Wall clock time and date at job start Mon Mar 30 2020 01:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47040 * 300.00256 * 3 2 1 6 6 H 1.48500 * 109.47050 * 60.00190 * 3 2 1 7 7 C 1.37874 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99606 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00592 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00145 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99584 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99812 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47108 * 179.97438 * 14 13 11 16 16 C 1.52984 * 109.46681 * 295.03918 * 15 14 13 17 17 C 1.53014 * 109.46275 * 195.97918 * 16 15 14 18 18 C 1.53008 * 109.47064 * 284.04776 * 17 16 15 19 19 C 1.52995 * 109.45920 * 75.93723 * 18 17 16 20 20 C 1.52989 * 109.50569 * 44.01236 * 19 18 17 21 21 C 1.52997 * 109.48402 * 247.06623 * 20 19 18 22 22 C 1.52983 * 109.46061 * 174.99963 * 15 14 13 23 23 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46876 * 59.99932 * 9 7 2 25 25 H 1.09000 * 109.46993 * 300.00295 * 9 7 2 26 26 H 0.97003 * 119.99892 * 359.97438 * 10 9 7 27 27 H 0.97003 * 120.00453 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.46928 * 59.99505 * 14 13 11 29 29 H 1.08998 * 109.46647 * 299.99999 * 14 13 11 30 30 H 1.09003 * 109.46477 * 55.01939 * 15 14 13 31 31 H 1.09002 * 109.47190 * 75.98001 * 16 15 14 32 32 H 1.09006 * 109.47488 * 315.97649 * 16 15 14 33 33 H 1.09002 * 109.47344 * 164.04472 * 17 16 15 34 34 H 1.09001 * 109.46856 * 44.04531 * 17 16 15 35 35 H 1.09003 * 109.47329 * 195.93883 * 18 17 16 36 36 H 1.09002 * 109.47320 * 315.93643 * 18 17 16 37 37 H 1.09001 * 109.46518 * 164.02095 * 19 18 17 38 38 H 1.08996 * 109.46642 * 283.99928 * 19 18 17 39 39 H 1.08998 * 109.46320 * 7.07013 * 20 19 18 40 40 H 1.08993 * 109.46434 * 127.05508 * 20 19 18 41 41 H 1.09004 * 109.47247 * 195.95270 * 21 20 19 42 42 H 1.09005 * 109.47840 * 315.95919 * 21 20 19 43 43 H 1.08996 * 109.47395 * 112.94891 * 22 15 14 44 44 H 1.09003 * 109.47689 * 352.94669 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3312 -8.2507 -0.0029 16 6 4.1104 -8.0959 -1.3103 17 6 5.0382 -9.2983 -1.4963 18 6 6.2485 -9.1566 -0.5708 19 6 5.8354 -9.4928 0.8634 20 6 4.9621 -10.7489 0.8624 21 6 3.5386 -10.3810 1.2856 22 6 2.8246 -9.6887 0.1229 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0009 27 1 3.5833 -5.7305 -0.0020 28 1 1.5352 -7.4602 -0.8913 29 1 1.5361 -7.4604 0.8886 30 1 3.9848 -8.0209 0.8387 31 1 4.7030 -7.1817 -1.2741 32 1 3.4119 -8.0433 -2.1455 33 1 5.3757 -9.3402 -2.5319 34 1 4.4996 -10.2140 -1.2524 35 1 7.0340 -9.8404 -0.8926 36 1 6.6192 -8.1324 -0.6117 37 1 6.7263 -9.6703 1.4658 38 1 5.2727 -8.6595 1.2842 39 1 4.9439 -11.1778 -0.1394 40 1 5.3725 -11.4771 1.5619 41 1 2.9954 -11.2858 1.5587 42 1 3.5765 -9.7075 2.1419 43 1 3.0291 -10.2281 -0.8019 44 1 1.7506 -9.6807 0.3090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:29 Heat of formation + Delta-G solvation = -76.035757 kcal Electronic energy + Delta-G solvation = -20864.799429 eV Core-core repulsion = 17815.205776 eV Total energy + Delta-G solvation = -3049.593654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10347 -40.18122 -36.49416 -35.89805 -34.40352 -33.76644 -33.32581 -29.67711 -28.30533 -26.77881 -25.37493 -24.20468 -22.82976 -21.78594 -21.05519 -20.22104 -19.68194 -18.05860 -17.51447 -16.74855 -16.61966 -16.22154 -16.06611 -15.18444 -15.11819 -14.94475 -14.81058 -14.54011 -14.25511 -14.03290 -13.87163 -13.48329 -13.31560 -12.86776 -12.74509 -12.63257 -12.21454 -12.21021 -11.90862 -11.75864 -11.63078 -11.51107 -11.44135 -11.22940 -11.13652 -10.81244 -10.78627 -10.57182 -10.23924 -9.55778 -8.27956 -6.44449 1.43856 1.45597 1.58854 1.93979 2.26354 2.40454 3.07016 3.56893 3.71947 3.76279 3.89376 4.17374 4.21946 4.28565 4.33563 4.40431 4.41669 4.56321 4.75506 4.78223 4.91240 5.02030 5.05289 5.07837 5.10437 5.12065 5.18238 5.24882 5.27501 5.27982 5.42193 5.43217 5.49858 5.50750 5.54918 5.57319 5.67564 5.73386 5.75165 5.85976 6.28869 6.67758 7.25060 7.33504 7.74421 8.84784 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033045 B = 0.003238 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.138776 B = 8645.662138 C = 9092.889844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.688 3.312 12 O -0.652 6.652 13 N -0.730 5.730 14 C 0.144 3.856 15 C -0.092 4.092 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.119 4.119 23 H 0.269 0.731 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.404 0.596 27 H 0.408 0.592 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 -21.916 -0.083 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.388 3.612 12 O -0.535 6.535 13 N -0.387 5.387 14 C 0.019 3.981 15 C -0.110 4.110 16 C -0.151 4.151 17 C -0.172 4.172 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.157 4.157 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.239 0.761 27 H 0.245 0.755 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.505 -22.007 -0.083 26.357 hybrid contribution 0.395 1.214 -0.002 1.276 sum 14.900 -20.793 -0.086 25.581 Atomic orbital electron populations 1.70158 1.08304 1.28508 1.50046 1.26088 0.95801 1.03932 0.93879 0.85073 0.79044 0.77164 0.77675 1.17606 1.20433 1.20432 1.21634 0.94316 0.90440 1.52763 0.89801 1.18402 0.88140 0.83437 0.93863 1.45295 1.10830 1.03854 1.77772 1.16380 0.85171 0.81692 0.77957 1.90829 1.16890 1.85031 1.60770 1.44956 1.08843 1.04747 1.80140 1.21471 0.97065 0.78909 1.00609 1.21681 0.94955 0.94418 0.99938 1.21688 0.98167 0.98968 0.96247 1.22054 0.96520 0.99229 0.99379 1.21611 0.97441 1.01457 0.94955 1.21871 0.99592 0.98292 0.96959 1.21802 0.94608 0.97546 1.02212 1.21690 0.96072 1.00342 0.97361 1.21803 0.99782 0.93917 1.00153 0.92239 0.99771 0.99764 0.76056 0.75527 0.93432 0.93367 0.88817 0.91960 0.92837 0.92150 0.89015 0.91815 0.92306 0.92226 0.91535 0.90462 0.92021 0.91507 0.92279 0.89674 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.71 9.28 25.60 0.24 -30.47 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.17 16 9 C 0.28 16.24 5.43 85.63 0.46 16.70 16 10 N -0.72 -32.28 5.55 -482.32 -2.68 -34.96 16 11 C 0.69 29.95 8.57 179.05 1.53 31.48 16 12 O -0.65 -35.21 16.34 -3.97 -0.06 -35.27 16 13 N -0.73 -21.98 5.36 -478.53 -2.56 -24.55 16 14 C 0.14 3.78 4.74 86.38 0.41 4.19 16 15 C -0.09 -1.58 1.78 -10.81 -0.02 -1.60 16 16 C -0.11 -1.82 4.75 30.59 0.15 -1.67 16 17 C -0.14 -1.70 5.33 30.60 0.16 -1.54 16 18 C -0.12 -1.39 5.71 30.60 0.17 -1.21 16 19 C -0.13 -1.55 5.48 30.59 0.17 -1.38 16 20 C -0.12 -1.37 5.47 30.59 0.17 -1.20 16 21 C -0.12 -1.49 5.59 30.60 0.17 -1.32 16 22 C -0.12 -1.75 5.13 30.59 0.16 -1.60 16 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.40 14.81 8.34 -92.71 -0.77 14.04 16 27 H 0.41 9.43 7.86 -92.71 -0.73 8.70 16 28 H 0.05 1.39 8.06 -2.38 -0.02 1.37 16 29 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 30 H 0.09 1.53 4.69 -2.39 -0.01 1.52 16 31 H 0.06 1.00 7.31 -2.39 -0.02 0.98 16 32 H 0.05 0.99 7.98 -2.38 -0.02 0.97 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.06 2.83 -2.39 -0.01 1.05 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.74 7.82 -2.39 -0.02 0.72 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.89 4.69 -2.39 -0.01 0.88 16 39 H 0.08 0.79 5.47 -2.39 -0.01 0.78 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 42 H 0.06 0.83 7.47 -2.38 -0.02 0.81 16 43 H 0.08 1.11 5.47 -2.39 -0.01 1.09 16 44 H 0.06 0.96 7.59 -2.39 -0.02 0.95 16 Total: -1.00 -72.86 330.71 0.74 -72.12 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.49 Total: 23.68 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 4.23 Total: 10.97 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.96 Total: -116.27 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.06 Total: -35.27 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.86 0.74 -72.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.915 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds