Wall clock time and date at job start Mon Mar 30 2020 00:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46826 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47151 * 60.00346 * 4 3 2 6 6 C 1.53002 * 109.47494 * 299.99819 * 4 3 2 7 7 C 1.52995 * 109.47384 * 295.53475 * 6 4 3 8 8 C 1.50704 * 109.46982 * 180.02562 * 4 3 2 9 9 O 1.20826 * 120.00073 * 355.06935 * 8 4 3 10 10 O 1.34231 * 120.00116 * 175.07750 * 8 4 3 11 11 C 1.45197 * 117.00260 * 175.91153 * 10 8 4 12 12 C 1.52998 * 109.47409 * 184.34548 * 11 10 8 13 13 C 1.50695 * 115.54802 * 186.66168 * 12 11 10 14 14 H 1.08007 * 119.99534 * 144.42896 * 13 12 11 15 15 C 1.37868 * 120.00727 * 324.43158 * 13 12 11 16 16 N 1.31516 * 120.00696 * 167.85672 * 15 13 12 17 17 Si 1.86808 * 119.99661 * 347.85854 * 15 13 12 18 18 H 1.48494 * 109.46975 * 95.53453 * 17 15 13 19 19 H 1.48503 * 109.46956 * 215.53684 * 17 15 13 20 20 H 1.48499 * 109.47059 * 335.53381 * 17 15 13 21 21 C 1.52992 * 117.49818 * 40.99257 * 12 11 10 22 22 C 1.53004 * 117.49482 * 332.33318 * 12 11 10 23 23 H 1.09000 * 109.47932 * 300.00147 * 1 2 3 24 24 H 1.09002 * 109.47042 * 60.00599 * 1 2 3 25 25 H 1.09000 * 109.47125 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47426 * 239.99511 * 2 1 3 27 27 H 1.09001 * 109.46622 * 119.99729 * 2 1 3 28 28 H 1.09000 * 109.47040 * 59.99993 * 3 2 1 29 29 H 1.08996 * 109.47373 * 299.99836 * 3 2 1 30 30 H 1.08996 * 109.46879 * 55.75305 * 5 4 3 31 31 H 1.09003 * 109.47039 * 175.75661 * 5 4 3 32 32 H 1.09003 * 109.46968 * 295.75607 * 5 4 3 33 33 H 1.09002 * 109.46609 * 55.53043 * 6 4 3 34 34 H 1.08995 * 109.47200 * 175.53282 * 6 4 3 35 35 H 1.09001 * 109.47433 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.46874 * 299.99865 * 7 6 4 37 37 H 1.09004 * 109.47552 * 59.99393 * 7 6 4 38 38 H 1.09003 * 109.46915 * 304.34725 * 11 10 8 39 39 H 1.09000 * 109.47244 * 64.33941 * 11 10 8 40 40 H 0.97001 * 120.00076 * 180.02562 * 16 15 13 41 41 H 1.09001 * 117.49868 * 0.02562 * 21 12 11 42 42 H 1.08996 * 117.50009 * 145.02121 * 21 12 11 43 43 H 1.09001 * 117.49410 * 214.97830 * 22 12 11 44 44 H 1.08996 * 117.50004 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7211 -1.2483 6 6 4.0795 0.7214 1.2502 7 6 3.6629 1.5047 2.4966 8 6 4.0723 2.8633 0.0013 9 8 3.2909 3.7804 -0.0887 10 8 5.3879 3.1100 0.1017 11 6 5.8080 4.4964 0.0040 12 6 7.3360 4.5696 0.0314 13 6 7.9192 5.9576 0.0954 14 1 8.8209 6.1389 0.6616 15 6 7.3018 6.9961 -0.5688 16 7 7.6612 8.2378 -0.3266 17 14 5.9547 6.6395 -1.8129 18 1 4.6290 6.7565 -1.1541 19 1 6.0407 7.6153 -2.9290 20 1 6.1236 5.2633 -2.3445 21 6 8.1081 3.5149 -0.7637 22 6 8.0835 3.4546 0.7657 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6567 1.1890 -2.1368 31 1 5.1679 0.7864 -1.2867 32 1 3.7805 -0.3262 -1.2111 33 1 3.6522 -0.2805 1.2911 34 1 5.1665 0.6516 1.2115 35 1 4.0255 0.9908 3.3869 36 1 4.0901 2.5067 2.4557 37 1 2.5758 1.5747 2.5354 38 1 5.4406 4.9225 -0.9296 39 1 5.4021 5.0592 0.8446 40 1 7.2265 8.9685 -0.7936 41 1 7.5274 2.7691 -1.3067 42 1 9.0381 3.8248 -1.2402 43 1 8.9974 3.7250 1.2946 44 1 7.4867 2.6693 1.2295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796733852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:53 Heat of formation + Delta-G solvation = -95.870300 kcal Electronic energy + Delta-G solvation = -22020.162798 eV Core-core repulsion = 18937.416303 eV Total energy + Delta-G solvation = -3082.746495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.03049 -39.40381 -38.13797 -36.94283 -34.46186 -33.91890 -31.49260 -29.66636 -27.64953 -27.45258 -25.20913 -24.16361 -23.11590 -22.39713 -21.13559 -20.06010 -18.85770 -18.35614 -17.74828 -17.29538 -16.73515 -16.39943 -15.80664 -15.54175 -15.28137 -14.87282 -14.56036 -14.44155 -14.14645 -13.93407 -13.67092 -13.32794 -13.12378 -13.04459 -12.78015 -12.71343 -12.67041 -12.45333 -12.17188 -12.09618 -11.92741 -11.85518 -11.81123 -11.54256 -11.43765 -11.24678 -11.23170 -11.09113 -10.69791 -10.31946 -8.49562 -6.44869 1.10982 1.17597 1.20661 1.25368 1.62215 2.13272 2.70625 3.32002 3.45384 3.59045 3.74726 3.90584 3.93801 4.01606 4.12597 4.20152 4.26286 4.37727 4.43535 4.50428 4.64552 4.66580 4.71935 4.75062 4.83919 4.86496 4.92598 4.94995 4.99583 5.08447 5.11843 5.17392 5.19373 5.21591 5.22141 5.38470 5.42645 5.48364 5.53690 5.55214 5.56364 6.16321 6.54773 6.66456 7.13879 8.66919 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.005641 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.273791 B = 4962.499491 C = 5405.829201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.047 4.047 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.161 4.161 8 C 0.456 3.544 9 O -0.552 6.552 10 O -0.340 6.340 11 C 0.095 3.905 12 C -0.034 4.034 13 C -0.486 4.486 14 H 0.054 0.946 15 C 0.034 3.966 16 N -0.928 5.928 17 Si 0.925 3.075 18 H -0.285 1.285 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.180 4.180 22 C -0.153 4.153 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.271 0.729 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 -21.978 0.371 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.048 4.048 5 C -0.200 4.200 6 C -0.146 4.146 7 C -0.218 4.218 8 C 0.301 3.699 9 O -0.443 6.443 10 O -0.256 6.256 11 C 0.022 3.978 12 C -0.035 4.035 13 C -0.524 4.524 14 H 0.072 0.928 15 C -0.166 4.166 16 N -0.566 5.566 17 Si 0.754 3.246 18 H -0.212 1.212 19 H -0.210 1.210 20 H -0.171 1.171 21 C -0.218 4.218 22 C -0.190 4.190 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.714 -21.466 0.317 24.456 hybrid contribution -0.487 1.461 -0.499 1.619 sum -12.201 -20.005 -0.182 23.433 Atomic orbital electron populations 1.21777 0.95492 1.02343 1.01490 1.21647 0.96092 0.93939 1.03856 1.21583 0.90601 0.99360 1.02236 1.20862 0.97392 0.85722 1.00778 1.21977 1.02027 1.02187 0.93827 1.21714 1.02253 1.00187 0.90417 1.21915 1.01798 0.99061 0.99070 1.24893 0.80245 0.94147 0.70585 1.90626 1.57675 1.48725 1.47233 1.86448 1.26222 1.30713 1.82224 1.23023 0.95935 0.78950 0.99914 1.19236 0.87106 0.91456 1.05679 1.20489 1.10717 0.90276 1.30874 0.92830 1.25589 0.98625 0.94612 0.97795 1.69993 1.44590 0.99526 1.42519 0.86310 0.79442 0.78406 0.80483 1.21193 1.20982 1.17068 1.23077 1.02394 1.02333 0.93958 1.22788 1.01643 1.00269 0.94334 0.93206 0.93403 0.91101 0.90079 0.89809 0.92265 0.92878 0.92833 0.91496 0.87119 0.86651 0.90432 0.90136 0.96234 0.91867 0.93371 0.92999 0.91916 0.88933 0.89809 0.89885 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.58 5.24 30.59 0.16 -1.42 16 3 C -0.10 -2.15 3.32 30.59 0.10 -2.05 16 4 C -0.05 -1.09 0.52 -52.93 -0.03 -1.12 16 5 C -0.14 -2.70 7.97 71.98 0.57 -2.13 16 6 C -0.11 -2.02 4.63 30.59 0.14 -1.88 16 7 C -0.16 -3.47 9.35 71.98 0.67 -2.80 16 8 C 0.46 16.35 5.08 71.24 0.36 16.71 16 9 O -0.55 -24.02 15.72 21.96 0.35 -23.68 16 10 O -0.34 -13.22 8.31 -51.43 -0.43 -13.64 16 11 C 0.09 4.47 4.09 71.98 0.29 4.77 16 12 C -0.03 -1.62 1.84 -52.93 -0.10 -1.72 16 13 C -0.49 -28.01 9.57 25.60 0.25 -27.77 16 14 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 15 C 0.03 2.00 5.42 84.65 0.46 2.45 16 16 N -0.93 -57.87 13.96 21.44 0.30 -57.57 16 17 Si 0.92 47.20 24.22 68.60 1.66 48.86 16 18 H -0.28 -14.94 7.11 99.48 0.71 -14.23 16 19 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 20 H -0.25 -11.82 6.35 99.48 0.63 -11.19 16 21 C -0.18 -7.31 9.67 30.62 0.30 -7.01 16 22 C -0.15 -6.07 9.63 30.62 0.29 -5.77 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.88 6.53 -2.39 -0.02 0.86 16 27 H 0.08 0.87 6.33 -2.39 -0.02 0.86 16 28 H 0.06 1.43 6.54 -2.39 -0.02 1.41 16 29 H 0.05 1.32 8.05 -2.39 -0.02 1.30 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.11 1.28 6.67 -2.39 -0.02 1.26 16 33 H 0.12 1.33 6.20 -2.39 -0.01 1.32 16 34 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.02 0.54 7.09 -2.38 -0.02 0.53 16 37 H 0.06 1.28 6.55 -2.38 -0.02 1.26 16 38 H 0.05 2.42 2.63 -2.39 -0.01 2.42 16 39 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.09 3.37 7.88 -2.39 -0.02 3.35 16 42 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.10 3.61 7.45 -2.39 -0.02 3.59 16 Total: -1.00 -69.62 338.68 6.95 -62.66 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.89 Total: 14.40 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 4.19 Total: -31.03 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.30 Total: -57.57 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.08 Total: -37.32 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.66 Total: 48.86 kcal Total: -69.62 6.95 -62.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796733852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.207 kcal (2) G-P(sol) polarization free energy of solvation -69.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds