Wall clock time and date at job start Mon Mar 30 2020 00:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 110.05871 * 2 1 4 4 C 1.54267 * 110.03194 * 238.57955 * 2 1 3 5 5 C 1.54892 * 104.19919 * 217.10791 * 4 2 1 6 6 C 1.54893 * 102.74459 * 37.94434 * 5 4 2 7 7 C 1.53875 * 110.03154 * 121.42074 * 2 1 3 8 8 H 1.08999 * 110.07225 * 238.59395 * 7 2 1 9 9 O 1.45198 * 110.03169 * 359.97438 * 7 2 1 10 10 C 1.34232 * 117.00556 * 208.62392 * 9 7 2 11 11 O 1.20824 * 119.99458 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00401 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46912 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46886 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48495 * 109.46891 * 210.00496 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.08993 * 109.47014 * 298.58616 * 1 2 3 25 25 H 1.09004 * 109.46908 * 58.58472 * 1 2 3 26 26 H 1.09004 * 109.46916 * 178.58139 * 1 2 3 27 27 H 1.09000 * 109.47207 * 181.41357 * 3 2 1 28 28 H 1.08997 * 109.47103 * 301.41536 * 3 2 1 29 29 H 1.09002 * 109.46967 * 61.41737 * 3 2 1 30 30 H 1.09004 * 110.48284 * 98.43162 * 4 2 1 31 31 H 1.09000 * 110.48824 * 335.79138 * 4 2 1 32 32 H 1.09002 * 110.75367 * 279.63228 * 5 4 2 33 33 H 1.08997 * 110.91606 * 156.33438 * 5 4 2 34 34 H 1.08998 * 110.47985 * 203.38079 * 6 5 4 35 35 H 1.08995 * 110.48286 * 80.73799 * 6 5 4 36 36 H 1.08992 * 109.46894 * 60.00099 * 12 10 9 37 37 H 1.09001 * 109.46436 * 299.99819 * 12 10 9 38 38 H 1.09001 * 109.46741 * 59.99975 * 13 12 10 39 39 H 1.09002 * 109.47398 * 300.00078 * 13 12 10 40 40 H 1.09001 * 109.46652 * 60.00345 * 14 13 12 41 41 H 1.08992 * 109.47514 * 300.00434 * 14 13 12 42 42 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 43 43 H 1.09001 * 109.47194 * 60.00677 * 15 14 13 44 44 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3137 -1.5009 -0.7191 6 6 2.8874 -1.9408 0.7036 7 6 2.0571 -0.7536 1.2337 8 1 2.6865 -0.0959 1.8332 9 8 0.9459 -1.2403 2.0315 10 6 1.1553 -1.3746 3.3505 11 8 2.2315 -1.0943 3.8229 12 6 0.0482 -1.8750 4.2423 13 6 0.5456 -1.9350 5.6879 14 6 -0.5785 -2.4424 6.5933 15 6 -0.0813 -2.5019 8.0391 16 6 -1.1884 -3.0022 8.9308 17 1 -2.1502 -3.2531 8.5085 18 6 -0.9734 -3.1397 10.2857 19 7 -1.9393 -3.5768 11.0638 20 14 0.6905 -2.7063 11.0161 21 1 0.6998 -1.2750 11.4116 22 1 0.9420 -3.5518 12.2106 23 1 1.7524 -2.9477 10.0063 24 1 -0.3633 0.4917 0.9023 25 1 -0.3633 0.5357 -0.8771 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7175 1.9470 0.9024 30 1 2.3298 -0.0537 -2.0254 31 1 1.3142 -1.4660 -1.5966 32 1 4.1710 -0.8292 -0.6751 33 1 3.5357 -2.3679 -1.3413 34 1 3.7637 -2.1038 1.3309 35 1 2.2771 -2.8426 0.6571 36 1 -0.2547 -2.8715 3.9210 37 1 -0.8036 -1.1979 4.1785 38 1 0.8489 -0.9387 6.0094 39 1 1.3974 -2.6123 5.7513 40 1 -0.8822 -3.4387 6.2719 41 1 -1.4300 -1.7650 6.5299 42 1 0.7704 -3.1791 8.1029 43 1 0.2220 -1.5054 8.3602 44 1 -1.7881 -3.6731 12.0171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:05 Heat of formation + Delta-G solvation = -148.764647 kcal Electronic energy + Delta-G solvation = -20544.815395 eV Core-core repulsion = 17459.775229 eV Total energy + Delta-G solvation = -3085.040166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81340 -39.74789 -37.15895 -36.59334 -34.65205 -33.21289 -32.07752 -29.37339 -28.26199 -27.73902 -25.53134 -24.13093 -22.18640 -21.74522 -21.33588 -19.92797 -18.90391 -18.60986 -17.42503 -17.19195 -16.32570 -16.24375 -16.14786 -15.63113 -14.91524 -14.67965 -14.46617 -14.15924 -14.01844 -13.88045 -13.76229 -13.43734 -13.28461 -13.09784 -12.88236 -12.58283 -12.38027 -12.18488 -12.14261 -11.99351 -11.76636 -11.71466 -11.58738 -11.47387 -11.41810 -11.40932 -11.32658 -11.26580 -11.15548 -10.76238 -8.29747 -6.33029 1.19946 1.34918 1.36465 1.49026 1.69904 2.35806 3.05750 3.37983 3.50060 3.65648 3.81978 3.94311 4.07519 4.24414 4.26118 4.27226 4.37027 4.38844 4.52733 4.58822 4.65041 4.72437 4.77752 4.80284 4.85597 4.89694 4.95008 5.03307 5.08206 5.08528 5.12813 5.17108 5.20493 5.24989 5.30710 5.39728 5.49666 5.55000 5.59957 5.63684 5.68068 6.29337 6.75124 6.77670 7.31840 8.86952 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041612 B = 0.002916 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.728146 B = 9599.182394 C = 9801.023472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.080 3.920 8 H 0.069 0.931 9 O -0.344 6.344 10 C 0.461 3.539 11 O -0.543 6.543 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.094 4.094 15 C -0.017 4.017 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.251 1.251 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.430 7.760 -29.227 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.181 4.181 7 C 0.026 3.974 8 H 0.087 0.913 9 O -0.260 6.260 10 C 0.306 3.694 11 O -0.433 6.433 12 C -0.143 4.143 13 C -0.139 4.139 14 C -0.132 4.132 15 C -0.054 4.054 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.175 1.175 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.719 7.818 -28.957 31.529 hybrid contribution 0.522 -0.004 1.224 1.331 sum 10.241 7.815 -27.733 30.578 Atomic orbital electron populations 1.21662 0.93009 1.02257 1.01646 1.21353 0.97210 0.95458 0.92651 1.21933 1.01294 0.93992 1.02474 1.22493 0.97078 0.99131 0.95944 1.22427 0.98158 1.00916 0.93915 1.22803 0.99211 0.97726 0.98321 1.23756 0.86144 0.96296 0.91253 0.91295 1.86623 1.43112 1.76904 1.19410 1.24304 0.89370 0.73533 0.82171 1.90636 1.28557 1.48044 1.76101 1.21490 0.95657 1.05344 0.91852 1.21377 0.98337 1.01712 0.92426 1.21327 0.97240 1.00803 0.93789 1.19570 0.95550 0.95972 0.94300 1.21549 0.99109 1.43372 0.92892 0.94486 1.26005 1.00878 0.94639 0.97820 1.70063 1.34980 1.48691 1.05486 0.85682 0.80270 0.78711 0.78144 1.19205 1.20822 1.17459 0.93571 0.91208 0.92334 0.92041 0.90226 0.93593 0.89360 0.90558 0.90697 0.89623 0.92057 0.90603 0.85722 0.85720 0.92355 0.92406 0.92243 0.92224 0.96636 0.96732 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.41 71.98 0.53 -1.37 16 2 C -0.07 -0.98 0.94 -51.46 -0.05 -1.03 16 3 C -0.14 -1.82 8.15 71.98 0.59 -1.23 16 4 C -0.11 -1.19 5.90 31.67 0.19 -1.01 16 5 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16 6 C -0.14 -2.56 6.56 31.67 0.21 -2.35 16 7 C 0.08 1.64 2.85 31.32 0.09 1.73 16 8 H 0.07 1.67 6.72 -2.39 -0.02 1.65 16 9 O -0.34 -8.00 8.01 -51.43 -0.41 -8.41 16 10 C 0.46 12.47 7.95 71.24 0.57 13.04 16 11 O -0.54 -18.28 15.21 21.97 0.33 -17.95 16 12 C -0.11 -2.55 5.81 29.85 0.17 -2.38 16 13 C -0.10 -3.19 4.50 30.59 0.14 -3.05 16 14 C -0.09 -3.56 5.15 30.59 0.16 -3.40 16 15 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16 16 C -0.53 -31.21 9.66 25.60 0.25 -30.97 16 17 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 18 C 0.00 0.19 5.47 84.65 0.46 0.65 16 19 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 20 Si 0.95 45.72 27.47 68.60 1.88 47.61 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 24 H 0.05 0.79 7.86 -2.39 -0.02 0.77 16 25 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 0.92 7.84 -2.38 -0.02 0.90 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.70 7.84 -2.39 -0.02 0.68 16 31 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 43 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -70.17 349.72 6.62 -63.55 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.87 Total: 8.78 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.64 Total: -33.22 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.30 Total: -60.35 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.08 Total: -26.36 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -70.17 6.62 -63.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.217 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds