Wall clock time and date at job start Mon Mar 30 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.08993 * 109.47223 * 55.00451 * 3 2 1 5 5 C 1.52995 * 109.47074 * 294.99500 * 3 2 1 6 6 C 1.53002 * 109.47074 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46882 * 60.00715 * 6 5 3 8 8 C 1.53000 * 109.47002 * 299.99420 * 7 6 5 9 9 C 1.53002 * 109.46829 * 60.00547 * 8 7 6 10 10 H 1.09003 * 109.47318 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47461 * 59.99692 * 9 8 7 12 12 O 1.20825 * 120.00224 * 240.00088 * 11 9 8 13 13 O 1.34232 * 119.99727 * 60.00164 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46965 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46857 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00204 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99565 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00144 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47376 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47084 * 120.00373 * 21 19 17 24 24 H 1.48497 * 109.47286 * 240.00177 * 21 19 17 25 25 H 1.09000 * 109.46976 * 60.00216 * 1 2 3 26 26 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47276 * 299.99719 * 1 2 3 28 28 H 1.09002 * 109.47281 * 239.99699 * 2 1 3 29 29 H 1.09000 * 109.46976 * 119.99783 * 2 1 3 30 30 H 1.09008 * 109.46766 * 60.00509 * 5 3 2 31 31 H 1.09003 * 109.47880 * 300.00574 * 5 3 2 32 32 H 1.08994 * 109.47409 * 300.00188 * 6 5 3 33 33 H 1.09003 * 109.47318 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46780 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.47529 * 59.99546 * 7 6 5 36 36 H 1.08994 * 109.47539 * 300.00674 * 8 7 6 37 37 H 1.08998 * 109.47013 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 39 39 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 40 40 H 1.09004 * 109.46930 * 299.99887 * 15 14 13 41 41 H 1.09004 * 109.47059 * 59.99488 * 15 14 13 42 42 H 1.09004 * 109.46976 * 299.99579 * 16 15 14 43 43 H 1.08992 * 109.47530 * 59.99431 * 16 15 14 44 44 H 0.97002 * 119.99803 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6694 3.5716 -1.1811 8 6 4.0742 2.8877 0.1263 9 6 3.5648 1.4450 0.1260 10 1 3.8528 0.9578 1.0576 11 6 4.1662 0.7001 -1.0378 12 8 3.4489 0.2168 -1.8814 13 8 5.4989 0.5734 -1.1371 14 6 6.0080 -0.1562 -2.2846 15 6 7.5364 -0.1965 -2.2263 16 6 8.0728 -0.9648 -3.4357 17 6 9.5782 -1.0039 -3.3786 18 1 10.1001 -0.5286 -2.5611 19 6 10.2893 -1.6472 -4.3693 20 7 9.6537 -2.2264 -5.3645 21 14 12.1553 -1.6950 -4.2988 22 1 12.6235 -0.9746 -3.0878 23 1 12.6125 -3.1068 -4.2422 24 1 12.7133 -1.0423 -5.5103 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 2.0699 1.5875 -2.1492 32 1 1.7096 4.1080 -0.4654 33 1 1.8559 4.0567 -2.2383 34 1 4.0323 4.5995 -1.1805 35 1 4.1045 3.0329 -2.0228 36 1 3.6392 3.4264 0.9680 37 1 5.1605 2.8890 0.2158 38 1 5.6173 -1.1738 -2.2707 39 1 5.6920 0.3418 -3.2012 40 1 7.9274 0.8209 -2.2400 41 1 7.8520 -0.6947 -1.3096 42 1 7.6818 -1.9822 -3.4224 43 1 7.7571 -0.4662 -4.3521 44 1 10.1540 -2.6787 -6.0617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796335222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:41 Heat of formation + Delta-G solvation = -149.467453 kcal Electronic energy + Delta-G solvation = -21124.845129 eV Core-core repulsion = 18039.774487 eV Total energy + Delta-G solvation = -3085.070642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10980 -39.41967 -37.42994 -35.96962 -34.80648 -33.72047 -32.23889 -29.92418 -29.02028 -25.81300 -24.74987 -24.32368 -22.31819 -22.19220 -21.58552 -20.53851 -18.70909 -18.17912 -17.75043 -16.81291 -16.56059 -16.46900 -15.88220 -15.35986 -14.99686 -14.81246 -14.57097 -14.23021 -14.09415 -13.81963 -13.73963 -13.54083 -13.06093 -12.93437 -12.84108 -12.51421 -12.47639 -12.39758 -12.28356 -12.08346 -11.97217 -11.89553 -11.58456 -11.53740 -11.30901 -11.26847 -10.94866 -10.86292 -10.68323 -10.59756 -8.23407 -6.35198 1.24457 1.40615 1.40941 1.54671 1.73684 2.40457 3.10432 3.49251 3.68504 3.71096 3.97397 4.04655 4.05782 4.15207 4.19186 4.32724 4.39263 4.45358 4.50767 4.56722 4.61178 4.74613 4.77227 4.82255 4.85492 4.95523 5.01816 5.05616 5.08465 5.16428 5.24240 5.26578 5.31680 5.32526 5.40858 5.46332 5.48698 5.52796 5.61006 5.77966 5.82627 6.17440 6.79372 6.83180 7.34488 8.89117 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.003365 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.767788 B = 8319.479131 C = 8670.955734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C -0.062 4.062 4 H 0.110 0.890 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.129 4.129 8 C -0.107 4.107 9 C -0.075 4.075 10 H 0.126 0.874 11 C 0.456 3.544 12 O -0.526 6.526 13 O -0.361 6.361 14 C 0.080 3.920 15 C -0.093 4.093 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.065 0.935 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.066 0.934 42 H -0.004 1.004 43 H -0.005 1.005 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.163 11.628 14.802 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.080 4.080 4 H 0.128 0.872 5 C -0.169 4.169 6 C -0.153 4.153 7 C -0.166 4.166 8 C -0.144 4.144 9 C -0.094 4.094 10 H 0.144 0.856 11 C 0.301 3.699 12 O -0.416 6.416 13 O -0.277 6.277 14 C 0.006 3.994 15 C -0.130 4.130 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.183 1.183 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.321 11.377 14.377 25.222 hybrid contribution 0.953 -0.717 -0.979 1.543 sum -16.367 10.661 13.397 23.686 Atomic orbital electron populations 1.21738 0.94724 1.01576 1.02185 1.21831 0.97118 0.96568 1.02045 1.21086 0.90812 0.96667 0.99465 0.87153 1.21872 1.01172 0.95890 0.98002 1.21545 0.94715 0.96447 1.02547 1.21633 0.96912 1.01238 0.96840 1.21577 1.01760 0.91763 0.99310 1.21421 0.96464 0.97076 0.94443 0.85645 1.24586 0.80149 0.77301 0.87835 1.90543 1.61442 1.46760 1.42852 1.86497 1.24871 1.69136 1.47237 1.23028 0.95318 0.95066 0.85965 1.21440 0.90409 1.01313 0.99858 1.18934 0.95465 0.94174 0.92553 1.21651 0.92635 1.34915 1.08864 0.91650 1.26035 1.04351 0.94753 0.94851 1.70113 1.37751 1.36843 1.12703 0.85316 0.78683 0.78045 0.78516 1.18299 1.20341 1.20351 0.92900 0.93161 0.91298 0.92675 0.91906 0.90952 0.92844 0.89607 0.92370 0.90076 0.95531 0.87171 0.90963 0.92317 0.92528 0.91606 0.91517 0.98610 0.98662 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.67 71.98 0.70 -1.65 16 2 C -0.14 -2.76 5.03 30.60 0.15 -2.61 16 3 C -0.06 -1.08 1.93 -10.79 -0.02 -1.10 16 4 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.13 -2.64 4.69 30.59 0.14 -2.49 16 6 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 7 C -0.13 -2.45 5.70 30.59 0.17 -2.27 16 8 C -0.11 -1.75 5.39 30.59 0.16 -1.59 16 9 C -0.08 -1.48 2.65 -11.54 -0.03 -1.51 16 10 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 11 C 0.46 13.57 5.46 71.23 0.39 13.96 16 12 O -0.53 -18.31 11.12 21.97 0.24 -18.07 16 13 O -0.36 -12.12 10.12 -51.44 -0.52 -12.64 16 14 C 0.08 3.08 5.47 71.98 0.39 3.48 16 15 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 21 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H 0.05 0.88 6.56 -2.39 -0.02 0.87 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 1.51 5.65 -2.39 -0.01 1.49 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.28 6.57 -2.38 -0.02 1.26 16 31 H 0.05 1.48 5.52 -2.39 -0.01 1.47 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.03 0.68 7.22 -2.39 -0.02 0.66 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 38 H 0.06 2.31 8.13 -2.38 -0.02 2.29 16 39 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 40 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -67.14 340.17 6.23 -60.91 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.94 Total: 10.86 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.26 Total: -30.30 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.28 Total: -30.71 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.14 6.23 -60.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796335222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.561 kcal (2) G-P(sol) polarization free energy of solvation -67.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds