Wall clock time and date at job start Mon Mar 30 2020 00:39:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47075 * 2 1
4 4 C 1.52997 * 109.47075 * 179.97438 * 3 2 1
5 5 C 1.53004 * 109.47441 * 300.00181 * 4 3 2
6 6 C 1.53001 * 109.47168 * 60.00189 * 4 3 2
7 7 C 1.52998 * 109.46960 * 60.00028 * 6 4 3
8 8 C 1.50705 * 109.47099 * 180.02562 * 4 3 2
9 9 O 1.20821 * 119.99793 * 5.00277 * 8 4 3
10 10 O 1.34227 * 120.00053 * 185.00566 * 8 4 3
11 11 C 1.45197 * 117.00282 * 185.11047 * 10 8 4
12 12 C 1.52995 * 109.47499 * 184.87481 * 11 10 8
13 13 C 1.50703 * 115.54933 * 295.95651 * 12 11 10
14 14 H 1.07999 * 119.99755 * 95.19372 * 13 12 11
15 15 C 1.37873 * 120.00102 * 274.92293 * 13 12 11
16 16 N 1.31516 * 120.00219 * 355.42295 * 15 13 12
17 17 Si 1.86804 * 119.99832 * 175.41756 * 15 13 12
18 18 H 1.48502 * 109.46718 * 60.00382 * 17 15 13
19 19 H 1.48506 * 109.46934 * 179.97438 * 17 15 13
20 20 H 1.48498 * 109.47633 * 300.00185 * 17 15 13
21 21 C 1.52993 * 117.50108 * 81.62887 * 12 11 10
22 22 C 1.53002 * 117.49991 * 150.29244 * 12 11 10
23 23 H 1.09002 * 109.47058 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.47092 * 299.99544 * 1 2 3
25 25 H 1.08999 * 109.47096 * 59.99990 * 1 2 3
26 26 H 1.09002 * 109.47113 * 239.99931 * 2 1 3
27 27 H 1.08993 * 109.47437 * 120.00319 * 2 1 3
28 28 H 1.08998 * 109.46788 * 60.00269 * 3 2 1
29 29 H 1.08999 * 109.47167 * 299.99967 * 3 2 1
30 30 H 1.08999 * 109.47058 * 305.43591 * 5 4 3
31 31 H 1.08996 * 109.46707 * 65.43116 * 5 4 3
32 32 H 1.08997 * 109.46714 * 185.43379 * 5 4 3
33 33 H 1.09002 * 109.47346 * 179.97438 * 6 4 3
34 34 H 1.09002 * 109.47138 * 299.99960 * 6 4 3
35 35 H 1.08997 * 109.47635 * 59.99745 * 7 6 4
36 36 H 1.09000 * 109.47480 * 180.02562 * 7 6 4
37 37 H 1.08999 * 109.47213 * 299.99890 * 7 6 4
38 38 H 1.09001 * 109.47003 * 64.86659 * 11 10 8
39 39 H 1.09009 * 109.46735 * 304.87370 * 11 10 8
40 40 H 0.96996 * 120.00246 * 184.99972 * 16 15 13
41 41 H 1.08999 * 117.50080 * 215.00182 * 21 12 11
42 42 H 1.09002 * 117.50023 * 0.02562 * 21 12 11
43 43 H 1.09001 * 117.50106 * 359.97314 * 22 12 11
44 44 H 1.09003 * 117.49901 * 144.97430 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5699 1.4425 0.0006
5 6 4.0795 0.7214 1.2502
6 6 4.0805 0.7211 -1.2483
7 6 3.5710 1.4422 -2.4978
8 6 4.0723 2.8634 0.0013
9 8 3.2908 3.7803 0.0925
10 8 5.3878 3.1102 -0.0995
11 6 5.8102 4.4940 0.0223
12 6 7.3144 4.5930 -0.2387
13 6 8.1946 3.8759 0.7524
14 1 8.5387 2.8739 0.5427
15 6 8.5651 4.5010 1.9241
16 7 8.2260 5.7537 2.1367
17 14 9.5485 3.5684 3.2096
18 1 10.8356 3.1207 2.6194
19 1 9.8185 4.4580 4.3677
20 1 8.7740 2.3855 3.6635
21 6 7.7776 4.6317 -1.6963
22 6 7.8431 5.8976 -0.8382
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 1.6766 1.9563 0.8900
29 1 1.6766 1.9563 -0.8900
30 1 3.6385 1.1760 2.1373
31 1 3.7978 -0.3304 1.2028
32 1 5.1651 0.8050 1.3005
33 1 5.1705 0.7215 -1.2481
34 1 3.7171 -0.3066 -1.2483
35 1 3.9342 2.4699 -2.4978
36 1 3.9343 0.9281 -3.3876
37 1 2.4810 1.4422 -2.4983
38 1 5.5913 4.8535 1.0277
39 1 5.2742 5.1029 -0.7060
40 1 8.5474 6.2158 2.9267
41 1 8.7189 4.1383 -1.9386
42 1 7.0106 4.5869 -2.4695
43 1 7.1191 6.6852 -1.0472
44 1 8.8273 6.2373 -0.5157
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000796733848.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:51
Heat of formation + Delta-G solvation = -94.228936 kcal
Electronic energy + Delta-G solvation = -21764.536001 eV
Core-core repulsion = 18681.860680 eV
Total energy + Delta-G solvation = -3082.675321 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.30153 -37.61686 -36.43989 -35.16233 -33.00099 -31.93767 -30.42014 -27.07489
-26.57561 -25.32560 -23.97603 -23.02685 -21.27696 -20.92701 -19.24846 -18.50914
-16.72042 -16.31684 -15.92226 -15.55055 -15.36746 -14.63430 -14.31385 -13.92038
-13.74654 -13.27533 -13.19143 -13.00422 -12.59055 -12.09299 -12.01653 -11.92500
-11.74727 -11.69756 -11.58179 -11.17393 -10.94655 -10.92546 -10.87551 -10.80514
-10.54709 -10.39017 -10.30112 -10.24760 -9.82632 -9.78814 -9.39666 -8.89520
-8.44071 -8.18389 -6.04075 -4.11261 2.81962 3.29859 3.35108 3.36678
3.38241 4.39150 4.66391 4.80365 4.86172 5.04633 5.08957 5.20237
5.24115 5.35234 5.41963 5.50659 5.63285 5.68701 5.69996 5.74233
5.83104 5.92172 5.96986 5.99987 6.04519 6.09401 6.17660 6.23458
6.27293 6.27796 6.34667 6.39228 6.51443 6.54957 6.70661 6.76936
7.06605 7.26506 7.38864 7.53974 7.87411 8.37992 8.51061 8.89960
9.54243 11.03727
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.022067 B = 0.005338 C = 0.004816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1268.583752 B = 5244.072547 C = 5812.182805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.126 4.126
3 C -0.101 4.101
4 C -0.051 4.051
5 C -0.144 4.144
6 C -0.113 4.113
7 C -0.157 4.157
8 C 0.464 3.536
9 O -0.526 6.526
10 O -0.332 6.332
11 C 0.115 3.885
12 C 0.036 3.964
13 C -0.487 4.487
14 H 0.062 0.938
15 C 0.069 3.931
16 N -0.883 5.883
17 Si 0.892 3.108
18 H -0.276 1.276
19 H -0.287 1.287
20 H -0.275 1.275
21 C -0.206 4.206
22 C -0.140 4.140
23 H 0.052 0.948
24 H 0.053 0.947
25 H 0.053 0.947
26 H 0.066 0.934
27 H 0.066 0.934
28 H 0.069 0.931
29 H 0.071 0.929
30 H 0.059 0.941
31 H 0.069 0.931
32 H 0.075 0.925
33 H 0.080 0.920
34 H 0.074 0.926
35 H 0.053 0.947
36 H 0.057 0.943
37 H 0.057 0.943
38 H 0.069 0.931
39 H 0.039 0.961
40 H 0.262 0.738
41 H 0.080 0.920
42 H 0.064 0.936
43 H 0.063 0.937
44 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.530 -10.521 -5.034 15.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.164 4.164
3 C -0.138 4.138
4 C -0.052 4.052
5 C -0.201 4.201
6 C -0.151 4.151
7 C -0.214 4.214
8 C 0.307 3.693
9 O -0.416 6.416
10 O -0.247 6.247
11 C 0.042 3.958
12 C 0.035 3.965
13 C -0.524 4.524
14 H 0.080 0.920
15 C -0.134 4.134
16 N -0.520 5.520
17 Si 0.719 3.281
18 H -0.202 1.202
19 H -0.213 1.213
20 H -0.201 1.201
21 C -0.243 4.243
22 C -0.178 4.178
23 H 0.071 0.929
24 H 0.072 0.928
25 H 0.072 0.928
26 H 0.085 0.915
27 H 0.084 0.916
28 H 0.088 0.912
29 H 0.090 0.910
30 H 0.078 0.922
31 H 0.088 0.912
32 H 0.094 0.906
33 H 0.099 0.901
34 H 0.093 0.907
35 H 0.072 0.928
36 H 0.076 0.924
37 H 0.076 0.924
38 H 0.087 0.913
39 H 0.057 0.943
40 H 0.071 0.929
41 H 0.099 0.901
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -10.749 -10.071 -4.844 15.505
hybrid contribution 0.497 -0.050 0.815 0.956
sum -10.251 -10.121 -4.029 14.959
Atomic orbital electron populations
1.21761 0.95953 1.01291 1.01881 1.21649 0.95676 0.96641 1.02395
1.21559 0.91881 0.96920 1.03486 1.20551 0.96401 0.89833 0.98441
1.21902 1.02938 0.99992 0.95298 1.21628 1.02203 0.98949 0.92272
1.21871 1.01150 1.00893 0.97514 1.23486 0.81861 0.91774 0.72209
1.90585 1.57489 1.47046 1.46507 1.86530 1.23617 1.33712 1.80867
1.22866 0.95773 0.76525 1.00658 1.18767 0.89009 0.97960 0.90751
1.20342 1.29998 1.00754 1.01344 0.91987 1.25009 0.95699 0.94957
0.97775 1.69977 1.44244 1.09750 1.28022 0.86663 0.80428 0.79872
0.81100 1.20195 1.21302 1.20078 1.22997 1.01790 1.04197 0.95334
1.22516 1.02029 0.90243 1.02967 0.92913 0.92763 0.92826 0.91544
0.91566 0.91201 0.91019 0.92203 0.91228 0.90596 0.90110 0.90706
0.92771 0.92368 0.92426 0.91259 0.94275 0.92871 0.90139 0.91728
0.91857 0.89144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16
2 C -0.13 -1.22 5.23 -26.73 -0.14 -1.36 16
3 C -0.10 -1.28 3.22 -26.73 -0.09 -1.37 16
4 C -0.05 -0.74 0.52 -155.66 -0.08 -0.82 16
5 C -0.14 -1.93 7.94 37.16 0.29 -1.64 16
6 C -0.11 -1.43 4.54 -26.73 -0.12 -1.55 16
7 C -0.16 -1.96 9.31 37.16 0.35 -1.61 16
8 C 0.46 9.00 5.29 36.01 0.19 9.19 16
9 O -0.53 -11.41 15.64 -18.75 -0.29 -11.71 16
10 O -0.33 -7.30 9.84 -39.25 -0.39 -7.69 16
11 C 0.12 2.77 5.38 37.16 0.20 2.97 16
12 C 0.04 0.89 1.70 -155.66 -0.26 0.63 16
13 C -0.49 -13.23 8.76 -34.44 -0.30 -13.53 16
14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16
15 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16
16 N -0.88 -24.91 12.65 55.43 0.70 -24.21 16
17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16
18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
21 C -0.21 -4.54 9.96 -26.70 -0.27 -4.81 16
22 C -0.14 -3.30 9.15 -26.69 -0.24 -3.55 16
23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
26 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16
27 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16
28 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16
29 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16
30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.07 0.73 6.73 -51.93 -0.35 0.38 16
32 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16
33 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16
34 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16
35 H 0.05 0.81 7.22 -51.93 -0.37 0.43 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
37 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16
38 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16
39 H 0.04 0.90 7.93 -51.92 -0.41 0.49 16
40 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16
41 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16
42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16
44 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16
LS Contribution 351.21 15.07 5.29 5.29
Total: -1.00 -29.35 351.21 -7.75 -37.10
By element:
Atomic # 1 Polarization: 9.68 SS G_CDS: -7.84 Total: 1.84 kcal
Atomic # 6 Polarization: -16.43 SS G_CDS: -0.20 Total: -16.63 kcal
Atomic # 7 Polarization: -24.91 SS G_CDS: 0.70 Total: -24.21 kcal
Atomic # 8 Polarization: -18.72 SS G_CDS: -0.68 Total: -19.40 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -29.35 -7.75 -37.10 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000796733848.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.131 kcal
(2) G-P(sol) polarization free energy of solvation -29.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.480 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.229 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds