Wall clock time and date at job start Mon Mar 30 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.08993 * 109.47223 * 55.00451 * 3 2 1 5 5 C 1.52995 * 109.47074 * 294.99500 * 3 2 1 6 6 C 1.53002 * 109.47074 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46882 * 60.00715 * 6 5 3 8 8 C 1.53000 * 109.47002 * 299.99420 * 7 6 5 9 9 C 1.53002 * 109.46829 * 60.00547 * 8 7 6 10 10 H 1.09003 * 109.47318 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47461 * 59.99692 * 9 8 7 12 12 O 1.20825 * 120.00224 * 240.00088 * 11 9 8 13 13 O 1.34232 * 119.99727 * 60.00164 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46965 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46857 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99565 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00144 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47376 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47084 * 120.00373 * 21 19 17 24 24 H 1.48497 * 109.47286 * 240.00177 * 21 19 17 25 25 H 1.09000 * 109.46976 * 60.00216 * 1 2 3 26 26 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47276 * 299.99719 * 1 2 3 28 28 H 1.09002 * 109.47281 * 239.99699 * 2 1 3 29 29 H 1.09000 * 109.46976 * 119.99783 * 2 1 3 30 30 H 1.09008 * 109.46766 * 60.00509 * 5 3 2 31 31 H 1.09003 * 109.47880 * 300.00574 * 5 3 2 32 32 H 1.08994 * 109.47409 * 300.00188 * 6 5 3 33 33 H 1.09003 * 109.47318 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46780 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.47529 * 59.99546 * 7 6 5 36 36 H 1.08994 * 109.47539 * 300.00674 * 8 7 6 37 37 H 1.08998 * 109.47013 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 39 39 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 40 40 H 1.09004 * 109.46930 * 299.99887 * 15 14 13 41 41 H 1.09004 * 109.47059 * 59.99488 * 15 14 13 42 42 H 1.09004 * 109.46976 * 299.99579 * 16 15 14 43 43 H 1.08992 * 109.47530 * 59.99431 * 16 15 14 44 44 H 0.97002 * 119.99803 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6694 3.5716 -1.1811 8 6 4.0742 2.8877 0.1263 9 6 3.5648 1.4450 0.1260 10 1 3.8528 0.9578 1.0576 11 6 4.1662 0.7001 -1.0378 12 8 3.4489 0.2168 -1.8814 13 8 5.4989 0.5734 -1.1371 14 6 6.0080 -0.1562 -2.2846 15 6 7.5364 -0.1965 -2.2263 16 6 8.0728 -0.9648 -3.4357 17 6 9.5782 -1.0039 -3.3786 18 1 10.1001 -0.5286 -2.5611 19 6 10.2893 -1.6472 -4.3693 20 7 9.6537 -2.2264 -5.3645 21 14 12.1553 -1.6950 -4.2988 22 1 12.6235 -0.9746 -3.0878 23 1 12.6125 -3.1068 -4.2422 24 1 12.7133 -1.0423 -5.5103 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 2.0699 1.5875 -2.1492 32 1 1.7096 4.1080 -0.4654 33 1 1.8559 4.0567 -2.2383 34 1 4.0323 4.5995 -1.1805 35 1 4.1045 3.0329 -2.0228 36 1 3.6392 3.4264 0.9680 37 1 5.1605 2.8890 0.2158 38 1 5.6173 -1.1738 -2.2707 39 1 5.6920 0.3418 -3.2012 40 1 7.9274 0.8209 -2.2400 41 1 7.8520 -0.6947 -1.3096 42 1 7.6818 -1.9822 -3.4224 43 1 7.7571 -0.4662 -4.3521 44 1 10.1540 -2.6787 -6.0617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796335222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:41 Heat of formation + Delta-G solvation = -134.851098 kcal Electronic energy + Delta-G solvation = -21124.211317 eV Core-core repulsion = 18039.774487 eV Total energy + Delta-G solvation = -3084.436830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00561 -38.34483 -36.14519 -34.16381 -33.85433 -31.87372 -31.22875 -29.14819 -27.13062 -24.42095 -23.87089 -22.88910 -21.33270 -20.79300 -20.38012 -19.43047 -17.19522 -16.49231 -16.34523 -15.62897 -15.60496 -14.75807 -14.47205 -14.31303 -14.09588 -13.71377 -13.40554 -13.22950 -12.78596 -12.41648 -12.32261 -12.05111 -11.98937 -11.82897 -11.64381 -11.50115 -11.16222 -11.04704 -10.98778 -10.71855 -10.62297 -10.57935 -10.28381 -10.17234 -10.07143 -9.79750 -9.69896 -9.41835 -9.14116 -8.39181 -6.03735 -4.06622 2.41482 2.97063 3.29876 3.37333 3.41763 4.36712 4.43370 4.50786 4.57126 4.91621 4.95725 5.08544 5.09690 5.21488 5.28509 5.32320 5.32680 5.37753 5.51843 5.56784 5.59850 5.65352 5.67247 5.75960 5.83186 5.89023 5.99883 6.02668 6.06768 6.08431 6.10917 6.24704 6.33196 6.35800 6.55198 6.65131 6.92864 7.03029 7.60628 7.71572 7.94737 8.04342 8.36272 8.99922 9.57695 11.07763 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.003365 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.767788 B = 8319.479131 C = 8670.955734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C -0.066 4.066 4 H 0.078 0.922 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.079 4.079 10 H 0.104 0.896 11 C 0.464 3.536 12 O -0.504 6.504 13 O -0.358 6.358 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.048 10.067 12.313 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.085 4.085 4 H 0.096 0.904 5 C -0.169 4.169 6 C -0.157 4.157 7 C -0.163 4.163 8 C -0.148 4.148 9 C -0.098 4.098 10 H 0.122 0.878 11 C 0.307 3.693 12 O -0.393 6.393 13 O -0.275 6.275 14 C -0.005 4.005 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.192 9.806 11.873 23.080 hybrid contribution 1.009 -0.223 -0.175 1.048 sum -16.182 9.583 11.699 22.149 Atomic orbital electron populations 1.21767 0.96022 1.01338 1.01442 1.21865 0.95920 0.96193 1.03434 1.21029 0.91600 0.96989 0.98860 0.90412 1.21920 1.00775 0.95361 0.98858 1.21557 0.95427 0.97181 1.01513 1.21603 0.96290 1.00835 0.97608 1.21532 1.01904 0.92690 0.98658 1.21183 0.96067 0.96648 0.95893 0.87777 1.23549 0.81240 0.77616 0.86887 1.90521 1.61318 1.45836 1.41661 1.86506 1.23222 1.69275 1.48457 1.23459 0.96667 0.95122 0.85221 1.21751 0.88972 1.01868 1.02027 1.19053 0.95904 0.95059 0.91337 1.21217 0.91420 1.34764 1.08484 0.92388 1.25037 0.98714 0.95368 0.95398 1.69979 1.35478 1.36049 1.11853 0.86491 0.85511 0.77750 0.78003 1.19660 1.20975 1.20971 0.92517 0.93025 0.93282 0.89174 0.92651 0.91930 0.89142 0.92240 0.92099 0.91486 0.92019 0.90617 0.90327 0.91668 0.91687 0.92223 0.92221 0.96273 0.96271 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.14 -1.45 5.03 -26.73 -0.13 -1.58 16 3 C -0.07 -0.66 1.93 -90.62 -0.18 -0.83 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.13 -1.39 4.69 -26.73 -0.13 -1.52 16 6 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 7 C -0.13 -1.29 5.70 -26.73 -0.15 -1.44 16 8 C -0.11 -1.06 5.39 -26.73 -0.14 -1.20 16 9 C -0.08 -0.85 2.65 -91.77 -0.24 -1.10 16 10 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 11 C 0.46 6.85 5.46 36.00 0.20 7.05 16 12 O -0.50 -8.40 11.12 -18.75 -0.21 -8.60 16 13 O -0.36 -5.97 10.12 -39.26 -0.40 -6.37 16 14 C 0.07 1.27 5.47 37.16 0.20 1.47 16 15 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 16 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 17 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 1.20 5.65 -51.93 -0.29 0.91 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.60 6.57 -51.92 -0.34 0.26 16 31 H 0.09 1.21 5.52 -51.93 -0.29 0.93 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.78 7.22 -51.93 -0.37 0.40 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.80 8.11 -51.93 -0.42 0.37 16 38 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -30.26 340.17 -8.78 -39.04 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.94 Total: -2.72 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.07 Total: -16.88 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.61 Total: -14.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.26 -8.78 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796335222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.815 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds