Wall clock time and date at job start Mon Mar 30 2020 00:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48506 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47465 * 300.00333 * 3 2 1 6 6 H 1.48500 * 109.47246 * 60.00031 * 3 2 1 7 7 C 1.37871 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47616 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47582 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47268 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47056 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99943 * 0.02562 * 13 12 11 15 15 O 1.34223 * 119.99852 * 180.02562 * 13 12 11 16 16 C 1.45201 * 116.99830 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47203 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47209 * 59.99866 * 9 7 2 25 25 H 1.09004 * 109.47203 * 300.00183 * 9 7 2 26 26 H 1.09001 * 109.47222 * 59.99529 * 10 9 7 27 27 H 1.09004 * 109.46702 * 300.00145 * 10 9 7 28 28 H 1.09008 * 109.47124 * 59.99988 * 11 10 9 29 29 H 1.08994 * 109.47265 * 300.00439 * 11 10 9 30 30 H 1.09002 * 109.46677 * 60.00566 * 12 11 10 31 31 H 1.08999 * 109.47048 * 299.99874 * 12 11 10 32 32 H 1.09001 * 109.47310 * 60.00209 * 16 15 13 33 33 H 1.09000 * 109.46920 * 299.99683 * 16 15 13 34 34 H 1.08995 * 109.46922 * 59.99817 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99814 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 6 1.7212 -7.4551 -0.0005 14 8 0.5129 -7.4551 -0.0005 15 8 2.3924 -8.6175 -0.0005 16 6 1.6016 -9.8353 0.0000 17 6 2.5336 -11.0487 -0.0007 18 6 1.7004 -12.3318 -0.0007 19 6 1.0140 -12.5459 -1.3734 20 6 0.7585 -14.0661 -1.4346 21 6 1.7734 -14.7221 -0.4822 22 6 2.6116 -13.5781 0.1248 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8906 28 1 0.8534 -5.0451 -0.8897 29 1 0.8540 -5.0446 0.8902 30 1 3.1019 -6.0922 0.8891 31 1 3.1007 -6.0923 -0.8910 32 1 0.9724 -9.8604 -0.8897 33 1 0.9732 -9.8599 0.8903 34 1 3.1631 -11.0238 0.8888 35 1 3.1617 -11.0238 -0.8912 36 1 0.9618 -12.3110 0.8007 37 1 1.6756 -12.2375 -2.1828 38 1 0.0724 -11.9987 -1.4196 39 1 0.9109 -14.4298 -2.4508 40 1 -0.2574 -14.2873 -1.1076 41 1 1.2501 -15.2611 0.3075 42 1 2.4179 -15.4049 -1.0359 43 1 2.8354 -13.7830 1.1716 44 1 3.5327 -13.4382 -0.4410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:07 Heat of formation + Delta-G solvation = -144.220753 kcal Electronic energy + Delta-G solvation = -19480.687594 eV Core-core repulsion = 16395.844465 eV Total energy + Delta-G solvation = -3084.843128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42092 -38.79718 -36.68722 -34.95266 -32.96613 -32.60406 -29.95012 -29.11725 -27.67519 -25.77148 -23.34394 -22.37221 -20.79483 -20.47683 -20.18717 -19.98882 -17.45050 -16.82229 -16.39873 -16.16600 -15.91159 -15.24256 -15.08175 -14.43344 -14.22983 -13.82072 -13.53568 -13.24758 -12.71413 -12.52836 -12.16723 -11.88209 -11.75345 -11.68750 -11.63836 -11.48004 -11.34833 -11.01249 -10.98316 -10.95808 -10.80701 -10.61248 -10.52231 -10.50462 -10.45379 -10.29076 -9.64088 -9.27836 -9.00054 -8.31455 -5.96034 -3.98511 2.33440 2.67638 3.33193 3.40462 3.44530 4.11128 4.21434 4.30129 4.48799 4.66148 4.74856 4.86386 4.99992 5.05620 5.12617 5.15577 5.20865 5.25256 5.29998 5.31948 5.38503 5.39577 5.47641 5.55753 5.63803 5.69425 5.72049 5.79925 5.83878 5.97078 6.02828 6.07469 6.21710 6.44780 6.51065 6.78160 6.96377 7.17332 7.73152 7.86671 7.87868 8.05017 8.46821 9.09322 9.65342 11.15338 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.072898 B = 0.002111 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.003823 B =13258.869430 C =13472.855179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.459 3.541 14 O -0.507 6.507 15 O -0.363 6.363 16 C 0.065 3.935 17 C -0.111 4.111 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.118 4.118 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 -28.962 -0.815 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.302 3.698 14 O -0.394 6.394 15 O -0.281 6.281 16 C -0.009 4.009 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.156 4.156 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.923 -28.891 -0.818 29.319 hybrid contribution 0.204 0.857 -0.001 0.881 sum 5.127 -28.034 -0.819 28.510 Atomic orbital electron populations 1.69983 1.06053 1.26420 1.51012 1.25047 0.94855 0.99283 0.95453 0.86545 0.80087 0.83864 0.77538 1.19756 1.21058 1.21055 1.21315 0.93062 0.91135 1.50298 0.92625 1.19107 0.94054 0.91263 0.97375 1.21650 0.99139 0.93564 1.00409 1.21575 0.97098 0.92722 1.03211 1.21606 0.99915 0.87962 1.05456 1.24200 0.87590 0.85975 0.71995 1.90670 1.15752 1.87926 1.45029 1.86505 1.42127 1.15100 1.84366 1.23047 0.93812 0.81483 1.02566 1.21567 0.98054 0.91444 1.03747 1.22098 0.97365 0.93384 0.98151 1.22519 1.00721 0.96007 0.96996 1.22130 0.99256 0.95348 0.99615 1.22128 0.97677 0.97785 0.98726 1.22392 0.98259 0.93989 1.00959 0.93093 0.96529 0.96541 0.93204 0.93199 0.91575 0.91567 0.87912 0.87918 0.91282 0.91421 0.90666 0.90642 0.90245 0.91286 0.91479 0.91883 0.91884 0.91912 0.91888 0.91552 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.95 9.11 -34.45 -0.31 -15.26 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.11 -1.53 5.81 -27.88 -0.16 -1.69 16 13 C 0.46 6.77 7.96 36.01 0.29 7.05 16 14 O -0.51 -9.03 15.73 -18.76 -0.30 -9.33 16 15 O -0.36 -4.64 10.22 -39.24 -0.40 -5.04 16 16 C 0.06 0.68 5.36 37.16 0.20 0.88 16 17 C -0.11 -0.86 5.10 -26.73 -0.14 -0.99 16 18 C -0.09 -0.61 2.86 -88.59 -0.25 -0.87 16 19 C -0.12 -0.85 5.71 -25.03 -0.14 -0.99 16 20 C -0.13 -0.76 6.80 -25.61 -0.17 -0.93 16 21 C -0.13 -0.71 6.80 -25.62 -0.17 -0.88 16 22 C -0.12 -0.69 6.27 -25.07 -0.16 -0.85 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.22 8.10 -51.92 -0.42 0.80 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 33 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 38 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.39 8.05 -51.93 -0.42 -0.02 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -32.16 357.95 -9.47 -41.63 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -8.36 Total: -5.72 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.52 Total: -17.08 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.70 Total: -14.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.16 -9.47 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.592 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds