Wall clock time and date at job start Mon Mar 30 2020 00:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 8 8 H 1.09003 * 110.02851 * 359.97438 * 7 2 1 9 9 O 1.45198 * 110.03499 * 238.57033 * 7 2 1 10 10 C 1.34225 * 117.00174 * 149.99702 * 9 7 2 11 11 O 1.20825 * 120.00367 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00079 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.47286 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47174 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47174 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47286 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00269 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00175 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46756 * 90.00518 * 20 18 16 22 22 H 1.48494 * 109.47002 * 210.00172 * 20 18 16 23 23 H 1.48495 * 109.47028 * 330.00289 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 27 27 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 28 28 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 29 29 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 30 30 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 31 31 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 32 32 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 33 33 H 1.09004 * 110.92277 * 156.29255 * 5 4 2 34 34 H 1.09002 * 110.48236 * 203.40453 * 6 5 4 35 35 H 1.08999 * 110.48758 * 80.76846 * 6 5 4 36 36 H 1.08994 * 109.47308 * 300.00317 * 12 10 9 37 37 H 1.09004 * 109.46642 * 60.00010 * 12 10 9 38 38 H 1.09001 * 109.47310 * 299.99978 * 13 12 10 39 39 H 1.08998 * 109.46877 * 60.00231 * 13 12 10 40 40 H 1.09001 * 109.47380 * 300.00303 * 14 13 12 41 41 H 1.09001 * 109.47708 * 59.99810 * 14 13 12 42 42 H 1.08994 * 109.47218 * 300.00034 * 15 14 13 43 43 H 1.09004 * 109.47259 * 60.00049 * 15 14 13 44 44 H 0.96999 * 120.00334 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 1.2229 -1.1180 1.8332 9 8 2.8958 0.1241 2.0313 10 6 2.9279 -0.1002 3.3542 11 8 2.2772 -1.0000 3.8305 12 6 3.7766 0.7695 4.2456 13 6 3.6342 0.3053 5.6965 14 6 4.4952 1.1886 6.6015 15 6 4.3533 0.7240 8.0523 16 6 5.2020 1.5937 8.9436 17 1 5.7840 2.3977 8.5179 18 6 5.2346 1.3636 10.3027 19 7 4.5254 0.3849 10.8211 20 14 6.2859 2.4421 11.4076 21 1 5.4848 3.6021 11.8744 22 1 6.7434 1.6529 12.5793 23 1 7.4652 2.9286 10.6475 24 1 -0.3633 0.5247 -0.8836 25 1 -0.3633 0.5030 0.8962 26 1 -0.3634 -1.0276 -0.0125 27 1 1.7056 1.9511 0.8961 28 1 3.1436 1.4272 -0.0126 29 1 1.6851 1.9585 -0.8837 30 1 1.3142 -1.4654 -1.5972 31 1 2.3297 -0.0528 -2.0255 32 1 4.1710 -0.8294 -0.6748 33 1 3.5356 -2.3685 -1.3402 34 1 3.7637 -2.1031 1.3319 35 1 2.2772 -2.8423 0.6585 36 1 4.8201 0.6938 3.9403 37 1 3.4478 1.8054 4.1620 38 1 2.5905 0.3814 6.0016 39 1 3.9626 -0.7307 5.7803 40 1 5.5390 1.1129 6.2965 41 1 4.1665 2.2245 6.5175 42 1 3.3097 0.7993 8.3575 43 1 4.6824 -0.3118 8.1359 44 1 4.5480 0.2232 11.7772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:02 Heat of formation + Delta-G solvation = -151.010296 kcal Electronic energy + Delta-G solvation = -20525.669889 eV Core-core repulsion = 17440.532344 eV Total energy + Delta-G solvation = -3085.137545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83339 -39.73586 -37.09849 -36.56088 -34.66625 -33.19609 -31.72765 -29.35356 -28.25075 -27.56171 -25.55927 -24.43791 -22.41568 -21.70673 -21.12474 -19.92270 -18.66761 -18.38775 -17.58133 -17.23762 -16.50425 -16.41299 -15.72326 -15.70910 -14.70269 -14.57800 -14.37304 -14.20007 -14.10461 -13.85211 -13.58988 -13.33619 -13.09107 -13.06214 -12.82766 -12.64562 -12.36759 -12.21868 -12.20359 -12.16094 -11.94512 -11.66618 -11.54327 -11.48594 -11.42848 -11.40916 -11.30380 -11.20018 -11.03407 -10.55148 -8.19144 -6.31105 1.19840 1.40606 1.42684 1.53798 1.69321 2.41952 3.13866 3.38517 3.49568 3.66035 3.85197 3.96968 4.06947 4.21222 4.27221 4.31101 4.37471 4.42810 4.54859 4.62069 4.66255 4.76443 4.79259 4.82913 4.84391 4.92620 4.97708 5.01212 5.08337 5.12459 5.13046 5.26486 5.29759 5.31570 5.35130 5.35908 5.51824 5.54352 5.58557 5.76750 5.87518 6.24941 6.77820 6.87418 7.38616 8.93159 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045692 B = 0.002741 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.655763 B =10214.210255 C =10283.426688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.078 3.922 8 H 0.067 0.933 9 O -0.341 6.341 10 C 0.460 3.540 11 O -0.545 6.545 12 C -0.103 4.103 13 C -0.099 4.099 14 C -0.096 4.096 15 C 0.019 3.981 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.063 0.937 42 H -0.014 1.014 43 H -0.014 1.014 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 0.248 -28.319 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.184 4.184 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.178 4.178 7 C 0.023 3.977 8 H 0.085 0.915 9 O -0.258 6.258 10 C 0.305 3.695 11 O -0.436 6.436 12 C -0.140 4.140 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.018 4.018 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.183 1.183 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.781 -0.106 -28.067 28.471 hybrid contribution 0.082 -0.161 1.397 1.409 sum -4.699 -0.267 -26.669 27.082 Atomic orbital electron populations 1.21948 0.93041 1.02360 1.02479 1.21396 0.96074 0.96670 0.92465 1.21647 1.01418 0.93743 1.01632 1.22515 0.97102 0.99089 0.95872 1.22492 0.98183 1.00628 0.94194 1.22786 0.99654 0.97052 0.98321 1.23733 0.92462 0.90103 0.91357 0.91488 1.86610 1.63675 1.56602 1.18894 1.24341 0.79814 0.83068 0.82279 1.90646 1.43436 1.33307 1.76176 1.21483 1.01065 1.00070 0.91394 1.21340 1.00139 0.99496 0.92747 1.21439 0.99129 0.98705 0.94054 1.19049 0.94895 0.94994 0.92869 1.21759 1.27402 1.15899 0.92930 0.91564 1.26078 0.97179 0.96852 1.00238 1.70125 1.42734 1.32296 1.12698 0.85391 0.79061 0.78365 0.77894 1.19715 1.20948 1.18333 0.90173 0.93671 0.92086 0.93658 0.92237 0.91103 0.90155 0.89523 0.91291 0.89779 0.92410 0.89726 0.85462 0.85473 0.93268 0.93260 0.91859 0.91834 0.99561 0.99551 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.16 71.98 0.59 -1.38 16 2 C -0.07 -1.03 0.94 -51.46 -0.05 -1.07 16 3 C -0.13 -1.95 7.39 71.98 0.53 -1.42 16 4 C -0.11 -1.25 5.91 31.70 0.19 -1.06 16 5 C -0.12 -1.58 6.91 31.91 0.22 -1.36 16 6 C -0.14 -2.65 6.57 31.67 0.21 -2.44 16 7 C 0.08 1.69 2.87 31.32 0.09 1.78 16 8 H 0.07 1.72 6.68 -2.39 -0.02 1.70 16 9 O -0.34 -8.35 8.00 -51.37 -0.41 -8.76 16 10 C 0.46 13.36 7.95 71.24 0.57 13.93 16 11 O -0.55 -19.90 15.20 21.97 0.33 -19.57 16 12 C -0.10 -2.67 5.81 29.85 0.17 -2.49 16 13 C -0.10 -3.53 4.50 30.59 0.14 -3.40 16 14 C -0.10 -3.87 5.15 30.59 0.16 -3.72 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 18 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 19 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 20 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 27 H 0.04 0.81 7.89 -2.39 -0.02 0.79 16 28 H 0.06 0.96 7.83 -2.39 -0.02 0.94 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.08 0.77 7.84 -2.39 -0.02 0.76 16 31 H 0.09 0.79 7.84 -2.39 -0.02 0.77 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.26 8.07 -2.39 -0.02 1.24 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 44 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -70.66 353.30 6.82 -63.84 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.93 Total: 8.84 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.66 Total: -32.49 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.28 Total: -58.70 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.08 Total: -28.33 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.66 6.82 -63.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.168 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds