Wall clock time and date at job start Mon Mar 30 2020 00:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.52997 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47441 * 300.00181 * 4 3 2 6 6 C 1.53001 * 109.47168 * 60.00189 * 4 3 2 7 7 C 1.52998 * 109.46960 * 60.00028 * 6 4 3 8 8 C 1.50705 * 109.47099 * 180.02562 * 4 3 2 9 9 O 1.20821 * 119.99793 * 5.00277 * 8 4 3 10 10 O 1.34227 * 120.00053 * 185.00566 * 8 4 3 11 11 C 1.45197 * 117.00282 * 185.11047 * 10 8 4 12 12 C 1.52995 * 109.47499 * 184.87481 * 11 10 8 13 13 C 1.50703 * 115.54933 * 295.95651 * 12 11 10 14 14 H 1.07999 * 119.99755 * 95.19372 * 13 12 11 15 15 C 1.37873 * 120.00102 * 274.92293 * 13 12 11 16 16 N 1.31516 * 120.00219 * 355.42295 * 15 13 12 17 17 Si 1.86804 * 119.99832 * 175.41756 * 15 13 12 18 18 H 1.48502 * 109.46718 * 60.00382 * 17 15 13 19 19 H 1.48506 * 109.46934 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47633 * 300.00185 * 17 15 13 21 21 C 1.52993 * 117.50108 * 81.62887 * 12 11 10 22 22 C 1.53002 * 117.49991 * 150.29244 * 12 11 10 23 23 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47092 * 299.99544 * 1 2 3 25 25 H 1.08999 * 109.47096 * 59.99990 * 1 2 3 26 26 H 1.09002 * 109.47113 * 239.99931 * 2 1 3 27 27 H 1.08993 * 109.47437 * 120.00319 * 2 1 3 28 28 H 1.08998 * 109.46788 * 60.00269 * 3 2 1 29 29 H 1.08999 * 109.47167 * 299.99967 * 3 2 1 30 30 H 1.08999 * 109.47058 * 305.43591 * 5 4 3 31 31 H 1.08996 * 109.46707 * 65.43116 * 5 4 3 32 32 H 1.08997 * 109.46714 * 185.43379 * 5 4 3 33 33 H 1.09002 * 109.47346 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47138 * 299.99960 * 6 4 3 35 35 H 1.08997 * 109.47635 * 59.99745 * 7 6 4 36 36 H 1.09000 * 109.47480 * 180.02562 * 7 6 4 37 37 H 1.08999 * 109.47213 * 299.99890 * 7 6 4 38 38 H 1.09001 * 109.47003 * 64.86659 * 11 10 8 39 39 H 1.09009 * 109.46735 * 304.87370 * 11 10 8 40 40 H 0.96996 * 120.00246 * 184.99972 * 16 15 13 41 41 H 1.08999 * 117.50080 * 215.00182 * 21 12 11 42 42 H 1.09002 * 117.50023 * 0.02562 * 21 12 11 43 43 H 1.09001 * 117.50106 * 359.97314 * 22 12 11 44 44 H 1.09003 * 117.49901 * 144.97430 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 6 4.0805 0.7211 -1.2483 7 6 3.5710 1.4422 -2.4978 8 6 4.0723 2.8634 0.0013 9 8 3.2908 3.7803 0.0925 10 8 5.3878 3.1102 -0.0995 11 6 5.8102 4.4940 0.0223 12 6 7.3144 4.5930 -0.2387 13 6 8.1946 3.8759 0.7524 14 1 8.5387 2.8739 0.5427 15 6 8.5651 4.5010 1.9241 16 7 8.2260 5.7537 2.1367 17 14 9.5485 3.5684 3.2096 18 1 10.8356 3.1207 2.6194 19 1 9.8185 4.4580 4.3677 20 1 8.7740 2.3855 3.6635 21 6 7.7776 4.6317 -1.6963 22 6 7.8431 5.8976 -0.8382 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6385 1.1760 2.1373 31 1 3.7978 -0.3304 1.2028 32 1 5.1651 0.8050 1.3005 33 1 5.1705 0.7215 -1.2481 34 1 3.7171 -0.3066 -1.2483 35 1 3.9342 2.4699 -2.4978 36 1 3.9343 0.9281 -3.3876 37 1 2.4810 1.4422 -2.4983 38 1 5.5913 4.8535 1.0277 39 1 5.2742 5.1029 -0.7060 40 1 8.5474 6.2158 2.9267 41 1 8.7189 4.1383 -1.9386 42 1 7.0106 4.5869 -2.4695 43 1 7.1191 6.6852 -1.0472 44 1 8.8273 6.2373 -0.5157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796733848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:50 Heat of formation + Delta-G solvation = -107.844877 kcal Electronic energy + Delta-G solvation = -21765.126432 eV Core-core repulsion = 18681.860680 eV Total energy + Delta-G solvation = -3083.265752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81472 -39.09141 -38.05399 -36.91066 -34.02374 -33.85110 -31.46026 -28.87452 -27.57636 -27.35251 -25.19952 -24.08135 -23.00313 -22.21198 -21.21138 -19.80895 -18.52812 -17.91387 -17.45938 -17.16532 -16.58485 -16.36374 -15.80440 -15.26464 -15.10855 -14.69286 -14.30696 -14.13943 -13.91051 -13.69196 -13.59878 -13.22556 -13.03229 -12.89843 -12.81693 -12.72689 -12.64046 -12.41916 -12.12956 -12.09583 -11.87059 -11.81354 -11.68576 -11.57300 -11.37879 -11.21369 -11.06345 -10.88173 -10.46593 -10.09433 -8.12190 -6.25496 1.25475 1.41727 1.43523 1.50758 1.83440 2.41693 3.14596 3.37913 3.58506 3.68526 3.79947 4.03692 4.10477 4.23187 4.29111 4.34455 4.40944 4.43023 4.53300 4.63147 4.67209 4.69207 4.75537 4.84254 4.85171 4.90547 4.94210 4.99687 5.11856 5.14530 5.16222 5.20360 5.22801 5.25070 5.41476 5.43347 5.45142 5.57573 5.59157 5.71785 5.76181 6.34853 6.79326 6.85197 7.43041 8.95119 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.005338 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.583752 B = 5244.072547 C = 5812.182805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.047 4.047 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.156 4.156 8 C 0.456 3.544 9 O -0.555 6.555 10 O -0.341 6.341 11 C 0.128 3.872 12 C 0.005 3.995 13 C -0.501 4.501 14 H 0.056 0.944 15 C 0.023 3.977 16 N -0.911 5.911 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.178 4.178 22 C -0.142 4.142 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.020 0.980 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.261 0.739 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -13.159 -5.692 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.048 4.048 5 C -0.200 4.200 6 C -0.147 4.147 7 C -0.213 4.213 8 C 0.301 3.699 9 O -0.446 6.446 10 O -0.256 6.256 11 C 0.054 3.946 12 C 0.004 3.996 13 C -0.539 4.539 14 H 0.074 0.926 15 C -0.177 4.177 16 N -0.549 5.549 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.215 4.215 22 C -0.180 4.180 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.039 0.961 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.331 -12.723 -5.514 17.907 hybrid contribution 0.619 0.784 0.993 1.408 sum -10.712 -11.940 -4.521 16.666 Atomic orbital electron populations 1.21765 0.95229 1.02325 1.01606 1.21644 0.96279 0.94129 1.03658 1.21554 0.90296 0.99207 1.02307 1.20787 0.97522 0.86388 1.00121 1.21938 1.01488 1.02152 0.94386 1.21676 1.01375 1.00602 0.91035 1.21879 1.01905 0.99111 0.98435 1.24708 0.80598 0.93881 0.70679 1.90560 1.57745 1.48567 1.47756 1.86545 1.25485 1.32255 1.81305 1.22465 0.95613 0.77904 0.98620 1.18866 0.89138 0.99111 0.92459 1.20584 1.30302 1.00689 1.02283 0.92571 1.25727 0.96824 0.95674 0.99521 1.70091 1.45282 1.11039 1.28514 0.85712 0.79337 0.78639 0.78626 1.19215 1.21096 1.19674 1.22992 1.02306 1.02118 0.94090 1.22431 1.01248 0.90691 1.03590 0.91184 0.93372 0.92916 0.89900 0.90535 0.92964 0.91786 0.92923 0.87293 0.92620 0.91541 0.86935 0.96068 0.90308 0.91248 0.94726 0.93901 0.92999 0.89535 0.89520 0.90857 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -1.91 5.23 30.59 0.16 -1.75 16 3 C -0.10 -2.30 3.22 30.59 0.10 -2.20 16 4 C -0.05 -1.31 0.52 -52.93 -0.03 -1.34 16 5 C -0.14 -3.61 7.94 71.98 0.57 -3.04 16 6 C -0.11 -2.51 4.54 30.59 0.14 -2.37 16 7 C -0.16 -3.60 9.31 71.98 0.67 -2.93 16 8 C 0.46 18.03 5.29 71.24 0.38 18.41 16 9 O -0.55 -24.86 15.64 21.98 0.34 -24.51 16 10 O -0.34 -15.33 9.84 -51.38 -0.51 -15.84 16 11 C 0.13 6.35 5.38 71.98 0.39 6.74 16 12 C 0.00 0.24 1.70 -52.93 -0.09 0.15 16 13 C -0.50 -27.60 8.76 25.60 0.22 -27.37 16 14 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 15 C 0.02 1.25 5.43 84.65 0.46 1.71 16 16 N -0.91 -52.54 12.65 21.45 0.27 -52.27 16 17 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.18 -7.72 9.96 30.62 0.30 -7.41 16 22 C -0.14 -6.76 9.15 30.62 0.28 -6.48 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 27 H 0.08 1.09 6.55 -2.39 -0.02 1.07 16 28 H 0.05 1.42 8.04 -2.39 -0.02 1.40 16 29 H 0.06 1.62 6.43 -2.39 -0.02 1.61 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.89 6.73 -2.39 -0.02 1.87 16 32 H 0.05 1.64 8.11 -2.39 -0.02 1.62 16 33 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 34 H 0.11 1.76 6.43 -2.39 -0.02 1.74 16 35 H 0.02 0.61 7.22 -2.39 -0.02 0.59 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.42 6.43 -2.39 -0.02 1.41 16 38 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 2.04 7.93 -2.38 -0.02 2.02 16 40 H 0.26 14.41 8.32 -92.71 -0.77 13.64 16 41 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.07 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -64.81 351.21 7.35 -57.46 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.95 Total: 19.16 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.27 Total: -29.39 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.27 Total: -52.27 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.16 Total: -40.35 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.81 7.35 -57.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796733848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.382 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds