Wall clock time and date at job start Mon Mar 30 2020 00:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47494 * 2 1 4 4 H 1.09004 * 109.47368 * 305.00004 * 3 2 1 5 5 C 1.53000 * 109.47328 * 64.99792 * 3 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 10 10 H 1.09002 * 109.46695 * 59.99734 * 9 8 7 11 11 C 1.50693 * 109.46989 * 180.02562 * 9 8 7 12 12 O 1.20833 * 119.99559 * 120.00625 * 11 9 8 13 13 O 1.34226 * 120.00533 * 299.99591 * 11 9 8 14 14 C 1.45194 * 117.00487 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47456 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47292 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46954 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00281 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99589 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99752 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46788 * 89.99791 * 21 19 17 23 23 H 1.48495 * 109.46780 * 209.99726 * 21 19 17 24 24 H 1.48501 * 109.46782 * 329.99712 * 21 19 17 25 25 H 1.09007 * 109.46934 * 60.00057 * 1 2 3 26 26 H 1.09002 * 109.47735 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47320 * 300.00202 * 1 2 3 28 28 H 1.09006 * 109.47320 * 239.99798 * 2 1 3 29 29 H 1.08998 * 109.47044 * 120.00202 * 2 1 3 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 3 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 34 34 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 37 37 H 1.09001 * 109.46812 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46950 * 300.00619 * 14 13 11 39 39 H 1.08999 * 109.47207 * 60.00254 * 14 13 11 40 40 H 1.09002 * 109.47319 * 300.00114 * 15 14 13 41 41 H 1.08999 * 109.46933 * 59.99807 * 15 14 13 42 42 H 1.09002 * 109.46702 * 299.99466 * 16 15 14 43 43 H 1.08991 * 109.47093 * 59.99935 * 16 15 14 44 44 H 0.97010 * 119.99857 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.2453 1.3700 2.4890 7 6 3.7701 1.3717 2.3633 8 6 4.1748 0.6876 1.0559 9 6 3.5648 1.4442 -0.1258 10 1 3.9282 2.4719 -0.1257 11 6 3.9630 0.7701 -1.4133 12 8 3.1142 0.3335 -2.1543 13 8 5.2605 0.6547 -1.7373 14 6 5.5704 -0.0055 -2.9927 15 6 7.0873 -0.0429 -3.1886 16 6 7.4138 -0.7381 -4.5119 17 6 8.9080 -0.7754 -4.7044 18 1 9.5595 -0.3459 -3.9579 19 6 9.4431 -1.3570 -5.8341 20 7 8.6496 -1.8796 -6.7435 21 14 11.2952 -1.4027 -6.0732 22 1 11.8408 -2.6479 -5.4757 23 1 11.6079 -1.3717 -7.5245 24 1 11.9091 -0.2247 -5.4093 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.9983 3.1544 1.3071 31 1 0.5489 2.1253 1.3969 32 1 1.9566 1.8570 3.4204 33 1 1.8819 0.3423 2.4890 34 1 4.2047 0.8322 3.2049 35 1 4.1334 2.3993 2.3633 36 1 3.8115 -0.3401 1.0559 37 1 5.2612 0.6893 0.9662 38 1 5.1816 -1.0237 -2.9734 39 1 5.1110 0.5432 -3.8149 40 1 7.4764 0.9751 -3.2077 41 1 7.5463 -0.5919 -2.3664 42 1 7.0247 -1.7561 -4.4930 43 1 6.9548 -0.1888 -5.3337 44 1 9.0261 -2.2885 -7.5386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796335223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:44 Heat of formation + Delta-G solvation = -135.197111 kcal Electronic energy + Delta-G solvation = -20864.882342 eV Core-core repulsion = 17780.430508 eV Total energy + Delta-G solvation = -3084.451834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87028 -38.81328 -36.33748 -34.01787 -33.36082 -31.90572 -31.30857 -29.50342 -27.12888 -24.53038 -23.72144 -22.93267 -22.17116 -20.62112 -20.26785 -18.51026 -17.38195 -16.73052 -16.32046 -16.13563 -15.32660 -15.04189 -14.59402 -14.46819 -14.02464 -13.59827 -13.49285 -13.11794 -12.78320 -12.51486 -12.35263 -12.16757 -12.00628 -11.83508 -11.68777 -11.42814 -11.27422 -10.97559 -10.87794 -10.77674 -10.62954 -10.59001 -10.35981 -10.25527 -10.18759 -9.85902 -9.69591 -9.44083 -9.15577 -8.38653 -6.03374 -4.06439 2.38757 2.94630 3.31050 3.37176 3.40802 4.33969 4.41939 4.43290 4.55774 4.88094 4.91884 4.99677 5.06266 5.10935 5.18113 5.25350 5.32561 5.42488 5.44190 5.53331 5.55992 5.59783 5.65980 5.77485 5.80319 5.84125 5.84204 5.96052 5.97144 6.03810 6.10966 6.15853 6.27603 6.36535 6.55218 6.60482 6.90163 7.00972 7.60615 7.71796 7.94860 8.01090 8.36353 8.99881 9.57856 11.08063 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037955 B = 0.003122 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.544304 B = 8966.564584 C = 9464.072329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C -0.070 4.070 4 H 0.077 0.923 5 C -0.114 4.114 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.114 4.114 9 C -0.076 4.076 10 H 0.105 0.895 11 C 0.459 3.541 12 O -0.507 6.507 13 O -0.357 6.357 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 7.356 18.702 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.152 4.152 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.095 4.095 10 H 0.123 0.877 11 C 0.302 3.698 12 O -0.396 6.396 13 O -0.274 6.274 14 C -0.005 4.005 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.719 7.119 18.271 24.519 hybrid contribution 0.956 -0.134 -0.482 1.079 sum -13.763 6.985 17.789 23.551 Atomic orbital electron populations 1.21756 0.96071 1.01292 1.01379 1.21933 0.95944 0.96148 1.03424 1.21000 0.91925 0.97738 0.98203 0.90473 1.21597 1.00713 0.98981 0.93883 1.21617 0.95517 1.01141 0.97895 1.21521 0.95904 1.01030 0.96916 1.21561 1.01330 0.99519 0.92733 1.21107 0.97297 1.00824 0.90247 0.87694 1.23657 0.81199 0.77052 0.87872 1.90592 1.51438 1.45719 1.51861 1.86499 1.26888 1.71769 1.42232 1.23473 0.99191 0.96392 0.81470 1.21754 0.89495 1.01891 1.01482 1.19051 0.96883 0.95527 0.89868 1.21176 0.91724 1.37812 1.05253 0.92432 1.25034 0.98174 0.95347 0.95928 1.69971 1.34741 1.38666 1.09999 0.86546 0.85452 0.78473 0.77264 1.20608 1.21186 1.19799 0.92844 0.93087 0.93019 0.89478 0.91951 0.91908 0.91294 0.92069 0.91449 0.91537 0.91681 0.91105 0.90334 0.91641 0.91634 0.92205 0.92195 0.96270 0.96256 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.15 0.36 -1.01 16 2 C -0.14 -1.47 4.43 -26.74 -0.12 -1.58 16 3 C -0.07 -0.70 1.83 -90.62 -0.17 -0.86 16 4 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 5 C -0.11 -0.87 5.21 -26.73 -0.14 -1.01 16 6 C -0.12 -0.88 5.65 -26.73 -0.15 -1.03 16 7 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 8 C -0.11 -1.10 4.86 -26.73 -0.13 -1.23 16 9 C -0.08 -0.83 2.41 -91.78 -0.22 -1.05 16 10 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.46 6.94 6.93 36.00 0.25 7.19 16 12 O -0.51 -8.85 13.42 -18.76 -0.25 -9.10 16 13 O -0.36 -6.03 10.12 -39.25 -0.40 -6.42 16 14 C 0.07 1.27 5.47 37.16 0.20 1.48 16 15 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.09 1.19 5.42 -51.93 -0.28 0.91 16 29 H 0.06 0.61 4.83 -51.93 -0.25 0.36 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.71 6.54 -51.93 -0.34 0.37 16 37 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 39 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -30.62 339.48 -8.55 -39.17 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.76 Total: -3.49 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.97 Total: -15.64 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.65 Total: -15.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.62 -8.55 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796335223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.029 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds