Wall clock time and date at job start Mon Mar 30 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 8 8 H 1.09003 * 110.02851 * 359.97438 * 7 2 1 9 9 O 1.45198 * 110.03499 * 238.57033 * 7 2 1 10 10 C 1.34225 * 117.00174 * 149.99702 * 9 7 2 11 11 O 1.20825 * 120.00367 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00079 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.47286 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47174 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47286 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00269 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00175 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46756 * 90.00518 * 20 18 16 22 22 H 1.48494 * 109.47002 * 210.00172 * 20 18 16 23 23 H 1.48495 * 109.47028 * 330.00289 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 27 27 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 28 28 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 29 29 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 30 30 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 31 31 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 32 32 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 33 33 H 1.09004 * 110.92277 * 156.29255 * 5 4 2 34 34 H 1.09002 * 110.48236 * 203.40453 * 6 5 4 35 35 H 1.08999 * 110.48758 * 80.76846 * 6 5 4 36 36 H 1.08994 * 109.47308 * 300.00317 * 12 10 9 37 37 H 1.09004 * 109.46642 * 60.00010 * 12 10 9 38 38 H 1.09001 * 109.47310 * 299.99978 * 13 12 10 39 39 H 1.08998 * 109.46877 * 60.00231 * 13 12 10 40 40 H 1.09001 * 109.47380 * 300.00303 * 14 13 12 41 41 H 1.09001 * 109.47708 * 59.99810 * 14 13 12 42 42 H 1.08994 * 109.47218 * 300.00034 * 15 14 13 43 43 H 1.09004 * 109.47259 * 60.00049 * 15 14 13 44 44 H 0.96999 * 120.00334 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1180 1.8332 9 8 2.8958 0.1241 2.0313 10 6 2.9279 -0.1002 3.3542 11 8 2.2772 -1.0000 3.8305 12 6 3.7766 0.7695 4.2456 13 6 3.6342 0.3053 5.6965 14 6 4.4952 1.1886 6.6015 15 6 4.3533 0.7240 8.0523 16 6 5.2020 1.5937 8.9436 17 1 5.7840 2.3977 8.5179 18 6 5.2346 1.3636 10.3027 19 7 4.5254 0.3849 10.8211 20 14 6.2859 2.4421 11.4076 21 1 5.4848 3.6021 11.8744 22 1 6.7434 1.6529 12.5793 23 1 7.4652 2.9286 10.6475 24 1 -0.3633 0.5247 -0.8836 25 1 -0.3633 0.5030 0.8962 26 1 -0.3634 -1.0276 -0.0125 27 1 1.7056 1.9511 0.8961 28 1 3.1436 1.4272 -0.0126 29 1 1.6851 1.9585 -0.8837 30 1 1.3142 -1.4654 -1.5972 31 1 2.3297 -0.0528 -2.0255 32 1 4.1710 -0.8294 -0.6748 33 1 3.5356 -2.3685 -1.3402 34 1 3.7637 -2.1031 1.3319 35 1 2.2772 -2.8423 0.6585 36 1 4.8201 0.6938 3.9403 37 1 3.4478 1.8054 4.1620 38 1 2.5905 0.3814 6.0016 39 1 3.9626 -0.7307 5.7803 40 1 5.5390 1.1129 6.2965 41 1 4.1665 2.2245 6.5175 42 1 3.3097 0.7993 8.3575 43 1 4.6824 -0.3118 8.1359 44 1 4.5480 0.2232 11.7772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:03 Heat of formation + Delta-G solvation = -135.197617 kcal Electronic energy + Delta-G solvation = -20524.984200 eV Core-core repulsion = 17440.532344 eV Total energy + Delta-G solvation = -3084.451856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80207 -38.83195 -35.96570 -34.93712 -32.67469 -32.51785 -30.03013 -28.48537 -27.54469 -25.89730 -24.69291 -22.83747 -21.30448 -20.20272 -19.97692 -19.15986 -17.52979 -16.53186 -16.26040 -16.13290 -15.47482 -14.86354 -14.42585 -14.39736 -13.95766 -13.65779 -13.42764 -13.04270 -12.64696 -12.56114 -12.46991 -12.06967 -11.88023 -11.72368 -11.68022 -11.48123 -11.24560 -10.99970 -10.87690 -10.83158 -10.79632 -10.59322 -10.53742 -10.44859 -10.39943 -10.23190 -9.63846 -9.27498 -9.01179 -8.31115 -5.95893 -3.98482 2.35929 2.72756 3.34115 3.40165 3.43471 4.09118 4.20210 4.47062 4.49528 4.74595 4.94859 4.96623 5.01095 5.05671 5.18115 5.25585 5.29963 5.34673 5.39648 5.40833 5.49586 5.57435 5.61159 5.65070 5.69424 5.76626 5.81800 5.89668 5.98637 6.00832 6.07692 6.17832 6.23145 6.47250 6.58295 6.78298 6.96645 7.17385 7.72915 7.87957 7.91146 8.05094 8.46819 9.09152 9.65334 11.15489 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045692 B = 0.002741 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.655763 B =10214.210255 C =10283.426688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.138 4.138 7 C 0.088 3.912 8 H 0.087 0.913 9 O -0.349 6.349 10 C 0.456 3.544 11 O -0.507 6.507 12 C -0.112 4.112 13 C -0.108 4.108 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -1.309 -26.264 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.175 4.175 7 C 0.033 3.967 8 H 0.105 0.895 9 O -0.266 6.266 10 C 0.299 3.701 11 O -0.394 6.394 12 C -0.150 4.150 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.765 -1.680 -25.977 26.662 hybrid contribution 0.434 0.374 0.775 0.964 sum -5.331 -1.306 -25.201 25.792 Atomic orbital electron populations 1.21945 0.93663 1.02028 1.02287 1.21330 0.95573 0.96707 0.93076 1.21652 1.01714 0.93805 1.01391 1.22513 0.97351 0.98845 0.96474 1.22499 0.97957 0.99997 0.95546 1.22755 1.00392 0.97242 0.97157 1.23435 0.93005 0.89278 0.90954 0.89463 1.86624 1.63641 1.56449 1.19899 1.24216 0.80517 0.83754 0.81565 1.90652 1.41723 1.31592 1.75419 1.21595 0.99600 0.99271 0.94498 1.21564 1.01883 1.00838 0.90276 1.21647 0.97686 0.97800 0.97612 1.19096 0.97163 0.96614 0.88834 1.21279 1.27096 1.15421 0.92095 0.92696 1.25041 0.95810 0.95401 0.98317 1.69973 1.41029 1.30341 1.12164 0.86602 0.80710 0.80450 0.80285 1.20694 1.21252 1.19893 0.91950 0.92353 0.92379 0.92322 0.91811 0.92937 0.91269 0.91017 0.91042 0.91334 0.90805 0.90288 0.88017 0.88032 0.91610 0.91603 0.93235 0.93234 0.96568 0.96557 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.16 37.16 0.30 -0.79 16 2 C -0.07 -0.57 0.94 -153.39 -0.14 -0.72 16 3 C -0.13 -1.10 7.39 37.16 0.27 -0.83 16 4 C -0.11 -0.81 5.91 -25.03 -0.15 -0.96 16 5 C -0.12 -0.95 6.91 -24.69 -0.17 -1.12 16 6 C -0.14 -1.34 6.57 -25.07 -0.16 -1.50 16 7 C 0.09 0.97 2.87 -25.61 -0.07 0.89 16 8 H 0.09 1.08 6.68 -51.93 -0.35 0.73 16 9 O -0.35 -4.37 8.00 -39.24 -0.31 -4.69 16 10 C 0.46 6.67 7.95 36.01 0.29 6.95 16 11 O -0.51 -8.95 15.20 -18.75 -0.28 -9.24 16 12 C -0.11 -1.53 5.81 -27.88 -0.16 -1.70 16 13 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 14 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.56 7.89 -51.93 -0.41 0.15 16 28 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 31 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -31.94 353.30 -8.64 -40.58 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -8.27 Total: -4.52 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.81 Total: -17.56 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.60 Total: -13.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.94 -8.64 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.618 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds