Wall clock time and date at job start Mon Mar 30 2020 00:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.52997 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47441 * 300.00181 * 4 3 2 6 6 C 1.53001 * 109.47168 * 60.00189 * 4 3 2 7 7 C 1.52998 * 109.46960 * 60.00028 * 6 4 3 8 8 C 1.50705 * 109.47099 * 180.02562 * 4 3 2 9 9 O 1.20821 * 119.99793 * 5.00277 * 8 4 3 10 10 O 1.34227 * 120.00053 * 185.00566 * 8 4 3 11 11 C 1.45197 * 117.00282 * 185.11047 * 10 8 4 12 12 C 1.52995 * 109.47499 * 184.87481 * 11 10 8 13 13 C 1.50703 * 115.54933 * 295.95651 * 12 11 10 14 14 H 1.07999 * 119.99755 * 95.19372 * 13 12 11 15 15 C 1.37873 * 120.00102 * 274.92293 * 13 12 11 16 16 N 1.31516 * 120.00219 * 355.42295 * 15 13 12 17 17 Si 1.86804 * 119.99832 * 175.41756 * 15 13 12 18 18 H 1.48502 * 109.46718 * 60.00382 * 17 15 13 19 19 H 1.48506 * 109.46934 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47633 * 300.00185 * 17 15 13 21 21 C 1.52993 * 117.50108 * 81.62887 * 12 11 10 22 22 C 1.53002 * 117.49991 * 150.29244 * 12 11 10 23 23 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47092 * 299.99544 * 1 2 3 25 25 H 1.08999 * 109.47096 * 59.99990 * 1 2 3 26 26 H 1.09002 * 109.47113 * 239.99931 * 2 1 3 27 27 H 1.08993 * 109.47437 * 120.00319 * 2 1 3 28 28 H 1.08998 * 109.46788 * 60.00269 * 3 2 1 29 29 H 1.08999 * 109.47167 * 299.99967 * 3 2 1 30 30 H 1.08999 * 109.47058 * 305.43591 * 5 4 3 31 31 H 1.08996 * 109.46707 * 65.43116 * 5 4 3 32 32 H 1.08997 * 109.46714 * 185.43379 * 5 4 3 33 33 H 1.09002 * 109.47346 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47138 * 299.99960 * 6 4 3 35 35 H 1.08997 * 109.47635 * 59.99745 * 7 6 4 36 36 H 1.09000 * 109.47480 * 180.02562 * 7 6 4 37 37 H 1.08999 * 109.47213 * 299.99890 * 7 6 4 38 38 H 1.09001 * 109.47003 * 64.86659 * 11 10 8 39 39 H 1.09009 * 109.46735 * 304.87370 * 11 10 8 40 40 H 0.96996 * 120.00246 * 184.99972 * 16 15 13 41 41 H 1.08999 * 117.50080 * 215.00182 * 21 12 11 42 42 H 1.09002 * 117.50023 * 0.02562 * 21 12 11 43 43 H 1.09001 * 117.50106 * 359.97314 * 22 12 11 44 44 H 1.09003 * 117.49901 * 144.97430 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 6 4.0805 0.7211 -1.2483 7 6 3.5710 1.4422 -2.4978 8 6 4.0723 2.8634 0.0013 9 8 3.2908 3.7803 0.0925 10 8 5.3878 3.1102 -0.0995 11 6 5.8102 4.4940 0.0223 12 6 7.3144 4.5930 -0.2387 13 6 8.1946 3.8759 0.7524 14 1 8.5387 2.8739 0.5427 15 6 8.5651 4.5010 1.9241 16 7 8.2260 5.7537 2.1367 17 14 9.5485 3.5684 3.2096 18 1 10.8356 3.1207 2.6194 19 1 9.8185 4.4580 4.3677 20 1 8.7740 2.3855 3.6635 21 6 7.7776 4.6317 -1.6963 22 6 7.8431 5.8976 -0.8382 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6385 1.1760 2.1373 31 1 3.7978 -0.3304 1.2028 32 1 5.1651 0.8050 1.3005 33 1 5.1705 0.7215 -1.2481 34 1 3.7171 -0.3066 -1.2483 35 1 3.9342 2.4699 -2.4978 36 1 3.9343 0.9281 -3.3876 37 1 2.4810 1.4422 -2.4983 38 1 5.5913 4.8535 1.0277 39 1 5.2742 5.1029 -0.7060 40 1 8.5474 6.2158 2.9267 41 1 8.7189 4.1383 -1.9386 42 1 7.0106 4.5869 -2.4695 43 1 7.1191 6.6852 -1.0472 44 1 8.8273 6.2373 -0.5157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796733848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:51 Heat of formation + Delta-G solvation = -94.228936 kcal Electronic energy + Delta-G solvation = -21764.536001 eV Core-core repulsion = 18681.860680 eV Total energy + Delta-G solvation = -3082.675321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30153 -37.61686 -36.43989 -35.16233 -33.00099 -31.93767 -30.42014 -27.07489 -26.57561 -25.32560 -23.97603 -23.02685 -21.27696 -20.92701 -19.24846 -18.50914 -16.72042 -16.31684 -15.92226 -15.55055 -15.36746 -14.63430 -14.31385 -13.92038 -13.74654 -13.27533 -13.19143 -13.00422 -12.59055 -12.09299 -12.01653 -11.92500 -11.74727 -11.69756 -11.58179 -11.17393 -10.94655 -10.92546 -10.87551 -10.80514 -10.54709 -10.39017 -10.30112 -10.24760 -9.82632 -9.78814 -9.39666 -8.89520 -8.44071 -8.18389 -6.04075 -4.11261 2.81962 3.29859 3.35108 3.36678 3.38241 4.39150 4.66391 4.80365 4.86172 5.04633 5.08957 5.20237 5.24115 5.35234 5.41963 5.50659 5.63285 5.68701 5.69996 5.74233 5.83104 5.92172 5.96986 5.99987 6.04519 6.09401 6.17660 6.23458 6.27293 6.27796 6.34667 6.39228 6.51443 6.54957 6.70661 6.76936 7.06605 7.26506 7.38864 7.53974 7.87411 8.37992 8.51061 8.89960 9.54243 11.03727 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.005338 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.583752 B = 5244.072547 C = 5812.182805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.051 4.051 5 C -0.144 4.144 6 C -0.113 4.113 7 C -0.157 4.157 8 C 0.464 3.536 9 O -0.526 6.526 10 O -0.332 6.332 11 C 0.115 3.885 12 C 0.036 3.964 13 C -0.487 4.487 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.883 5.883 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.206 4.206 22 C -0.140 4.140 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -10.521 -5.034 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.052 4.052 5 C -0.201 4.201 6 C -0.151 4.151 7 C -0.214 4.214 8 C 0.307 3.693 9 O -0.416 6.416 10 O -0.247 6.247 11 C 0.042 3.958 12 C 0.035 3.965 13 C -0.524 4.524 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.520 5.520 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.178 4.178 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.749 -10.071 -4.844 15.505 hybrid contribution 0.497 -0.050 0.815 0.956 sum -10.251 -10.121 -4.029 14.959 Atomic orbital electron populations 1.21761 0.95953 1.01291 1.01881 1.21649 0.95676 0.96641 1.02395 1.21559 0.91881 0.96920 1.03486 1.20551 0.96401 0.89833 0.98441 1.21902 1.02938 0.99992 0.95298 1.21628 1.02203 0.98949 0.92272 1.21871 1.01150 1.00893 0.97514 1.23486 0.81861 0.91774 0.72209 1.90585 1.57489 1.47046 1.46507 1.86530 1.23617 1.33712 1.80867 1.22866 0.95773 0.76525 1.00658 1.18767 0.89009 0.97960 0.90751 1.20342 1.29998 1.00754 1.01344 0.91987 1.25009 0.95699 0.94957 0.97775 1.69977 1.44244 1.09750 1.28022 0.86663 0.80428 0.79872 0.81100 1.20195 1.21302 1.20078 1.22997 1.01790 1.04197 0.95334 1.22516 1.02029 0.90243 1.02967 0.92913 0.92763 0.92826 0.91544 0.91566 0.91201 0.91019 0.92203 0.91228 0.90596 0.90110 0.90706 0.92771 0.92368 0.92426 0.91259 0.94275 0.92871 0.90139 0.91728 0.91857 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.22 5.23 -26.73 -0.14 -1.36 16 3 C -0.10 -1.28 3.22 -26.73 -0.09 -1.37 16 4 C -0.05 -0.74 0.52 -155.66 -0.08 -0.82 16 5 C -0.14 -1.93 7.94 37.16 0.29 -1.64 16 6 C -0.11 -1.43 4.54 -26.73 -0.12 -1.55 16 7 C -0.16 -1.96 9.31 37.16 0.35 -1.61 16 8 C 0.46 9.00 5.29 36.01 0.19 9.19 16 9 O -0.53 -11.41 15.64 -18.75 -0.29 -11.71 16 10 O -0.33 -7.30 9.84 -39.25 -0.39 -7.69 16 11 C 0.12 2.77 5.38 37.16 0.20 2.97 16 12 C 0.04 0.89 1.70 -155.66 -0.26 0.63 16 13 C -0.49 -13.23 8.76 -34.44 -0.30 -13.53 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 16 N -0.88 -24.91 12.65 55.43 0.70 -24.21 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.21 -4.54 9.96 -26.70 -0.27 -4.81 16 22 C -0.14 -3.30 9.15 -26.69 -0.24 -3.55 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 27 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16 28 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 29 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.73 6.73 -51.93 -0.35 0.38 16 32 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 33 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 34 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 35 H 0.05 0.81 7.22 -51.93 -0.37 0.43 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 38 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.04 0.90 7.93 -51.92 -0.41 0.49 16 40 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -29.35 351.21 -7.75 -37.10 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.84 Total: 1.84 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.20 Total: -16.63 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.70 Total: -24.21 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.68 Total: -19.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.35 -7.75 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796733848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.131 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds