18 C -0.12 -0.85 5.71 -26.73 -0.15 -1.00 16 19 C -0.13 -0.93 5.48 -26.74 -0.15 -1.07 16 20 C -0.13 -0.86 5.47 -26.74 -0.15 -1.00 16 21 C -0.12 -0.87 5.59 -26.73 -0.15 -1.02 16 22 C -0.12 -0.98 5.13 -26.74 -0.14 -1.11 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 27 H 0.39 4.83 7.86 -40.82 -0.32 4.51 16 28 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.09 0.78 4.69 -51.93 -0.24 0.54 16 31 H 0.06 0.57 7.31 -51.93 -0.38 0.19 16 32 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.60 2.83 -51.93 -0.15 0.46 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.58 4.69 -51.93 -0.24 0.33 16 39 H 0.07 0.47 5.47 -51.93 -0.28 0.19 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 43 H 0.07 0.56 5.47 -51.93 -0.28 0.28 16 44 H 0.07 0.57 7.59 -51.93 -0.39 0.17 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -32.74 330.71 -9.48 -42.22 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.18 Total: 5.55 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.37 Total: 0.95 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.02 Total: -54.23 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.74 -9.48 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.864 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds