Wall clock time and date at job start Mon Mar 30 2020 00:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 110.05871 * 2 1 4 4 C 1.54267 * 110.03194 * 238.57955 * 2 1 3 5 5 C 1.54892 * 104.19919 * 217.10791 * 4 2 1 6 6 C 1.54893 * 102.74459 * 37.94434 * 5 4 2 7 7 C 1.53875 * 110.03154 * 121.42074 * 2 1 3 8 8 H 1.08999 * 110.07225 * 238.59395 * 7 2 1 9 9 O 1.45198 * 110.03169 * 359.97438 * 7 2 1 10 10 C 1.34232 * 117.00556 * 208.62392 * 9 7 2 11 11 O 1.20824 * 119.99458 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00401 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46886 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.08993 * 109.47014 * 298.58616 * 1 2 3 25 25 H 1.09004 * 109.46908 * 58.58472 * 1 2 3 26 26 H 1.09004 * 109.46916 * 178.58139 * 1 2 3 27 27 H 1.09000 * 109.47207 * 181.41357 * 3 2 1 28 28 H 1.08997 * 109.47103 * 301.41536 * 3 2 1 29 29 H 1.09002 * 109.46967 * 61.41737 * 3 2 1 30 30 H 1.09004 * 110.48284 * 98.43162 * 4 2 1 31 31 H 1.09000 * 110.48824 * 335.79138 * 4 2 1 32 32 H 1.09002 * 110.75367 * 279.63228 * 5 4 2 33 33 H 1.08997 * 110.91606 * 156.33438 * 5 4 2 34 34 H 1.08998 * 110.47985 * 203.38079 * 6 5 4 35 35 H 1.08995 * 110.48286 * 80.73799 * 6 5 4 36 36 H 1.08992 * 109.46894 * 60.00099 * 12 10 9 37 37 H 1.09001 * 109.46436 * 299.99819 * 12 10 9 38 38 H 1.09001 * 109.46741 * 59.99975 * 13 12 10 39 39 H 1.09002 * 109.47398 * 300.00078 * 13 12 10 40 40 H 1.09001 * 109.46652 * 60.00345 * 14 13 12 41 41 H 1.08992 * 109.47514 * 300.00434 * 14 13 12 42 42 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 43 43 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 44 44 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3137 -1.5009 -0.7191 6 6 2.8874 -1.9408 0.7036 7 6 2.0571 -0.7536 1.2337 8 1 2.6865 -0.0959 1.8332 9 8 0.9459 -1.2403 2.0315 10 6 1.1553 -1.3746 3.3505 11 8 2.2315 -1.0943 3.8229 12 6 0.0482 -1.8750 4.2423 13 6 0.5456 -1.9350 5.6879 14 6 -0.5785 -2.4424 6.5933 15 6 -0.0813 -2.5019 8.0391 16 6 -1.1884 -3.0022 8.9308 17 1 -2.1502 -3.2531 8.5085 18 6 -0.9734 -3.1397 10.2857 19 7 -1.9393 -3.5768 11.0638 20 14 0.6905 -2.7063 11.0161 21 1 0.6998 -1.2750 11.4116 22 1 0.9420 -3.5518 12.2106 23 1 1.7524 -2.9477 10.0063 24 1 -0.3633 0.4917 0.9023 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7175 1.9470 0.9024 30 1 2.3298 -0.0537 -2.0254 31 1 1.3142 -1.4660 -1.5966 32 1 4.1710 -0.8292 -0.6751 33 1 3.5357 -2.3679 -1.3413 34 1 3.7637 -2.1038 1.3309 35 1 2.2771 -2.8426 0.6571 36 1 -0.2547 -2.8715 3.9210 37 1 -0.8036 -1.1979 4.1785 38 1 0.8489 -0.9387 6.0094 39 1 1.3974 -2.6123 5.7513 40 1 -0.8822 -3.4387 6.2719 41 1 -1.4300 -1.7650 6.5299 42 1 0.7704 -3.1791 8.1029 43 1 0.2220 -1.5054 8.3602 44 1 -1.7881 -3.6731 12.0171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:06 Heat of formation + Delta-G solvation = -132.259637 kcal Electronic energy + Delta-G solvation = -20544.099684 eV Core-core repulsion = 17459.775229 eV Total energy + Delta-G solvation = -3084.324455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83877 -38.90555 -36.08588 -35.07523 -32.64483 -32.56214 -30.39781 -28.51441 -27.63264 -26.18775 -24.73112 -22.62266 -21.25397 -20.34225 -20.07444 -19.19100 -17.62704 -16.59851 -16.35018 -16.27210 -15.56717 -15.08169 -14.58079 -14.19257 -13.94529 -13.73528 -13.39000 -13.10462 -12.81413 -12.66671 -12.46992 -12.27615 -12.16394 -11.88434 -11.77467 -11.50206 -11.35533 -11.15492 -10.93731 -10.88240 -10.79188 -10.76676 -10.59450 -10.48845 -10.32620 -9.87281 -9.67789 -9.52645 -9.13788 -8.50237 -6.01214 -3.98887 2.29066 2.67180 3.34494 3.41610 3.47086 4.04655 4.16331 4.42874 4.49174 4.66993 4.88511 4.92263 4.97745 5.05775 5.06822 5.17361 5.21683 5.27978 5.33549 5.36727 5.48046 5.53525 5.56248 5.59072 5.66594 5.71762 5.76729 5.83153 5.94442 5.96377 5.98406 6.06976 6.13621 6.33718 6.51646 6.62145 6.76739 6.95759 7.35538 7.48272 7.82523 7.85204 8.57402 9.03830 9.61952 11.12295 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041612 B = 0.002916 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.728146 B = 9599.182394 C = 9801.023472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.090 3.910 8 H 0.087 0.913 9 O -0.349 6.349 10 C 0.457 3.543 11 O -0.509 6.509 12 C -0.112 4.112 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 7.075 -27.144 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.179 4.179 7 C 0.035 3.965 8 H 0.105 0.895 9 O -0.266 6.266 10 C 0.301 3.699 11 O -0.396 6.396 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.578 7.130 -26.839 29.065 hybrid contribution 0.959 0.226 0.611 1.159 sum 9.536 7.356 -26.228 28.861 Atomic orbital electron populations 1.21671 0.93043 1.02499 1.01481 1.21289 0.97183 0.95063 0.93205 1.21930 1.01023 0.94570 1.02281 1.22492 0.97330 0.98935 0.96396 1.22421 0.97808 1.00234 0.95525 1.22793 0.99929 0.98271 0.96888 1.23481 0.86421 0.95774 0.90871 0.89460 1.86632 1.42481 1.77279 1.20220 1.24190 0.89830 0.74345 0.81562 1.90644 1.27174 1.46338 1.75432 1.21570 0.95616 1.03513 0.94291 1.21596 0.99863 1.02650 0.90738 1.21472 0.96220 1.00179 0.96101 1.19576 0.97168 0.96387 0.92119 1.21176 0.99041 1.43663 0.91917 0.91045 1.25042 0.96654 0.94678 0.97222 1.69920 1.32484 1.47122 1.04944 0.86774 0.85230 0.78539 0.78745 1.20312 1.21441 1.18932 0.92292 0.92886 0.91836 0.92387 0.91928 0.92369 0.91121 0.90950 0.91248 0.90971 0.90816 0.90332 0.87843 0.87850 0.91610 0.91593 0.92590 0.92616 0.96597 0.97030 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 7.41 37.16 0.28 -0.80 16 2 C -0.07 -0.56 0.94 -153.39 -0.14 -0.70 16 3 C -0.14 -1.03 8.15 37.15 0.30 -0.73 16 4 C -0.11 -0.78 5.90 -25.07 -0.15 -0.92 16 5 C -0.12 -0.86 6.91 -24.73 -0.17 -1.03 16 6 C -0.14 -1.33 6.56 -25.07 -0.16 -1.49 16 7 C 0.09 0.95 2.85 -25.62 -0.07 0.87 16 8 H 0.09 1.04 6.72 -51.93 -0.35 0.70 16 9 O -0.35 -4.22 8.01 -39.26 -0.31 -4.54 16 10 C 0.46 6.39 7.95 36.01 0.29 6.68 16 11 O -0.51 -8.59 15.21 -18.75 -0.29 -8.87 16 12 C -0.11 -1.46 5.81 -27.88 -0.16 -1.62 16 13 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 15 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 16 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.36 13.96 55.43 0.77 -27.58 16 20 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 24 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -32.26 349.72 -8.27 -40.52 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -8.24 Total: -4.54 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.80 Total: -17.87 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.77 Total: -27.58 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.60 Total: -13.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.26 -8.27 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.737 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds