Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47494 * 2 1 4 4 H 1.09004 * 109.47368 * 305.00004 * 3 2 1 5 5 C 1.53000 * 109.47328 * 64.99792 * 3 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 10 10 H 1.09002 * 109.46695 * 59.99734 * 9 8 7 11 11 C 1.50693 * 109.46989 * 180.02562 * 9 8 7 12 12 O 1.20833 * 119.99559 * 120.00625 * 11 9 8 13 13 O 1.34226 * 120.00533 * 299.99591 * 11 9 8 14 14 C 1.45194 * 117.00487 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47456 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47292 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46954 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00281 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99589 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99752 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46788 * 89.99791 * 21 19 17 23 23 H 1.48495 * 109.46780 * 209.99726 * 21 19 17 24 24 H 1.48501 * 109.46782 * 329.99712 * 21 19 17 25 25 H 1.09007 * 109.46934 * 60.00057 * 1 2 3 26 26 H 1.09002 * 109.47735 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47320 * 300.00202 * 1 2 3 28 28 H 1.09006 * 109.47320 * 239.99798 * 2 1 3 29 29 H 1.08998 * 109.47044 * 120.00202 * 2 1 3 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 3 2 32 32 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 34 34 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 37 37 H 1.09001 * 109.46812 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46950 * 300.00619 * 14 13 11 39 39 H 1.08999 * 109.47207 * 60.00254 * 14 13 11 40 40 H 1.09002 * 109.47319 * 300.00114 * 15 14 13 41 41 H 1.08999 * 109.46933 * 59.99807 * 15 14 13 42 42 H 1.09002 * 109.46702 * 299.99466 * 16 15 14 43 43 H 1.08991 * 109.47093 * 59.99935 * 16 15 14 44 44 H 0.97010 * 119.99857 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.2453 1.3700 2.4890 7 6 3.7701 1.3717 2.3633 8 6 4.1748 0.6876 1.0559 9 6 3.5648 1.4442 -0.1258 10 1 3.9282 2.4719 -0.1257 11 6 3.9630 0.7701 -1.4133 12 8 3.1142 0.3335 -2.1543 13 8 5.2605 0.6547 -1.7373 14 6 5.5704 -0.0055 -2.9927 15 6 7.0873 -0.0429 -3.1886 16 6 7.4138 -0.7381 -4.5119 17 6 8.9080 -0.7754 -4.7044 18 1 9.5595 -0.3459 -3.9579 19 6 9.4431 -1.3570 -5.8341 20 7 8.6496 -1.8796 -6.7435 21 14 11.2952 -1.4027 -6.0732 22 1 11.8408 -2.6479 -5.4757 23 1 11.6079 -1.3717 -7.5245 24 1 11.9091 -0.2247 -5.4093 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.9983 3.1544 1.3071 31 1 0.5489 2.1253 1.3969 32 1 1.9566 1.8570 3.4204 33 1 1.8819 0.3423 2.4890 34 1 4.2047 0.8322 3.2049 35 1 4.1334 2.3993 2.3633 36 1 3.8115 -0.3401 1.0559 37 1 5.2612 0.6893 0.9662 38 1 5.1816 -1.0237 -2.9734 39 1 5.1110 0.5432 -3.8149 40 1 7.4764 0.9751 -3.2077 41 1 7.5463 -0.5919 -2.3664 42 1 7.0247 -1.7561 -4.4930 43 1 6.9548 -0.1888 -5.3337 44 1 9.0261 -2.2885 -7.5386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796335223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = -150.055333 kcal Electronic energy + Delta-G solvation = -20865.526643 eV Core-core repulsion = 17780.430508 eV Total energy + Delta-G solvation = -3085.096135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99629 -39.79750 -37.70033 -35.96331 -34.17692 -33.69079 -32.29690 -30.22280 -29.01895 -25.86416 -24.64992 -24.30051 -22.89189 -22.18822 -21.68689 -19.28207 -18.76268 -18.41201 -17.67826 -17.55359 -16.51055 -16.21235 -16.06524 -15.54770 -15.16185 -14.79191 -14.34771 -14.22382 -13.92442 -13.87799 -13.69371 -13.59110 -13.18171 -12.95847 -12.82036 -12.52358 -12.45221 -12.40262 -12.16134 -12.11737 -11.93856 -11.83061 -11.56632 -11.51331 -11.41035 -11.28208 -10.99903 -10.89195 -10.70585 -10.58839 -8.23078 -6.35003 1.16178 1.40663 1.42453 1.53595 1.68380 2.40588 3.10726 3.46493 3.67356 3.70226 3.96940 4.04521 4.07192 4.16116 4.24015 4.34180 4.37461 4.39194 4.47185 4.50986 4.69880 4.70648 4.77151 4.79908 4.87167 4.93415 5.03565 5.05522 5.13181 5.18408 5.21470 5.28439 5.32664 5.34802 5.42803 5.46478 5.50429 5.58986 5.61256 5.71858 5.78260 6.17456 6.72908 6.81158 7.34707 8.89213 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037955 B = 0.003122 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.544304 B = 8966.564584 C = 9464.072329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C -0.068 4.068 4 H 0.064 0.936 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.070 4.070 10 H 0.124 0.876 11 C 0.454 3.546 12 O -0.534 6.534 13 O -0.358 6.358 14 C 0.078 3.922 15 C -0.093 4.093 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.005 1.005 43 H -0.004 1.004 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 8.582 21.022 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.087 4.087 4 H 0.082 0.918 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.089 4.089 10 H 0.142 0.858 11 C 0.299 3.701 12 O -0.423 6.423 13 O -0.274 6.274 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.288 8.356 20.615 26.438 hybrid contribution 0.744 -0.532 -1.207 1.515 sum -13.544 7.824 19.408 24.926 Atomic orbital electron populations 1.21735 0.94955 1.01559 1.01941 1.21880 0.96975 0.96502 1.02054 1.21016 0.90946 0.97314 0.99427 0.91795 1.21584 1.01405 0.99279 0.92308 1.21624 0.94999 1.01047 0.98342 1.21516 0.96369 1.01425 0.95570 1.21576 1.00814 0.99208 0.93390 1.21306 0.98179 1.01310 0.88091 0.85815 1.24668 0.80056 0.76478 0.88913 1.90595 1.51821 1.46880 1.53035 1.86494 1.28362 1.71651 1.40942 1.23080 0.97656 0.96289 0.82554 1.21446 0.91096 1.01594 0.98904 1.18933 0.95999 0.94394 0.91795 1.21623 0.92919 1.37922 1.05709 0.91623 1.26032 1.03682 0.94722 0.95523 1.70108 1.37192 1.39487 1.10637 0.85373 0.78813 0.79076 0.77345 1.19667 1.20780 1.18475 0.93692 0.93041 0.90966 0.93034 0.91057 0.90737 0.90341 0.90268 0.91845 0.90528 0.90648 0.91972 0.90934 0.92280 0.92218 0.91504 0.91482 0.98612 0.98589 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.14 -2.87 4.43 30.59 0.14 -2.73 16 3 C -0.07 -1.28 1.83 -10.79 -0.02 -1.30 16 4 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 5 C -0.11 -1.33 5.21 30.59 0.16 -1.17 16 6 C -0.12 -1.33 5.65 30.59 0.17 -1.16 16 7 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 8 C -0.11 -1.99 4.86 30.60 0.15 -1.84 16 9 C -0.07 -1.45 2.41 -11.54 -0.03 -1.47 16 10 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 11 C 0.45 13.81 6.93 71.23 0.49 14.31 16 12 O -0.53 -19.22 13.42 21.94 0.29 -18.93 16 13 O -0.36 -12.07 10.12 -51.38 -0.52 -12.59 16 14 C 0.08 3.00 5.47 71.98 0.39 3.39 16 15 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 21 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.97 6.57 -2.38 -0.02 0.95 16 28 H 0.05 1.46 5.42 -2.38 -0.01 1.45 16 29 H 0.07 1.34 4.83 -2.39 -0.01 1.33 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.85 6.57 -2.39 -0.02 0.83 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.76 6.32 -2.39 -0.02 0.74 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.20 6.54 -2.39 -0.02 1.18 16 37 H 0.07 1.37 8.11 -2.39 -0.02 1.36 16 38 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 39 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -66.72 339.48 6.38 -60.34 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.95 Total: 9.73 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.35 Total: -27.72 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.23 Total: -31.52 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.72 6.38 -60.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796335223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.717 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds