Wall clock time and date at job start Mon Mar 30 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00044 * 2 1 4 4 C 1.50707 * 109.47022 * 66.04397 * 3 2 1 5 5 O 1.21286 * 119.99513 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00247 * 179.97438 * 4 3 2 7 7 C 1.46492 * 120.00172 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47408 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99412 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99861 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47416 * 60.00078 * 12 10 8 14 14 H 1.48499 * 109.47080 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47207 * 300.00094 * 12 10 8 16 16 C 1.46902 * 111.00145 * 236.05076 * 2 1 3 17 17 H 1.09002 * 110.67330 * 64.65186 * 16 2 1 18 18 C 1.54890 * 110.75618 * 187.89076 * 16 2 1 19 19 C 1.54265 * 104.19669 * 156.44095 * 18 16 2 20 20 C 1.53872 * 106.59766 * 336.38751 * 19 18 16 21 21 C 1.53001 * 110.03424 * 119.28718 * 20 19 18 22 22 C 1.53003 * 110.03063 * 240.71792 * 20 19 18 23 23 C 1.54757 * 106.65180 * 0.02562 * 20 19 18 24 24 H 1.09001 * 109.47299 * 183.95009 * 1 2 3 25 25 H 1.08998 * 109.47522 * 303.95257 * 1 2 3 26 26 H 1.09009 * 109.47201 * 63.95146 * 1 2 3 27 27 H 1.09000 * 109.47343 * 186.04539 * 3 2 1 28 28 H 1.08998 * 109.47053 * 306.05042 * 3 2 1 29 29 H 0.96999 * 119.99794 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47069 * 300.00246 * 7 6 4 31 31 H 1.08996 * 109.47365 * 59.99903 * 7 6 4 32 32 H 0.97003 * 120.00073 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.48480 * 275.11725 * 18 16 2 34 34 H 1.08999 * 110.48784 * 37.75648 * 18 16 2 35 35 H 1.08995 * 110.03379 * 95.67248 * 19 18 16 36 36 H 1.09005 * 110.03127 * 217.05460 * 19 18 16 37 37 H 1.09000 * 109.46924 * 61.45419 * 21 20 19 38 38 H 1.09002 * 109.46978 * 181.45346 * 21 20 19 39 39 H 1.08998 * 109.46554 * 301.45275 * 21 20 19 40 40 H 1.08999 * 109.47468 * 58.54705 * 22 20 19 41 41 H 1.08997 * 109.46965 * 178.54638 * 22 20 19 42 42 H 1.09002 * 109.47277 * 298.54286 * 22 20 19 43 43 H 1.08998 * 110.50261 * 265.01092 * 23 20 19 44 44 H 1.09001 * 110.68900 * 142.21812 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2985 5 8 1.0053 1.4452 2.1411 6 7 2.0187 3.3199 1.5238 7 6 1.6706 3.9765 2.7862 8 6 2.2106 5.3835 2.7863 9 1 2.7586 5.7515 1.9316 10 6 2.0049 6.2008 3.8775 11 7 1.3380 5.7524 4.9185 12 14 2.6748 7.9445 3.8778 13 1 2.0837 8.7021 2.7457 14 1 2.3218 8.6101 5.1575 15 1 4.1520 7.9073 3.7308 16 6 1.9954 -0.7659 -1.1377 17 1 1.7257 -0.2894 -2.0802 18 6 3.5315 -0.9299 -1.0252 19 6 3.8403 -2.1868 -1.8645 20 6 2.5433 -3.0135 -1.9114 21 6 2.0751 -3.1725 -3.3593 22 6 2.7750 -4.3883 -1.2810 23 6 1.4872 -2.2283 -1.0972 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3634 0.5739 0.8524 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5610 1.9274 -0.8309 29 1 2.5241 3.8011 0.8501 30 1 0.5864 4.0038 2.8947 31 1 2.1049 3.4203 3.6169 32 1 1.1936 6.3273 5.6864 33 1 4.0395 -0.0595 -1.4406 34 1 3.8237 -1.0835 0.0136 35 1 4.1361 -1.8989 -2.8732 36 1 4.6354 -2.7646 -1.3931 37 1 2.8353 -3.7055 -3.9305 38 1 1.1429 -3.7370 -3.3798 39 1 1.9138 -2.1883 -3.7990 40 1 3.1086 -4.2640 -0.2507 41 1 1.8448 -4.9561 -1.2956 42 1 3.5367 -4.9241 -1.8474 43 1 1.4504 -2.5907 -0.0699 44 1 0.5057 -2.3044 -1.5650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796529554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:39 Heat of formation + Delta-G solvation = -76.252901 kcal Electronic energy + Delta-G solvation = -20840.960077 eV Core-core repulsion = 17791.357007 eV Total energy + Delta-G solvation = -3049.603070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94260 -39.94575 -37.07356 -36.00639 -34.33986 -32.28442 -30.68907 -29.19636 -28.19851 -28.07556 -26.23447 -24.52376 -23.69383 -21.43197 -20.79326 -19.55546 -18.90217 -17.63228 -17.31820 -16.89062 -16.40678 -16.05597 -16.00067 -15.30251 -15.03750 -14.65683 -14.45076 -14.26366 -14.14819 -14.06879 -13.91335 -13.74207 -13.00963 -12.91078 -12.81391 -12.78588 -12.62300 -12.34124 -12.23864 -12.08244 -11.70631 -11.60656 -11.50715 -11.40251 -11.33654 -11.23761 -10.78678 -10.60382 -9.79694 -9.23495 -8.28835 -6.45762 1.42870 1.47185 1.55365 1.81031 2.27779 2.47142 3.05784 3.09224 3.56205 3.73177 3.90881 4.02413 4.23517 4.31757 4.34432 4.38042 4.45384 4.56214 4.57301 4.61828 4.66373 4.78338 4.88122 4.94672 5.02576 5.07162 5.10126 5.11997 5.17120 5.19029 5.23680 5.24957 5.39637 5.43515 5.48427 5.50161 5.62781 5.71295 5.85474 5.98685 6.23789 6.65472 6.96482 7.23971 7.54862 8.83245 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044899 B = 0.003128 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.469530 B = 8949.922334 C = 9183.541012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.536 5.536 3 C 0.049 3.951 4 C 0.494 3.506 5 O -0.584 6.584 6 N -0.710 5.710 7 C 0.269 3.731 8 C -0.557 4.557 9 H 0.084 0.916 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.261 1.261 14 H -0.286 1.286 15 H -0.262 1.262 16 C 0.078 3.922 17 H 0.057 0.943 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.068 4.068 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.103 4.103 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.407 0.593 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.269 0.731 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -15.453 -19.606 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.260 5.260 3 C -0.082 4.082 4 C 0.281 3.719 5 O -0.465 6.465 6 N -0.361 5.361 7 C 0.146 3.854 8 C -0.595 4.595 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.186 1.186 14 H -0.211 1.211 15 H -0.186 1.186 16 C -0.029 4.029 17 H 0.075 0.925 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.068 4.068 21 C -0.192 4.192 22 C -0.194 4.194 23 C -0.141 4.141 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.243 0.757 30 H 0.003 0.997 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.305 -16.063 -18.401 24.802 hybrid contribution -0.201 1.459 -0.104 1.477 sum 4.104 -14.604 -18.504 23.927 Atomic orbital electron populations 1.22405 0.87052 1.02582 1.00176 1.61672 1.08523 1.11891 1.43921 1.21934 1.03242 0.89906 0.93090 1.21367 0.79040 0.81589 0.89915 1.90610 1.41933 1.65196 1.48722 1.46189 1.56307 1.13250 1.20389 1.18482 0.93617 0.91890 0.81368 1.21604 1.36846 0.97211 1.03816 0.89769 1.26086 0.94943 1.04158 0.94485 1.70137 1.41063 1.38932 1.06906 0.85201 0.79117 0.77199 0.77662 1.18598 1.21122 1.18604 1.22760 0.95692 0.94042 0.90441 0.92475 1.22424 0.93926 0.98789 1.00495 1.22227 0.96904 0.95211 1.00367 1.21225 0.94590 0.95236 0.95765 1.21888 1.01236 1.01745 0.94341 1.21890 1.01737 0.95629 1.00191 1.22578 0.98338 0.93067 1.00125 0.90540 0.92944 0.94929 0.85951 0.90013 0.75701 0.99674 0.99737 0.92254 0.90759 0.92294 0.90509 0.91293 0.91813 0.92605 0.92621 0.93406 0.92630 0.91745 0.92151 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 8.96 127.69 1.14 1.89 16 2 N -0.54 -15.15 4.39 -894.04 -3.93 -19.08 16 3 C 0.05 1.39 5.34 85.56 0.46 1.84 16 4 C 0.49 20.29 7.52 87.66 0.66 20.95 16 5 O -0.58 -29.71 14.33 -3.05 -0.04 -29.75 16 6 N -0.71 -30.53 5.55 -466.80 -2.59 -33.12 16 7 C 0.27 15.07 5.43 85.64 0.46 15.53 16 8 C -0.56 -30.62 9.28 25.60 0.24 -30.38 16 9 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 10 C 0.00 0.16 5.46 84.66 0.46 0.62 16 11 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 12 Si 0.99 42.52 29.54 68.60 2.03 44.55 16 13 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 14 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 16 C 0.08 1.63 2.57 46.20 0.12 1.74 16 17 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 18 C -0.12 -2.22 5.37 31.67 0.17 -2.05 16 19 C -0.11 -1.61 6.11 31.32 0.19 -1.42 16 20 C -0.07 -1.01 0.94 -51.29 -0.05 -1.06 16 21 C -0.13 -1.63 8.15 71.98 0.59 -1.05 16 22 C -0.14 -1.95 8.16 71.98 0.59 -1.37 16 23 C -0.10 -1.96 4.21 31.83 0.13 -1.83 16 24 H 0.08 1.98 6.99 -2.39 -0.02 1.96 16 25 H 0.05 1.94 5.82 -2.39 -0.01 1.93 16 26 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.12 2.89 6.73 -2.39 -0.02 2.87 16 28 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 29 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 30 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.07 1.21 7.72 -2.38 -0.02 1.19 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 36 H 0.07 0.99 7.67 -2.38 -0.02 0.97 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 1.39 7.86 -2.39 -0.02 1.37 16 44 H 0.07 1.21 7.68 -2.39 -0.02 1.19 16 Total: -1.00 -71.21 345.98 1.10 -70.11 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.18 Total: 20.50 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.16 Total: 3.43 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -6.23 Total: -108.85 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.04 Total: -29.75 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.21 1.10 -70.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796529554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds