Wall clock time and date at job start Mon Mar 30 2020 00:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46826 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47151 * 60.00346 * 4 3 2 6 6 C 1.53002 * 109.47494 * 299.99819 * 4 3 2 7 7 C 1.52995 * 109.47384 * 295.53475 * 6 4 3 8 8 C 1.50704 * 109.46982 * 180.02562 * 4 3 2 9 9 O 1.20826 * 120.00073 * 355.06935 * 8 4 3 10 10 O 1.34231 * 120.00116 * 175.07750 * 8 4 3 11 11 C 1.45197 * 117.00260 * 175.91153 * 10 8 4 12 12 C 1.52998 * 109.47409 * 184.34548 * 11 10 8 13 13 C 1.50695 * 115.54802 * 186.66168 * 12 11 10 14 14 H 1.08007 * 119.99534 * 144.42896 * 13 12 11 15 15 C 1.37868 * 120.00727 * 324.43158 * 13 12 11 16 16 N 1.31516 * 120.00696 * 167.85672 * 15 13 12 17 17 Si 1.86808 * 119.99661 * 347.85854 * 15 13 12 18 18 H 1.48494 * 109.46975 * 95.53453 * 17 15 13 19 19 H 1.48503 * 109.46956 * 215.53684 * 17 15 13 20 20 H 1.48499 * 109.47059 * 335.53381 * 17 15 13 21 21 C 1.52992 * 117.49818 * 40.99257 * 12 11 10 22 22 C 1.53004 * 117.49482 * 332.33318 * 12 11 10 23 23 H 1.09000 * 109.47932 * 300.00147 * 1 2 3 24 24 H 1.09002 * 109.47042 * 60.00599 * 1 2 3 25 25 H 1.09000 * 109.47125 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47426 * 239.99511 * 2 1 3 27 27 H 1.09001 * 109.46622 * 119.99729 * 2 1 3 28 28 H 1.09000 * 109.47040 * 59.99993 * 3 2 1 29 29 H 1.08996 * 109.47373 * 299.99836 * 3 2 1 30 30 H 1.08996 * 109.46879 * 55.75305 * 5 4 3 31 31 H 1.09003 * 109.47039 * 175.75661 * 5 4 3 32 32 H 1.09003 * 109.46968 * 295.75607 * 5 4 3 33 33 H 1.09002 * 109.46609 * 55.53043 * 6 4 3 34 34 H 1.08995 * 109.47200 * 175.53282 * 6 4 3 35 35 H 1.09001 * 109.47433 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.46874 * 299.99865 * 7 6 4 37 37 H 1.09004 * 109.47552 * 59.99393 * 7 6 4 38 38 H 1.09003 * 109.46915 * 304.34725 * 11 10 8 39 39 H 1.09000 * 109.47244 * 64.33941 * 11 10 8 40 40 H 0.97001 * 120.00076 * 180.02562 * 16 15 13 41 41 H 1.09001 * 117.49868 * 0.02562 * 21 12 11 42 42 H 1.08996 * 117.50009 * 145.02121 * 21 12 11 43 43 H 1.09001 * 117.49410 * 214.97830 * 22 12 11 44 44 H 1.08996 * 117.50004 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7211 -1.2483 6 6 4.0795 0.7214 1.2502 7 6 3.6629 1.5047 2.4966 8 6 4.0723 2.8633 0.0013 9 8 3.2909 3.7804 -0.0887 10 8 5.3879 3.1100 0.1017 11 6 5.8080 4.4964 0.0040 12 6 7.3360 4.5696 0.0314 13 6 7.9192 5.9576 0.0954 14 1 8.8209 6.1389 0.6616 15 6 7.3018 6.9961 -0.5688 16 7 7.6612 8.2378 -0.3266 17 14 5.9547 6.6395 -1.8129 18 1 4.6290 6.7565 -1.1541 19 1 6.0407 7.6153 -2.9290 20 1 6.1236 5.2633 -2.3445 21 6 8.1081 3.5149 -0.7637 22 6 8.0835 3.4546 0.7657 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6567 1.1890 -2.1368 31 1 5.1679 0.7864 -1.2867 32 1 3.7805 -0.3262 -1.2111 33 1 3.6522 -0.2805 1.2911 34 1 5.1665 0.6516 1.2115 35 1 4.0255 0.9908 3.3869 36 1 4.0901 2.5067 2.4557 37 1 2.5758 1.5747 2.5354 38 1 5.4406 4.9225 -0.9296 39 1 5.4021 5.0592 0.8446 40 1 7.2265 8.9685 -0.7936 41 1 7.5274 2.7691 -1.3067 42 1 9.0381 3.8248 -1.2402 43 1 8.9974 3.7250 1.2946 44 1 7.4867 2.6693 1.2295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796733852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:54 Heat of formation + Delta-G solvation = -79.080597 kcal Electronic energy + Delta-G solvation = -22019.434742 eV Core-core repulsion = 18937.416303 eV Total energy + Delta-G solvation = -3082.018439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60467 -37.97805 -36.70537 -35.27009 -33.15482 -32.28507 -30.58213 -27.84456 -26.78319 -25.53370 -24.03261 -23.20580 -21.42742 -21.27280 -19.17003 -18.84682 -17.02911 -16.82112 -16.18564 -15.90993 -15.52126 -14.82312 -14.52827 -14.08683 -13.92493 -13.51810 -13.16691 -13.07527 -13.02134 -12.56646 -12.29770 -12.25148 -11.94179 -11.86728 -11.74132 -11.31536 -11.13371 -11.06924 -10.98235 -10.74585 -10.59926 -10.47889 -10.43648 -10.41580 -9.98892 -9.69479 -9.48851 -9.24509 -8.72097 -8.34525 -6.26892 -4.20816 2.56730 3.05833 3.23642 3.30763 3.34478 4.26775 4.47821 4.62515 4.68683 4.72382 4.91126 4.94485 5.08855 5.24813 5.30697 5.35129 5.48337 5.51907 5.53979 5.61000 5.68397 5.73203 5.75358 5.81266 5.85135 5.89182 5.96568 5.99564 6.02684 6.10626 6.14395 6.19479 6.23890 6.36951 6.53099 6.60254 6.75396 6.97207 7.04748 7.22320 7.61533 8.16293 8.39893 8.78344 9.36092 10.85193 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.005641 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.273791 B = 4962.499491 C = 5405.829201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.052 4.052 5 C -0.144 4.144 6 C -0.112 4.112 7 C -0.160 4.160 8 C 0.463 3.537 9 O -0.514 6.514 10 O -0.348 6.348 11 C 0.085 3.915 12 C 0.005 3.995 13 C -0.483 4.483 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.883 5.883 17 Si 0.871 3.129 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.259 1.259 21 C -0.199 4.199 22 C -0.177 4.177 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 -17.926 0.822 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.053 4.053 5 C -0.201 4.201 6 C -0.150 4.150 7 C -0.217 4.217 8 C 0.306 3.694 9 O -0.403 6.403 10 O -0.264 6.264 11 C 0.012 3.988 12 C 0.004 3.996 13 C -0.520 4.520 14 H 0.104 0.896 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.185 1.185 21 C -0.237 4.237 22 C -0.214 4.214 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.850 -17.380 0.772 20.503 hybrid contribution -0.752 0.233 -0.736 1.078 sum -11.602 -17.147 0.036 20.703 Atomic orbital electron populations 1.21762 0.95797 1.01401 1.01980 1.21654 0.95849 0.96413 1.02385 1.21572 0.91538 0.97162 1.03717 1.20603 0.96752 0.89352 0.98569 1.21909 1.02425 1.00385 0.95385 1.21640 1.02106 0.98945 0.92286 1.21891 1.01564 1.00746 0.97500 1.23550 0.81450 0.92046 0.72378 1.90642 1.57152 1.46958 1.45527 1.86449 1.24734 1.33262 1.81909 1.23526 0.96400 0.77134 1.01695 1.19361 0.86456 0.92437 1.01354 1.20306 1.11738 0.87867 1.32094 0.89639 1.24978 0.96520 0.94808 0.96167 1.69897 1.42621 0.98594 1.40800 0.87190 0.82518 0.77818 0.82373 1.19928 1.21700 1.18549 1.23088 1.03200 1.04161 0.93282 1.22725 1.02269 1.02050 0.94383 0.92725 0.92742 0.92810 0.91573 0.91457 0.90853 0.91091 0.92135 0.91021 0.90870 0.90435 0.90357 0.92114 0.92556 0.92365 0.91802 0.90812 0.92139 0.91104 0.89780 0.90065 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.08 5.24 -26.73 -0.14 -1.22 16 3 C -0.10 -1.20 3.32 -26.73 -0.09 -1.29 16 4 C -0.05 -0.67 0.52 -155.66 -0.08 -0.75 16 5 C -0.14 -1.62 7.97 37.16 0.30 -1.33 16 6 C -0.11 -1.25 4.63 -26.73 -0.12 -1.37 16 7 C -0.16 -1.89 9.35 37.15 0.35 -1.54 16 8 C 0.46 8.47 5.08 36.01 0.18 8.65 16 9 O -0.51 -11.02 15.72 -18.75 -0.29 -11.31 16 10 O -0.35 -6.95 8.31 -39.26 -0.33 -7.27 16 11 C 0.08 1.99 4.09 37.16 0.15 2.14 16 12 C 0.00 0.12 1.84 -155.67 -0.29 -0.17 16 13 C -0.48 -13.58 9.57 -34.45 -0.33 -13.91 16 14 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 15 C 0.08 2.28 5.42 -17.82 -0.10 2.19 16 16 N -0.88 -26.61 13.96 55.43 0.77 -25.84 16 17 Si 0.87 22.29 24.22 -169.99 -4.12 18.17 16 18 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.26 -6.44 6.35 56.52 0.36 -6.08 16 21 C -0.20 -4.28 9.67 -26.70 -0.26 -4.54 16 22 C -0.18 -3.68 9.63 -26.69 -0.26 -3.94 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 27 H 0.07 0.53 6.33 -51.93 -0.33 0.20 16 28 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 29 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.07 0.62 6.67 -51.93 -0.35 0.28 16 33 H 0.08 0.67 6.20 -51.93 -0.32 0.35 16 34 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.82 7.09 -51.92 -0.37 0.45 16 37 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 38 H 0.06 1.60 2.63 -51.93 -0.14 1.46 16 39 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 42 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.08 1.51 7.45 -51.93 -0.39 1.13 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -30.84 338.68 -6.74 -37.58 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.56 Total: 1.51 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -0.32 Total: -17.93 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.62 Total: -18.59 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.12 Total: 18.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.84 -6.74 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796733852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.505 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds