Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 111.00167 * 2 1 4 4 C 1.50701 * 109.46846 * 66.04543 * 3 2 1 5 5 O 1.21280 * 120.00132 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99590 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99946 * 179.97438 * 6 4 3 8 8 C 1.50692 * 109.47360 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37886 * 120.00325 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99674 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00329 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47486 * 89.99558 * 12 10 8 14 14 H 1.48501 * 109.47363 * 209.99727 * 12 10 8 15 15 H 1.48504 * 109.47158 * 329.99585 * 12 10 8 16 16 C 1.46898 * 111.00230 * 236.04918 * 2 1 3 17 17 H 1.08996 * 110.67587 * 63.26330 * 16 2 1 18 18 C 1.54894 * 110.75359 * 300.02595 * 16 2 1 19 19 C 1.54267 * 104.19484 * 203.55572 * 18 16 2 20 20 C 1.53868 * 106.60172 * 23.61416 * 19 18 16 21 21 C 1.52996 * 110.03528 * 119.27843 * 20 19 18 22 22 C 1.52995 * 110.03252 * 240.66654 * 20 19 18 23 23 C 1.54276 * 106.59644 * 359.97438 * 20 19 18 24 24 H 1.08997 * 109.46670 * 189.94472 * 1 2 3 25 25 H 1.09000 * 109.47108 * 309.94474 * 1 2 3 26 26 H 1.09002 * 109.47006 * 69.94992 * 1 2 3 27 27 H 1.08990 * 109.47230 * 186.04636 * 3 2 1 28 28 H 1.09007 * 109.46772 * 306.05006 * 3 2 1 29 29 H 0.96998 * 120.00638 * 359.97438 * 6 4 3 30 30 H 1.09003 * 109.47135 * 300.00143 * 7 6 4 31 31 H 1.09000 * 109.46953 * 59.99983 * 7 6 4 32 32 H 0.96999 * 120.00002 * 179.97438 * 11 10 8 33 33 H 1.09003 * 110.48262 * 84.88579 * 18 16 2 34 34 H 1.08997 * 110.60185 * 322.29568 * 18 16 2 35 35 H 1.09001 * 110.03537 * 264.32345 * 19 18 16 36 36 H 1.09001 * 110.02985 * 142.89813 * 19 18 16 37 37 H 1.09005 * 109.47179 * 61.45602 * 21 20 19 38 38 H 1.09005 * 109.47222 * 301.45641 * 21 20 19 39 39 H 1.09002 * 109.47466 * 181.45418 * 21 20 19 40 40 H 1.09003 * 109.47018 * 297.90195 * 22 20 19 41 41 H 1.08995 * 109.47304 * 57.90548 * 22 20 19 42 42 H 1.09008 * 109.47458 * 177.90627 * 22 20 19 43 43 H 1.09002 * 110.48347 * 95.06803 * 23 20 19 44 44 H 1.08994 * 110.48753 * 217.70844 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0180 3.3201 1.5233 7 6 1.6690 3.9772 2.7853 8 6 2.2092 5.3840 2.7854 9 1 2.7573 5.7521 1.9307 10 6 2.0037 6.2014 3.8767 11 7 1.3359 5.7534 4.9173 12 14 2.6727 7.9454 3.8765 13 1 1.6553 8.8659 3.3082 14 1 2.9879 8.3549 5.2687 15 1 3.9068 8.0022 3.0524 16 6 1.9955 -0.7659 -1.1376 17 1 1.7051 -0.3029 -2.0806 18 6 1.5156 -2.2374 -1.0778 19 6 2.5679 -3.0121 -1.8977 20 6 3.8521 -2.1649 -1.8772 21 6 4.9892 -2.9523 -1.2231 22 6 4.2416 -1.7690 -3.3028 23 6 3.5352 -0.9044 -1.0460 24 1 -0.3632 -1.0122 0.1775 25 1 -0.3633 0.6598 0.7879 26 1 -0.3633 0.3523 -0.9654 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9274 -0.8309 29 1 2.5234 3.8014 0.8496 30 1 0.5847 4.0040 2.8933 31 1 2.1034 3.4216 3.6164 32 1 1.1917 6.3283 5.6851 33 1 0.5297 -2.3359 -1.5323 34 1 1.4969 -2.5931 -0.0476 35 1 2.2216 -3.1407 -2.9232 36 1 2.7547 -3.9844 -1.4417 37 1 5.1888 -3.8527 -1.8041 38 1 4.7020 -3.2306 -0.2090 39 1 5.8868 -2.3348 -1.1900 40 1 4.4508 -2.6666 -3.8848 41 1 3.4211 -1.2197 -3.7643 42 1 5.1305 -1.1387 -3.2749 43 1 3.8442 -1.0430 -0.0099 44 1 4.0236 -0.0305 -1.4770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796529553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -54.789881 kcal Electronic energy + Delta-G solvation = -20897.774192 eV Core-core repulsion = 17849.101828 eV Total energy + Delta-G solvation = -3048.672364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80811 -38.61692 -35.94408 -34.07180 -32.30733 -31.50254 -28.91078 -28.51228 -27.50221 -26.57358 -24.70246 -23.50830 -22.11979 -19.95193 -19.59670 -18.80851 -17.05341 -16.30759 -15.84743 -15.22381 -15.17050 -14.72716 -14.48374 -14.18108 -13.84603 -13.61934 -13.47463 -13.36205 -13.12525 -12.53521 -12.28836 -12.16347 -11.93364 -11.70819 -11.63305 -11.52147 -11.13901 -10.97602 -10.87357 -10.85566 -10.72791 -10.63946 -10.63079 -10.52243 -10.29072 -9.37653 -8.93600 -8.71091 -8.14016 -7.81420 -6.15158 -4.21925 3.24842 3.30915 3.33386 3.44500 3.72527 4.25384 4.32924 4.49246 4.49985 4.67815 5.05007 5.13629 5.17761 5.20806 5.28748 5.31256 5.38839 5.43918 5.47035 5.52593 5.61273 5.64656 5.69086 5.72143 5.79729 5.81171 5.86282 5.91044 5.93728 6.08236 6.18305 6.21498 6.30578 6.36109 7.07413 7.24944 7.36540 7.49445 7.55083 7.70366 7.99408 8.67657 8.81823 9.17451 9.44969 10.95077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.003354 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.227259 B = 8345.143408 C = 8798.213391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.514 5.514 3 C 0.034 3.966 4 C 0.499 3.501 5 O -0.539 6.539 6 N -0.716 5.716 7 C 0.251 3.749 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.078 3.922 17 H 0.044 0.956 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.069 4.069 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.109 4.109 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.015 0.985 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.389 0.611 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -15.102 -16.696 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.238 5.238 3 C -0.098 4.098 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.030 4.030 17 H 0.062 0.938 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.070 4.070 21 C -0.196 4.196 22 C -0.195 4.195 23 C -0.147 4.147 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.034 0.966 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.221 0.779 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.954 -15.694 -15.436 22.365 hybrid contribution 0.297 1.683 -1.012 1.986 sum 4.251 -14.011 -16.448 22.021 Atomic orbital electron populations 1.22514 0.86646 1.03067 1.00362 1.61706 1.08572 1.11857 1.41663 1.22028 1.01685 0.89811 0.96235 1.20316 0.80616 0.82353 0.88451 1.90628 1.40152 1.64310 1.46565 1.46455 1.55792 1.12524 1.21757 1.19069 0.96397 0.91451 0.80014 1.21237 1.36741 0.97233 1.02915 0.91943 1.24957 0.94983 0.98970 0.95144 1.69977 1.39588 1.36745 1.05980 0.86419 0.79228 0.83847 0.77430 1.20497 1.21006 1.19746 1.22659 0.95057 0.94038 0.91277 0.93782 1.22365 0.97825 0.93854 1.01132 1.22250 0.94387 0.98521 1.00005 1.21127 0.95262 0.95296 0.95291 1.21908 0.97717 0.99431 1.00510 1.21921 1.01163 1.01005 0.95453 1.22560 0.94533 0.96694 1.00935 0.91589 0.89259 0.96645 0.88417 0.92732 0.77892 0.95679 0.95558 0.92465 0.92080 0.90357 0.91954 0.91611 0.92935 0.92350 0.92724 0.92857 0.92734 0.92705 0.90097 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.90 60.06 0.53 0.85 16 2 N -0.51 -7.52 4.40 -233.94 -1.03 -8.54 16 3 C 0.03 0.50 5.33 -4.97 -0.03 0.48 16 4 C 0.50 10.09 7.46 -10.99 -0.08 10.01 16 5 O -0.54 -13.06 14.39 5.56 0.08 -12.98 16 6 N -0.72 -15.21 5.55 -61.47 -0.34 -15.56 16 7 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 8 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 9 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 12 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 C 0.08 0.89 2.56 -65.73 -0.17 0.73 16 17 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.11 -1.16 5.22 -25.07 -0.13 -1.29 16 19 C -0.11 -0.97 6.11 -25.62 -0.16 -1.13 16 20 C -0.07 -0.60 0.94 -153.39 -0.14 -0.75 16 21 C -0.14 -1.13 8.15 37.16 0.30 -0.83 16 22 C -0.14 -1.06 8.14 37.15 0.30 -0.76 16 23 C -0.11 -1.15 4.39 -25.08 -0.11 -1.26 16 24 H 0.07 0.87 7.34 -51.93 -0.38 0.49 16 25 H 0.09 1.58 5.79 -51.93 -0.30 1.28 16 26 H 0.02 0.20 8.12 -51.93 -0.42 -0.23 16 27 H 0.10 1.29 6.69 -51.93 -0.35 0.94 16 28 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 29 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 36 H 0.07 0.53 7.67 -51.93 -0.40 0.14 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 44 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -31.44 346.29 -8.46 -39.91 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.98 Total: 2.31 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.12 Total: -0.73 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.63 Total: -49.64 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.44 -8.46 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.882 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds