Wall clock time and date at job start Mon Mar 30 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 111.00167 * 2 1 4 4 C 1.50701 * 109.46846 * 66.04543 * 3 2 1 5 5 O 1.21280 * 120.00132 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99590 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99946 * 179.97438 * 6 4 3 8 8 C 1.50692 * 109.47360 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37886 * 120.00325 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99674 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00329 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47486 * 89.99558 * 12 10 8 14 14 H 1.48501 * 109.47363 * 209.99727 * 12 10 8 15 15 H 1.48504 * 109.47158 * 329.99585 * 12 10 8 16 16 C 1.46898 * 111.00230 * 236.04918 * 2 1 3 17 17 H 1.08996 * 110.67587 * 63.26330 * 16 2 1 18 18 C 1.54894 * 110.75359 * 300.02595 * 16 2 1 19 19 C 1.54267 * 104.19484 * 203.55572 * 18 16 2 20 20 C 1.53868 * 106.60172 * 23.61416 * 19 18 16 21 21 C 1.52996 * 110.03528 * 119.27843 * 20 19 18 22 22 C 1.52995 * 110.03252 * 240.66654 * 20 19 18 23 23 C 1.54276 * 106.59644 * 359.97438 * 20 19 18 24 24 H 1.08997 * 109.46670 * 189.94472 * 1 2 3 25 25 H 1.09000 * 109.47108 * 309.94474 * 1 2 3 26 26 H 1.09002 * 109.47006 * 69.94992 * 1 2 3 27 27 H 1.08990 * 109.47230 * 186.04636 * 3 2 1 28 28 H 1.09007 * 109.46772 * 306.05006 * 3 2 1 29 29 H 0.96998 * 120.00638 * 359.97438 * 6 4 3 30 30 H 1.09003 * 109.47135 * 300.00143 * 7 6 4 31 31 H 1.09000 * 109.46953 * 59.99983 * 7 6 4 32 32 H 0.96999 * 120.00002 * 179.97438 * 11 10 8 33 33 H 1.09003 * 110.48262 * 84.88579 * 18 16 2 34 34 H 1.08997 * 110.60185 * 322.29568 * 18 16 2 35 35 H 1.09001 * 110.03537 * 264.32345 * 19 18 16 36 36 H 1.09001 * 110.02985 * 142.89813 * 19 18 16 37 37 H 1.09005 * 109.47179 * 61.45602 * 21 20 19 38 38 H 1.09005 * 109.47222 * 301.45641 * 21 20 19 39 39 H 1.09002 * 109.47466 * 181.45418 * 21 20 19 40 40 H 1.09003 * 109.47018 * 297.90195 * 22 20 19 41 41 H 1.08995 * 109.47304 * 57.90548 * 22 20 19 42 42 H 1.09008 * 109.47458 * 177.90627 * 22 20 19 43 43 H 1.09002 * 110.48347 * 95.06803 * 23 20 19 44 44 H 1.08994 * 110.48753 * 217.70844 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0180 3.3201 1.5233 7 6 1.6690 3.9772 2.7853 8 6 2.2092 5.3840 2.7854 9 1 2.7573 5.7521 1.9307 10 6 2.0037 6.2014 3.8767 11 7 1.3359 5.7534 4.9173 12 14 2.6727 7.9454 3.8765 13 1 1.6553 8.8659 3.3082 14 1 2.9879 8.3549 5.2687 15 1 3.9068 8.0022 3.0524 16 6 1.9955 -0.7659 -1.1376 17 1 1.7051 -0.3029 -2.0806 18 6 1.5156 -2.2374 -1.0778 19 6 2.5679 -3.0121 -1.8977 20 6 3.8521 -2.1649 -1.8772 21 6 4.9892 -2.9523 -1.2231 22 6 4.2416 -1.7690 -3.3028 23 6 3.5352 -0.9044 -1.0460 24 1 -0.3632 -1.0122 0.1775 25 1 -0.3633 0.6598 0.7879 26 1 -0.3633 0.3523 -0.9654 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9274 -0.8309 29 1 2.5234 3.8014 0.8496 30 1 0.5847 4.0040 2.8933 31 1 2.1034 3.4216 3.6164 32 1 1.1917 6.3283 5.6851 33 1 0.5297 -2.3359 -1.5323 34 1 1.4969 -2.5931 -0.0476 35 1 2.2216 -3.1407 -2.9232 36 1 2.7547 -3.9844 -1.4417 37 1 5.1888 -3.8527 -1.8041 38 1 4.7020 -3.2306 -0.2090 39 1 5.8868 -2.3348 -1.1900 40 1 4.4508 -2.6666 -3.8848 41 1 3.4211 -1.2197 -3.7643 42 1 5.1305 -1.1387 -3.2749 43 1 3.8442 -1.0430 -0.0099 44 1 4.0236 -0.0305 -1.4770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796529553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:36 Heat of formation + Delta-G solvation = -76.341584 kcal Electronic energy + Delta-G solvation = -20898.708744 eV Core-core repulsion = 17849.101828 eV Total energy + Delta-G solvation = -3049.606916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95644 -39.95471 -37.08597 -36.00738 -34.34005 -32.35618 -30.22283 -29.69930 -28.25849 -28.09319 -25.71627 -24.88941 -23.71039 -21.36520 -20.82792 -19.58538 -18.85158 -17.62438 -17.30975 -16.90712 -16.38789 -16.10262 -16.01446 -15.30953 -15.02961 -14.64361 -14.45593 -14.27714 -14.16294 -14.06578 -13.89433 -13.72450 -13.00319 -12.89344 -12.78325 -12.76281 -12.62999 -12.36274 -12.23114 -12.17579 -11.71478 -11.58297 -11.48175 -11.35933 -11.34360 -11.24857 -10.79734 -10.61296 -9.79639 -9.23716 -8.28983 -6.45724 1.43052 1.45625 1.56917 1.80856 2.27820 2.47125 3.05776 3.08638 3.55465 3.74233 3.90865 4.02247 4.21685 4.33721 4.35297 4.39705 4.45425 4.54466 4.57360 4.60181 4.66946 4.79663 4.89150 4.94444 5.03279 5.07507 5.09516 5.11687 5.17127 5.19028 5.24814 5.24963 5.38715 5.44439 5.49083 5.50241 5.63131 5.71100 5.85465 5.98661 6.23735 6.65680 6.96254 7.23969 7.54514 8.83304 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.003354 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.227259 B = 8345.143408 C = 8798.213391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.536 5.536 3 C 0.049 3.951 4 C 0.494 3.506 5 O -0.584 6.584 6 N -0.710 5.710 7 C 0.269 3.731 8 C -0.556 4.556 9 H 0.084 0.916 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.986 3.014 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.255 1.255 16 C 0.079 3.921 17 H 0.058 0.942 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.109 4.109 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.407 0.593 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.269 0.731 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -14.696 -19.586 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.260 5.260 3 C -0.082 4.082 4 C 0.281 3.719 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.146 3.854 8 C -0.594 4.594 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.809 3.191 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.178 1.178 16 C -0.029 4.029 17 H 0.076 0.924 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.067 4.067 21 C -0.195 4.195 22 C -0.193 4.193 23 C -0.147 4.147 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.139 0.861 28 H 0.100 0.900 29 H 0.243 0.757 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.450 -15.306 -18.384 24.534 hybrid contribution -0.201 1.459 -0.090 1.476 sum 5.250 -13.847 -18.474 23.677 Atomic orbital electron populations 1.22377 0.86971 1.02743 0.99926 1.61663 1.08564 1.11847 1.43960 1.21923 1.03175 0.89974 0.93103 1.21354 0.79040 0.81594 0.89908 1.90613 1.41925 1.65216 1.48690 1.46193 1.56305 1.13215 1.20422 1.18492 0.93622 0.91914 0.81379 1.21631 1.36767 0.97190 1.03781 0.89772 1.26090 0.94972 1.04152 0.94489 1.70144 1.41097 1.38839 1.06949 0.85144 0.79091 0.77316 0.77588 1.19587 1.20994 1.17825 1.22751 0.95576 0.94119 0.90410 0.92448 1.22351 0.98927 0.93325 1.00482 1.22236 0.93691 0.98338 1.00424 1.21121 0.95433 0.94414 0.95779 1.21899 0.97588 0.99930 1.00089 1.21895 1.01293 1.01547 0.94518 1.22564 0.93855 0.98122 1.00182 0.90738 0.93082 0.94669 0.86067 0.90013 0.75713 0.99651 0.99712 0.92267 0.91276 0.92260 0.90584 0.91261 0.91734 0.93436 0.92657 0.91865 0.92536 0.92524 0.92179 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.90 127.69 1.14 1.93 16 2 N -0.54 -15.16 4.40 -894.06 -3.93 -19.09 16 3 C 0.05 1.39 5.33 85.56 0.46 1.85 16 4 C 0.49 20.31 7.46 87.66 0.65 20.96 16 5 O -0.58 -29.69 14.39 -3.03 -0.04 -29.74 16 6 N -0.71 -30.55 5.55 -466.80 -2.59 -33.14 16 7 C 0.27 15.03 5.43 85.63 0.46 15.50 16 8 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 9 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 10 C 0.00 0.14 5.46 84.66 0.46 0.60 16 11 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 12 Si 0.99 42.53 29.54 68.60 2.03 44.56 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 16 C 0.08 1.64 2.56 46.20 0.12 1.76 16 17 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 18 C -0.11 -2.12 5.22 31.67 0.17 -1.96 16 19 C -0.11 -1.61 6.11 31.32 0.19 -1.41 16 20 C -0.07 -1.01 0.94 -51.46 -0.05 -1.05 16 21 C -0.14 -2.02 8.15 71.98 0.59 -1.43 16 22 C -0.14 -1.65 8.14 71.98 0.59 -1.06 16 23 C -0.11 -2.08 4.39 31.66 0.14 -1.94 16 24 H 0.07 1.96 7.34 -2.39 -0.02 1.94 16 25 H 0.05 1.87 5.79 -2.39 -0.01 1.86 16 26 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.12 2.89 6.69 -2.39 -0.02 2.88 16 28 H 0.08 1.93 8.12 -2.38 -0.02 1.91 16 29 H 0.41 14.32 8.32 -92.71 -0.77 13.55 16 30 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 36 H 0.07 0.98 7.67 -2.39 -0.02 0.97 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 44 H 0.07 1.24 7.43 -2.39 -0.02 1.22 16 Total: -1.00 -71.13 346.29 1.08 -70.05 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.18 Total: 20.50 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.15 Total: 3.43 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -6.24 Total: -108.81 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.04 Total: -29.74 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.13 1.08 -70.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.293 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds