Wall clock time and date at job start Mon Mar 30 2020 00:38:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52991 * 110.05871 * 2 1
4 4 C 1.54267 * 110.03194 * 238.57955 * 2 1 3
5 5 C 1.54892 * 104.19919 * 217.10791 * 4 2 1
6 6 C 1.54893 * 102.74459 * 37.94434 * 5 4 2
7 7 C 1.53875 * 110.03154 * 121.42074 * 2 1 3
8 8 H 1.08999 * 110.07225 * 238.59395 * 7 2 1
9 9 O 1.45198 * 110.03169 * 359.97438 * 7 2 1
10 10 C 1.34232 * 117.00556 * 208.62392 * 9 7 2
11 11 O 1.20824 * 119.99458 * 0.02562 * 10 9 7
12 12 C 1.50703 * 120.00401 * 180.02562 * 10 9 7
13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.46886 * 179.97438 * 13 12 10
15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12
16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13
17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14
18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14
19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15
20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15
21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16
22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16
23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16
24 24 H 1.08993 * 109.47014 * 298.58616 * 1 2 3
25 25 H 1.09004 * 109.46908 * 58.58472 * 1 2 3
26 26 H 1.09004 * 109.46916 * 178.58139 * 1 2 3
27 27 H 1.09000 * 109.47207 * 181.41357 * 3 2 1
28 28 H 1.08997 * 109.47103 * 301.41536 * 3 2 1
29 29 H 1.09002 * 109.46967 * 61.41737 * 3 2 1
30 30 H 1.09004 * 110.48284 * 98.43162 * 4 2 1
31 31 H 1.09000 * 110.48824 * 335.79138 * 4 2 1
32 32 H 1.09002 * 110.75367 * 279.63228 * 5 4 2
33 33 H 1.08997 * 110.91606 * 156.33438 * 5 4 2
34 34 H 1.08998 * 110.47985 * 203.38079 * 6 5 4
35 35 H 1.08995 * 110.48286 * 80.73799 * 6 5 4
36 36 H 1.08992 * 109.46894 * 60.00099 * 12 10 9
37 37 H 1.09001 * 109.46436 * 299.99819 * 12 10 9
38 38 H 1.09001 * 109.46741 * 59.99975 * 13 12 10
39 39 H 1.09002 * 109.47398 * 300.00078 * 13 12 10
40 40 H 1.09001 * 109.46652 * 60.00345 * 14 13 12
41 41 H 1.08992 * 109.47514 * 300.00434 * 14 13 12
42 42 H 1.09002 * 109.47398 * 300.00496 * 15 14 13
43 43 H 1.09001 * 109.47194 * 60.00677 * 15 14 13
44 44 H 0.97000 * 119.99684 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0548 1.4371 0.0000
4 6 2.0585 -0.7556 -1.2368
5 6 3.3137 -1.5009 -0.7191
6 6 2.8874 -1.9408 0.7036
7 6 2.0571 -0.7536 1.2337
8 1 2.6865 -0.0959 1.8332
9 8 0.9459 -1.2403 2.0315
10 6 1.1553 -1.3746 3.3505
11 8 2.2315 -1.0943 3.8229
12 6 0.0482 -1.8750 4.2423
13 6 0.5456 -1.9350 5.6879
14 6 -0.5785 -2.4424 6.5933
15 6 -0.0813 -2.5019 8.0391
16 6 -1.1884 -3.0022 8.9308
17 1 -2.1502 -3.2531 8.5085
18 6 -0.9734 -3.1397 10.2857
19 7 -1.9393 -3.5768 11.0638
20 14 0.6905 -2.7063 11.0161
21 1 0.6998 -1.2750 11.4116
22 1 0.9420 -3.5518 12.2106
23 1 1.7524 -2.9477 10.0063
24 1 -0.3633 0.4917 0.9023
25 1 -0.3633 0.5357 -0.8771
26 1 -0.3633 -1.0274 -0.0254
27 1 3.1444 1.4261 -0.0254
28 1 1.6762 1.9621 -0.8770
29 1 1.7175 1.9470 0.9024
30 1 2.3298 -0.0537 -2.0254
31 1 1.3142 -1.4660 -1.5966
32 1 4.1710 -0.8292 -0.6751
33 1 3.5357 -2.3679 -1.3413
34 1 3.7637 -2.1038 1.3309
35 1 2.2771 -2.8426 0.6571
36 1 -0.2547 -2.8715 3.9210
37 1 -0.8036 -1.1979 4.1785
38 1 0.8489 -0.9387 6.0094
39 1 1.3974 -2.6123 5.7513
40 1 -0.8822 -3.4387 6.2719
41 1 -1.4300 -1.7650 6.5299
42 1 0.7704 -3.1791 8.1029
43 1 0.2220 -1.5054 8.3602
44 1 -1.7881 -3.6731 12.0171
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000805696915.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:38:05
Heat of formation + Delta-G solvation = -148.764647 kcal
Electronic energy + Delta-G solvation = -20544.815395 eV
Core-core repulsion = 17459.775229 eV
Total energy + Delta-G solvation = -3085.040166 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.81340 -39.74789 -37.15895 -36.59334 -34.65205 -33.21289 -32.07752 -29.37339
-28.26199 -27.73902 -25.53134 -24.13093 -22.18640 -21.74522 -21.33588 -19.92797
-18.90391 -18.60986 -17.42503 -17.19195 -16.32570 -16.24375 -16.14786 -15.63113
-14.91524 -14.67965 -14.46617 -14.15924 -14.01844 -13.88045 -13.76229 -13.43734
-13.28461 -13.09784 -12.88236 -12.58283 -12.38027 -12.18488 -12.14261 -11.99351
-11.76636 -11.71466 -11.58738 -11.47387 -11.41810 -11.40932 -11.32658 -11.26580
-11.15548 -10.76238 -8.29747 -6.33029 1.19946 1.34918 1.36465 1.49026
1.69904 2.35806 3.05750 3.37983 3.50060 3.65648 3.81978 3.94311
4.07519 4.24414 4.26118 4.27226 4.37027 4.38844 4.52733 4.58822
4.65041 4.72437 4.77752 4.80284 4.85597 4.89694 4.95008 5.03307
5.08206 5.08528 5.12813 5.17108 5.20493 5.24989 5.30710 5.39728
5.49666 5.55000 5.59957 5.63684 5.68068 6.29337 6.75124 6.77670
7.31840 8.86952
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.041612 B = 0.002916 C = 0.002856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 672.728146 B = 9599.182394 C = 9801.023472
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.067 4.067
3 C -0.140 4.140
4 C -0.109 4.109
5 C -0.117 4.117
6 C -0.143 4.143
7 C 0.080 3.920
8 H 0.069 0.931
9 O -0.344 6.344
10 C 0.461 3.539
11 O -0.543 6.543
12 C -0.106 4.106
13 C -0.101 4.101
14 C -0.094 4.094
15 C -0.017 4.017
16 C -0.531 4.531
17 H 0.037 0.963
18 C 0.003 3.997
19 N -0.951 5.951
20 Si 0.948 3.052
21 H -0.267 1.267
22 H -0.283 1.283
23 H -0.251 1.251
24 H 0.045 0.955
25 H 0.069 0.931
26 H 0.058 0.942
27 H 0.061 0.939
28 H 0.079 0.921
29 H 0.045 0.955
30 H 0.088 0.912
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.085 0.915
34 H 0.061 0.939
35 H 0.075 0.925
36 H 0.125 0.875
37 H 0.125 0.875
38 H 0.058 0.942
39 H 0.057 0.943
40 H 0.059 0.941
41 H 0.059 0.941
42 H 0.015 0.985
43 H 0.014 0.986
44 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.430 7.760 -29.227 31.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.067 4.067
3 C -0.197 4.197
4 C -0.146 4.146
5 C -0.154 4.154
6 C -0.181 4.181
7 C 0.026 3.974
8 H 0.087 0.913
9 O -0.260 6.260
10 C 0.306 3.694
11 O -0.433 6.433
12 C -0.143 4.143
13 C -0.139 4.139
14 C -0.132 4.132
15 C -0.054 4.054
16 C -0.569 4.569
17 H 0.055 0.945
18 C -0.193 4.193
19 N -0.592 5.592
20 Si 0.772 3.228
21 H -0.192 1.192
22 H -0.208 1.208
23 H -0.175 1.175
24 H 0.064 0.936
25 H 0.088 0.912
26 H 0.077 0.923
27 H 0.080 0.920
28 H 0.098 0.902
29 H 0.064 0.936
30 H 0.106 0.894
31 H 0.094 0.906
32 H 0.093 0.907
33 H 0.104 0.896
34 H 0.079 0.921
35 H 0.094 0.906
36 H 0.143 0.857
37 H 0.143 0.857
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.034 0.966
43 H 0.033 0.967
44 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 9.719 7.818 -28.957 31.529
hybrid contribution 0.522 -0.004 1.224 1.331
sum 10.241 7.815 -27.733 30.578
Atomic orbital electron populations
1.21662 0.93009 1.02257 1.01646 1.21353 0.97210 0.95458 0.92651
1.21933 1.01294 0.93992 1.02474 1.22493 0.97078 0.99131 0.95944
1.22427 0.98158 1.00916 0.93915 1.22803 0.99211 0.97726 0.98321
1.23756 0.86144 0.96296 0.91253 0.91295 1.86623 1.43112 1.76904
1.19410 1.24304 0.89370 0.73533 0.82171 1.90636 1.28557 1.48044
1.76101 1.21490 0.95657 1.05344 0.91852 1.21377 0.98337 1.01712
0.92426 1.21327 0.97240 1.00803 0.93789 1.19570 0.95550 0.95972
0.94300 1.21549 0.99109 1.43372 0.92892 0.94486 1.26005 1.00878
0.94639 0.97820 1.70063 1.34980 1.48691 1.05486 0.85682 0.80270
0.78711 0.78144 1.19205 1.20822 1.17459 0.93571 0.91208 0.92334
0.92041 0.90226 0.93593 0.89360 0.90558 0.90697 0.89623 0.92057
0.90603 0.85722 0.85720 0.92355 0.92406 0.92243 0.92224 0.96636
0.96732 0.92513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.91 7.41 71.98 0.53 -1.37 16
2 C -0.07 -0.98 0.94 -51.46 -0.05 -1.03 16
3 C -0.14 -1.82 8.15 71.98 0.59 -1.23 16
4 C -0.11 -1.19 5.90 31.67 0.19 -1.01 16
5 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16
6 C -0.14 -2.56 6.56 31.67 0.21 -2.35 16
7 C 0.08 1.64 2.85 31.32 0.09 1.73 16
8 H 0.07 1.67 6.72 -2.39 -0.02 1.65 16
9 O -0.34 -8.00 8.01 -51.43 -0.41 -8.41 16
10 C 0.46 12.47 7.95 71.24 0.57 13.04 16
11 O -0.54 -18.28 15.21 21.97 0.33 -17.95 16
12 C -0.11 -2.55 5.81 29.85 0.17 -2.38 16
13 C -0.10 -3.19 4.50 30.59 0.14 -3.05 16
14 C -0.09 -3.56 5.15 30.59 0.16 -3.40 16
15 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16
16 C -0.53 -31.21 9.66 25.60 0.25 -30.97 16
17 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16
18 C 0.00 0.19 5.47 84.65 0.46 0.65 16
19 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16
20 Si 0.95 45.72 27.47 68.60 1.88 47.61 16
21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
23 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16
24 H 0.05 0.79 7.86 -2.39 -0.02 0.77 16
25 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16
26 H 0.06 0.92 7.84 -2.38 -0.02 0.90 16
27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.09 0.70 7.84 -2.39 -0.02 0.68 16
31 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16
32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
35 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16
36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16
37 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16
38 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16
39 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16
40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
42 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16
43 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16
44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
Total: -1.00 -70.17 349.72 6.62 -63.55
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: 0.87 Total: 8.78 kcal
Atomic # 6 Polarization: -36.86 SS G_CDS: 3.64 Total: -33.22 kcal
Atomic # 7 Polarization: -60.65 SS G_CDS: 0.30 Total: -60.35 kcal
Atomic # 8 Polarization: -26.28 SS G_CDS: -0.08 Total: -26.36 kcal
Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal
Total: -70.17 6.62 -63.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805696915.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.217 kcal
(2) G-P(sol) polarization free energy of solvation -70.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds