Wall clock time and date at job start Mon Mar 30 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00044 * 2 1 4 4 C 1.50707 * 109.47022 * 66.04397 * 3 2 1 5 5 O 1.21286 * 119.99513 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00247 * 179.97438 * 4 3 2 7 7 C 1.46492 * 120.00172 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47408 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99412 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99861 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47416 * 60.00078 * 12 10 8 14 14 H 1.48499 * 109.47080 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47207 * 300.00094 * 12 10 8 16 16 C 1.46902 * 111.00145 * 236.05076 * 2 1 3 17 17 H 1.09002 * 110.67330 * 64.65186 * 16 2 1 18 18 C 1.54890 * 110.75618 * 187.89076 * 16 2 1 19 19 C 1.54265 * 104.19669 * 156.44095 * 18 16 2 20 20 C 1.53872 * 106.59766 * 336.38751 * 19 18 16 21 21 C 1.53001 * 110.03424 * 119.28718 * 20 19 18 22 22 C 1.53003 * 110.03063 * 240.71792 * 20 19 18 23 23 C 1.54757 * 106.65180 * 0.02562 * 20 19 18 24 24 H 1.09001 * 109.47299 * 183.95009 * 1 2 3 25 25 H 1.08998 * 109.47522 * 303.95257 * 1 2 3 26 26 H 1.09009 * 109.47201 * 63.95146 * 1 2 3 27 27 H 1.09000 * 109.47343 * 186.04539 * 3 2 1 28 28 H 1.08998 * 109.47053 * 306.05042 * 3 2 1 29 29 H 0.96999 * 119.99794 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47069 * 300.00246 * 7 6 4 31 31 H 1.08996 * 109.47365 * 59.99903 * 7 6 4 32 32 H 0.97003 * 120.00073 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.48480 * 275.11725 * 18 16 2 34 34 H 1.08999 * 110.48784 * 37.75648 * 18 16 2 35 35 H 1.08995 * 110.03379 * 95.67248 * 19 18 16 36 36 H 1.09005 * 110.03127 * 217.05460 * 19 18 16 37 37 H 1.09000 * 109.46924 * 61.45419 * 21 20 19 38 38 H 1.09002 * 109.46978 * 181.45346 * 21 20 19 39 39 H 1.08998 * 109.46554 * 301.45275 * 21 20 19 40 40 H 1.08999 * 109.47468 * 58.54705 * 22 20 19 41 41 H 1.08997 * 109.46965 * 178.54638 * 22 20 19 42 42 H 1.09002 * 109.47277 * 298.54286 * 22 20 19 43 43 H 1.08998 * 110.50261 * 265.01092 * 23 20 19 44 44 H 1.09001 * 110.68900 * 142.21812 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2985 5 8 1.0053 1.4452 2.1411 6 7 2.0187 3.3199 1.5238 7 6 1.6706 3.9765 2.7862 8 6 2.2106 5.3835 2.7863 9 1 2.7586 5.7515 1.9316 10 6 2.0049 6.2008 3.8775 11 7 1.3380 5.7524 4.9185 12 14 2.6748 7.9445 3.8778 13 1 2.0837 8.7021 2.7457 14 1 2.3218 8.6101 5.1575 15 1 4.1520 7.9073 3.7308 16 6 1.9954 -0.7659 -1.1377 17 1 1.7257 -0.2894 -2.0802 18 6 3.5315 -0.9299 -1.0252 19 6 3.8403 -2.1868 -1.8645 20 6 2.5433 -3.0135 -1.9114 21 6 2.0751 -3.1725 -3.3593 22 6 2.7750 -4.3883 -1.2810 23 6 1.4872 -2.2283 -1.0972 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.5241 3.8011 0.8501 30 1 0.5864 4.0038 2.8947 31 1 2.1049 3.4203 3.6169 32 1 1.1936 6.3273 5.6864 33 1 4.0395 -0.0595 -1.4406 34 1 3.8237 -1.0835 0.0136 35 1 4.1361 -1.8989 -2.8732 36 1 4.6354 -2.7646 -1.3931 37 1 2.8353 -3.7055 -3.9305 38 1 1.1429 -3.7370 -3.3798 39 1 1.9138 -2.1883 -3.7990 40 1 3.1086 -4.2640 -0.2507 41 1 1.8448 -4.9561 -1.2956 42 1 3.5367 -4.9241 -1.8474 43 1 1.4504 -2.5907 -0.0699 44 1 0.5057 -2.3044 -1.5650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796529554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:40 Heat of formation + Delta-G solvation = -54.688933 kcal Electronic energy + Delta-G solvation = -20840.024993 eV Core-core repulsion = 17791.357007 eV Total energy + Delta-G solvation = -3048.667986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79178 -38.61363 -35.93212 -34.07177 -32.30301 -31.47678 -29.38115 -27.83929 -27.50806 -26.71593 -25.06502 -23.13038 -22.20858 -20.00417 -19.55065 -18.81611 -17.09763 -16.30506 -15.83225 -15.18871 -15.18330 -14.76279 -14.46416 -14.12915 -13.78714 -13.66541 -13.51153 -13.40343 -13.14578 -12.53714 -12.23354 -12.21090 -11.92479 -11.79846 -11.70618 -11.41488 -11.04503 -10.98992 -10.87356 -10.81941 -10.78126 -10.69844 -10.61410 -10.52142 -10.29003 -9.39021 -8.93727 -8.70707 -8.13563 -7.81160 -6.14903 -4.21841 3.25997 3.30738 3.32222 3.44549 3.72008 4.28069 4.32960 4.45810 4.50237 4.67053 5.04044 5.12781 5.17856 5.20912 5.28898 5.29227 5.37074 5.43537 5.45311 5.56984 5.59390 5.64601 5.68541 5.72640 5.75605 5.79169 5.88221 5.89727 5.94196 6.06108 6.17683 6.21388 6.29753 6.38056 7.07337 7.25161 7.36554 7.49584 7.55214 7.70333 7.99593 8.67668 8.81801 9.17608 9.45046 10.95288 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044899 B = 0.003128 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.469530 B = 8949.922334 C = 9183.541012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.514 5.514 3 C 0.034 3.966 4 C 0.499 3.501 5 O -0.539 6.539 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.077 3.923 17 H 0.044 0.956 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.070 4.070 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.389 0.611 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -15.878 -16.708 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.238 5.238 3 C -0.097 4.097 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.031 4.031 17 H 0.062 0.938 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.071 4.071 21 C -0.195 4.195 22 C -0.195 4.195 23 C -0.142 4.142 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.033 0.967 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.221 0.779 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.763 -16.470 -15.444 22.747 hybrid contribution 0.313 1.691 -1.027 2.003 sum 3.077 -14.778 -16.471 22.342 Atomic orbital electron populations 1.22548 0.86680 1.02428 1.01140 1.61722 1.08568 1.11878 1.41611 1.22031 1.01685 0.89770 0.96245 1.20320 0.80610 0.82347 0.88443 1.90623 1.40168 1.64287 1.46593 1.46451 1.55789 1.12556 1.21728 1.19061 0.96408 0.91427 0.79994 1.21201 1.36823 0.97250 1.02926 0.91996 1.24951 0.94961 0.98960 0.95147 1.69966 1.39527 1.36865 1.05948 0.86479 0.79357 0.83665 0.77425 1.20099 1.21070 1.20066 1.22666 0.95091 0.94030 0.91322 0.93798 1.22422 0.94659 0.97316 1.01222 1.22236 0.96829 0.96085 0.99978 1.21230 0.95237 0.95350 0.95240 1.21914 1.00808 1.01471 0.95311 1.21901 1.01267 0.95691 1.00670 1.22591 0.97349 0.93474 1.00813 0.91630 0.89031 0.96666 0.88413 0.92727 0.77894 0.95681 0.95569 0.92402 0.91937 0.90255 0.91911 0.91572 0.92832 0.92818 0.92724 0.92333 0.92833 0.92907 0.90192 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.83 16 2 N -0.51 -7.51 4.39 -233.94 -1.03 -8.54 16 3 C 0.03 0.51 5.34 -4.97 -0.03 0.48 16 4 C 0.50 10.10 7.52 -10.98 -0.08 10.01 16 5 O -0.54 -13.06 14.33 5.55 0.08 -12.98 16 6 N -0.72 -15.22 5.55 -61.48 -0.34 -15.56 16 7 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 8 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 9 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 12 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.08 0.88 2.57 -65.73 -0.17 0.72 16 17 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.12 -1.23 5.37 -25.07 -0.13 -1.37 16 19 C -0.11 -0.98 6.11 -25.61 -0.16 -1.14 16 20 C -0.07 -0.60 0.94 -153.13 -0.14 -0.74 16 21 C -0.14 -1.03 8.15 37.16 0.30 -0.73 16 22 C -0.14 -1.09 8.16 37.16 0.30 -0.79 16 23 C -0.10 -1.07 4.21 -24.82 -0.10 -1.17 16 24 H 0.06 0.85 6.99 -51.93 -0.36 0.49 16 25 H 0.09 1.63 5.82 -51.93 -0.30 1.33 16 26 H 0.01 0.20 8.14 -51.92 -0.42 -0.23 16 27 H 0.10 1.28 6.73 -51.93 -0.35 0.93 16 28 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.06 0.60 7.72 -51.93 -0.40 0.20 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 36 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 44 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -31.44 345.98 -8.44 -39.88 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.97 Total: 2.31 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.12 Total: -0.69 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.63 Total: -49.67 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.44 -8.44 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.806 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds