Wall clock time and date at job start Mon Mar 30 2020 00:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48506 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47465 * 300.00333 * 3 2 1 6 6 H 1.48500 * 109.47246 * 60.00031 * 3 2 1 7 7 C 1.37871 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47616 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47582 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47268 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47056 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99943 * 0.02562 * 13 12 11 15 15 O 1.34223 * 119.99852 * 180.02562 * 13 12 11 16 16 C 1.45201 * 116.99830 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47203 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47209 * 59.99866 * 9 7 2 25 25 H 1.09004 * 109.47203 * 300.00183 * 9 7 2 26 26 H 1.09001 * 109.47222 * 59.99529 * 10 9 7 27 27 H 1.09004 * 109.46702 * 300.00145 * 10 9 7 28 28 H 1.09008 * 109.47124 * 59.99988 * 11 10 9 29 29 H 1.08994 * 109.47265 * 300.00439 * 11 10 9 30 30 H 1.09002 * 109.46677 * 60.00566 * 12 11 10 31 31 H 1.08999 * 109.47048 * 299.99874 * 12 11 10 32 32 H 1.09001 * 109.47310 * 60.00209 * 16 15 13 33 33 H 1.09000 * 109.46920 * 299.99683 * 16 15 13 34 34 H 1.08995 * 109.46922 * 59.99817 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99814 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4747 -6.1500 -0.0005 13 6 1.7212 -7.4551 -0.0005 14 8 0.5129 -7.4551 -0.0005 15 8 2.3924 -8.6175 -0.0005 16 6 1.6016 -9.8353 0.0000 17 6 2.5336 -11.0487 -0.0007 18 6 1.7004 -12.3318 -0.0007 19 6 1.0140 -12.5459 -1.3734 20 6 0.7585 -14.0661 -1.4346 21 6 1.7734 -14.7221 -0.4822 22 6 2.6116 -13.5781 0.1248 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8906 28 1 0.8534 -5.0451 -0.8897 29 1 0.8540 -5.0446 0.8902 30 1 3.1019 -6.0922 0.8891 31 1 3.1007 -6.0923 -0.8910 32 1 0.9724 -9.8604 -0.8897 33 1 0.9732 -9.8599 0.8903 34 1 3.1631 -11.0238 0.8888 35 1 3.1617 -11.0238 -0.8912 36 1 0.9618 -12.3110 0.8007 37 1 1.6756 -12.2375 -2.1828 38 1 0.0724 -11.9987 -1.4196 39 1 0.9109 -14.4298 -2.4508 40 1 -0.2574 -14.2873 -1.1076 41 1 1.2501 -15.2611 0.3075 42 1 2.4179 -15.4049 -1.0359 43 1 2.8354 -13.7830 1.1716 44 1 3.5327 -13.4382 -0.4410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:06 Heat of formation + Delta-G solvation = -159.776161 kcal Electronic energy + Delta-G solvation = -19481.362127 eV Core-core repulsion = 16395.844465 eV Total energy + Delta-G solvation = -3085.517661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54699 -39.36701 -37.79274 -36.62219 -34.66769 -33.58276 -31.64187 -29.60694 -28.56337 -27.39646 -24.71475 -23.49017 -22.06283 -21.50595 -21.04404 -20.80744 -18.62017 -18.36436 -17.85420 -17.31236 -16.70117 -16.45345 -16.27987 -15.74897 -15.27942 -14.64406 -14.57219 -14.27971 -14.11731 -13.80795 -13.58331 -13.40472 -13.08854 -12.85441 -12.61304 -12.33263 -12.24032 -12.19708 -12.18105 -12.00299 -11.93853 -11.72348 -11.52984 -11.49142 -11.39374 -11.29702 -11.26997 -11.25072 -11.02148 -10.55121 -8.18600 -6.30299 1.18020 1.41227 1.41811 1.55364 1.65999 2.42381 3.14445 3.52217 3.66442 3.72397 3.85714 4.00256 4.01680 4.09088 4.10640 4.33169 4.44756 4.52076 4.58916 4.61530 4.64411 4.67356 4.75847 4.78714 4.86206 4.86776 4.92429 5.04434 5.10582 5.12302 5.14733 5.24839 5.30225 5.32922 5.33780 5.46181 5.49911 5.52076 5.57468 5.78125 5.88661 6.25854 6.73997 6.88464 7.39336 8.93770 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.072898 B = 0.002111 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.003823 B =13258.869430 C =13472.855179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.103 4.103 13 C 0.463 3.537 14 O -0.546 6.546 15 O -0.358 6.358 16 C 0.060 3.940 17 C -0.101 4.101 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.116 4.116 23 H 0.262 0.738 24 H -0.013 1.013 25 H -0.013 1.013 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.875 -29.657 -0.761 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.308 3.692 14 O -0.436 6.436 15 O -0.275 6.275 16 C -0.014 4.014 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.154 4.154 23 H 0.071 0.929 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.377 -29.613 -0.764 30.528 hybrid contribution -0.604 1.019 -0.024 1.185 sum 6.773 -28.594 -0.788 29.396 Atomic orbital electron populations 1.70132 1.08014 1.27661 1.51994 1.26083 0.95797 1.03720 0.94863 0.85336 0.79204 0.78470 0.77638 1.18122 1.20532 1.20521 1.21790 0.93795 0.92217 1.50033 0.91539 1.19070 0.94710 0.93683 0.94518 1.21443 0.97890 0.92344 1.01695 1.21355 0.97460 0.93308 1.01716 1.21500 0.98827 0.85609 1.08043 1.24349 0.87026 0.86855 0.70932 1.90666 1.17440 1.88476 1.47019 1.86493 1.42033 1.15184 1.83741 1.23283 0.94454 0.81453 1.02204 1.21542 0.97636 0.90386 1.04285 1.22086 0.97440 0.93336 0.97998 1.22535 1.00342 0.96565 0.97092 1.22143 0.99469 0.94777 1.00057 1.22139 0.97620 0.97796 0.98753 1.22388 0.98137 0.93367 1.01476 0.92879 0.99499 0.99506 0.91793 0.91793 0.93208 0.93189 0.85233 0.85259 0.91765 0.91816 0.89985 0.90173 0.90463 0.91324 0.92318 0.91520 0.91945 0.91603 0.91231 0.90935 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.29 21.44 0.28 -58.44 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.84 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.51 4.50 30.60 0.14 -3.37 16 12 C -0.10 -2.58 5.81 29.85 0.17 -2.40 16 13 C 0.46 13.16 7.96 71.24 0.57 13.72 16 14 O -0.55 -19.61 15.73 21.94 0.35 -19.27 16 15 O -0.36 -8.56 10.22 -51.35 -0.52 -9.08 16 16 C 0.06 1.20 5.36 71.98 0.39 1.59 16 17 C -0.10 -1.41 5.10 30.59 0.16 -1.25 16 18 C -0.09 -1.10 2.86 -9.48 -0.03 -1.13 16 19 C -0.13 -1.64 5.71 31.70 0.18 -1.46 16 20 C -0.13 -1.40 6.80 31.32 0.21 -1.19 16 21 C -0.13 -1.21 6.80 31.32 0.21 -1.00 16 22 C -0.12 -1.15 6.27 31.67 0.20 -0.95 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.05 1.88 8.10 -2.38 -0.02 1.86 16 29 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 30 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 1.36 7.65 -2.39 -0.02 1.34 16 33 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.06 8.00 -2.39 -0.02 1.04 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.88 7.95 -2.39 -0.02 0.86 16 38 H 0.06 0.83 8.10 -2.39 -0.02 0.82 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.68 8.05 -2.39 -0.02 0.66 16 Total: -1.00 -70.11 357.95 6.25 -63.86 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.92 Total: 7.09 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.20 Total: -30.93 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.44 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.18 Total: -28.35 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.11 6.25 -63.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.916 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds