Wall clock time and date at job start Mon Mar 30 2020 00:54:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52996 * 109.47494 * 2 1
4 4 H 1.09004 * 109.47368 * 305.00004 * 3 2 1
5 5 C 1.53000 * 109.47328 * 64.99792 * 3 2 1
6 6 C 1.52997 * 109.47060 * 60.00126 * 5 3 2
7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3
8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5
9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6
10 10 H 1.09002 * 109.46695 * 59.99734 * 9 8 7
11 11 C 1.50693 * 109.46989 * 180.02562 * 9 8 7
12 12 O 1.20833 * 119.99559 * 120.00625 * 11 9 8
13 13 O 1.34226 * 120.00533 * 299.99591 * 11 9 8
14 14 C 1.45194 * 117.00487 * 180.02562 * 13 11 9
15 15 C 1.52996 * 109.47456 * 180.02562 * 14 13 11
16 16 C 1.53002 * 109.47292 * 180.02562 * 15 14 13
17 17 C 1.50701 * 109.46954 * 180.02562 * 16 15 14
18 18 H 1.07995 * 120.00281 * 359.97438 * 17 16 15
19 19 C 1.37874 * 119.99589 * 180.02562 * 17 16 15
20 20 N 1.31515 * 120.00189 * 359.97438 * 19 17 16
21 21 Si 1.86810 * 119.99752 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.46788 * 89.99791 * 21 19 17
23 23 H 1.48495 * 109.46780 * 209.99726 * 21 19 17
24 24 H 1.48501 * 109.46782 * 329.99712 * 21 19 17
25 25 H 1.09007 * 109.46934 * 60.00057 * 1 2 3
26 26 H 1.09002 * 109.47735 * 180.02562 * 1 2 3
27 27 H 1.09006 * 109.47320 * 300.00202 * 1 2 3
28 28 H 1.09006 * 109.47320 * 239.99798 * 2 1 3
29 29 H 1.08998 * 109.47044 * 120.00202 * 2 1 3
30 30 H 1.09002 * 109.47398 * 180.02562 * 5 3 2
31 31 H 1.09001 * 109.47194 * 300.00476 * 5 3 2
32 32 H 1.08996 * 109.47853 * 180.02562 * 6 5 3
33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 3
34 34 H 1.09000 * 109.47486 * 180.02562 * 7 6 5
35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 5
36 36 H 1.09002 * 109.46935 * 299.99411 * 8 7 6
37 37 H 1.09001 * 109.46812 * 179.97438 * 8 7 6
38 38 H 1.09002 * 109.46950 * 300.00619 * 14 13 11
39 39 H 1.08999 * 109.47207 * 60.00254 * 14 13 11
40 40 H 1.09002 * 109.47319 * 300.00114 * 15 14 13
41 41 H 1.08999 * 109.46933 * 59.99807 * 15 14 13
42 42 H 1.09002 * 109.46702 * 299.99466 * 16 15 14
43 43 H 1.08991 * 109.47093 * 59.99935 * 16 15 14
44 44 H 0.97010 * 119.99857 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 1.6353 2.1266 1.3073
6 6 2.2453 1.3700 2.4890
7 6 3.7701 1.3717 2.3633
8 6 4.1748 0.6876 1.0559
9 6 3.5648 1.4442 -0.1258
10 1 3.9282 2.4719 -0.1257
11 6 3.9630 0.7701 -1.4133
12 8 3.1142 0.3335 -2.1543
13 8 5.2605 0.6547 -1.7373
14 6 5.5704 -0.0055 -2.9927
15 6 7.0873 -0.0429 -3.1886
16 6 7.4138 -0.7381 -4.5119
17 6 8.9080 -0.7754 -4.7044
18 1 9.5595 -0.3459 -3.9579
19 6 9.4431 -1.3570 -5.8341
20 7 8.6496 -1.8796 -6.7435
21 14 11.2952 -1.4027 -6.0732
22 1 11.8408 -2.6479 -5.4757
23 1 11.6079 -1.3717 -7.5245
24 1 11.9091 -0.2247 -5.4093
25 1 -0.3633 0.5139 -0.8901
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8900
28 1 1.8933 -0.5139 -0.8900
29 1 1.8932 -0.5139 0.8900
30 1 1.9983 3.1544 1.3071
31 1 0.5489 2.1253 1.3969
32 1 1.9566 1.8570 3.4204
33 1 1.8819 0.3423 2.4890
34 1 4.2047 0.8322 3.2049
35 1 4.1334 2.3993 2.3633
36 1 3.8115 -0.3401 1.0559
37 1 5.2612 0.6893 0.9662
38 1 5.1816 -1.0237 -2.9734
39 1 5.1110 0.5432 -3.8149
40 1 7.4764 0.9751 -3.2077
41 1 7.5463 -0.5919 -2.3664
42 1 7.0247 -1.7561 -4.4930
43 1 6.9548 -0.1888 -5.3337
44 1 9.0261 -2.2885 -7.5386
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000796335223.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:44
Heat of formation + Delta-G solvation = -135.197111 kcal
Electronic energy + Delta-G solvation = -20864.882342 eV
Core-core repulsion = 17780.430508 eV
Total energy + Delta-G solvation = -3084.451834 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.87028 -38.81328 -36.33748 -34.01787 -33.36082 -31.90572 -31.30857 -29.50342
-27.12888 -24.53038 -23.72144 -22.93267 -22.17116 -20.62112 -20.26785 -18.51026
-17.38195 -16.73052 -16.32046 -16.13563 -15.32660 -15.04189 -14.59402 -14.46819
-14.02464 -13.59827 -13.49285 -13.11794 -12.78320 -12.51486 -12.35263 -12.16757
-12.00628 -11.83508 -11.68777 -11.42814 -11.27422 -10.97559 -10.87794 -10.77674
-10.62954 -10.59001 -10.35981 -10.25527 -10.18759 -9.85902 -9.69591 -9.44083
-9.15577 -8.38653 -6.03374 -4.06439 2.38757 2.94630 3.31050 3.37176
3.40802 4.33969 4.41939 4.43290 4.55774 4.88094 4.91884 4.99677
5.06266 5.10935 5.18113 5.25350 5.32561 5.42488 5.44190 5.53331
5.55992 5.59783 5.65980 5.77485 5.80319 5.84125 5.84204 5.96052
5.97144 6.03810 6.10966 6.15853 6.27603 6.36535 6.55218 6.60482
6.90163 7.00972 7.60615 7.71796 7.94860 8.01090 8.36353 8.99881
9.57856 11.08063
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.037955 B = 0.003122 C = 0.002958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 737.544304 B = 8966.564584 C = 9464.072329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.138 4.138
3 C -0.070 4.070
4 H 0.077 0.923
5 C -0.114 4.114
6 C -0.124 4.124
7 C -0.116 4.116
8 C -0.114 4.114
9 C -0.076 4.076
10 H 0.105 0.895
11 C 0.459 3.541
12 O -0.507 6.507
13 O -0.357 6.357
14 C 0.068 3.932
15 C -0.109 4.109
16 C 0.024 3.976
17 C -0.521 4.521
18 H 0.057 0.943
19 C 0.056 3.944
20 N -0.895 5.895
21 Si 0.895 3.105
22 H -0.280 1.280
23 H -0.286 1.286
24 H -0.273 1.273
25 H 0.052 0.948
26 H 0.050 0.950
27 H 0.051 0.949
28 H 0.087 0.913
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.067 0.933
34 H 0.066 0.934
35 H 0.064 0.936
36 H 0.070 0.930
37 H 0.078 0.922
38 H 0.065 0.935
39 H 0.065 0.935
40 H 0.059 0.941
41 H 0.059 0.941
42 H 0.019 0.981
43 H 0.019 0.981
44 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.502 7.356 18.702 24.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.174 4.174
3 C -0.089 4.089
4 H 0.095 0.905
5 C -0.152 4.152
6 C -0.162 4.162
7 C -0.154 4.154
8 C -0.151 4.151
9 C -0.095 4.095
10 H 0.123 0.877
11 C 0.302 3.698
12 O -0.396 6.396
13 O -0.274 6.274
14 C -0.005 4.005
15 C -0.146 4.146
16 C -0.013 4.013
17 C -0.560 4.560
18 H 0.076 0.924
19 C -0.145 4.145
20 N -0.534 5.534
21 Si 0.723 3.277
22 H -0.206 1.206
23 H -0.212 1.212
24 H -0.198 1.198
25 H 0.072 0.928
26 H 0.069 0.931
27 H 0.070 0.930
28 H 0.105 0.895
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.087 0.913
32 H 0.079 0.921
33 H 0.086 0.914
34 H 0.085 0.915
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.097 0.903
38 H 0.084 0.916
39 H 0.084 0.916
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.037 0.963
43 H 0.037 0.963
44 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -14.719 7.119 18.271 24.519
hybrid contribution 0.956 -0.134 -0.482 1.079
sum -13.763 6.985 17.789 23.551
Atomic orbital electron populations
1.21756 0.96071 1.01292 1.01379 1.21933 0.95944 0.96148 1.03424
1.21000 0.91925 0.97738 0.98203 0.90473 1.21597 1.00713 0.98981
0.93883 1.21617 0.95517 1.01141 0.97895 1.21521 0.95904 1.01030
0.96916 1.21561 1.01330 0.99519 0.92733 1.21107 0.97297 1.00824
0.90247 0.87694 1.23657 0.81199 0.77052 0.87872 1.90592 1.51438
1.45719 1.51861 1.86499 1.26888 1.71769 1.42232 1.23473 0.99191
0.96392 0.81470 1.21754 0.89495 1.01891 1.01482 1.19051 0.96883
0.95527 0.89868 1.21176 0.91724 1.37812 1.05253 0.92432 1.25034
0.98174 0.95347 0.95928 1.69971 1.34741 1.38666 1.09999 0.86546
0.85452 0.78473 0.77264 1.20608 1.21186 1.19799 0.92844 0.93087
0.93019 0.89478 0.91951 0.91908 0.91294 0.92069 0.91449 0.91537
0.91681 0.91105 0.90334 0.91641 0.91634 0.92205 0.92195 0.96270
0.96256 0.92895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.67 37.15 0.36 -1.01 16
2 C -0.14 -1.47 4.43 -26.74 -0.12 -1.58 16
3 C -0.07 -0.70 1.83 -90.62 -0.17 -0.86 16
4 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16
5 C -0.11 -0.87 5.21 -26.73 -0.14 -1.01 16
6 C -0.12 -0.88 5.65 -26.73 -0.15 -1.03 16
7 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16
8 C -0.11 -1.10 4.86 -26.73 -0.13 -1.23 16
9 C -0.08 -0.83 2.41 -91.78 -0.22 -1.05 16
10 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16
11 C 0.46 6.94 6.93 36.00 0.25 7.19 16
12 O -0.51 -8.85 13.42 -18.76 -0.25 -9.10 16
13 O -0.36 -6.03 10.12 -39.25 -0.40 -6.42 16
14 C 0.07 1.27 5.47 37.16 0.20 1.48 16
15 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16
16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16
17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16
18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16
19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
20 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16
21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16
22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16
28 H 0.09 1.19 5.42 -51.93 -0.28 0.91 16
29 H 0.06 0.61 4.83 -51.93 -0.25 0.36 16
30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16
32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
33 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16
34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16
37 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16
38 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16
39 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16
40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
LS Contribution 339.48 15.07 5.12 5.12
Total: -1.00 -30.62 339.48 -8.55 -39.17
By element:
Atomic # 1 Polarization: 4.27 SS G_CDS: -7.76 Total: -3.49 kcal
Atomic # 6 Polarization: -14.68 SS G_CDS: -0.97 Total: -15.64 kcal
Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal
Atomic # 8 Polarization: -14.87 SS G_CDS: -0.65 Total: -15.52 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -30.62 -8.55 -39.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000796335223.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.029 kcal
(2) G-P(sol) polarization free energy of solvation -30.620 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds