Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46577 * 2 1 4 4 C 1.52995 * 109.47134 * 240.00321 * 2 1 3 5 5 C 1.52996 * 109.47000 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47512 * 59.99767 * 5 4 2 7 7 C 1.52997 * 109.46663 * 300.00243 * 6 5 4 8 8 H 1.09010 * 109.46939 * 179.97438 * 7 6 5 9 9 O 1.45199 * 109.47493 * 299.99683 * 7 6 5 10 10 C 1.34234 * 116.99947 * 270.00554 * 9 7 6 11 11 O 1.20830 * 119.99848 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99881 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47355 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.52996 * 109.46916 * 119.99714 * 2 1 3 25 25 H 1.08997 * 109.46947 * 299.99711 * 1 2 3 26 26 H 1.08998 * 109.46844 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.46577 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47129 * 299.99843 * 4 2 1 29 29 H 1.08993 * 109.47335 * 59.99769 * 4 2 1 30 30 H 1.08996 * 109.47331 * 179.97438 * 5 4 2 31 31 H 1.09003 * 109.46983 * 299.99850 * 5 4 2 32 32 H 1.08994 * 109.47258 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46929 * 60.00049 * 6 5 4 34 34 H 1.08994 * 109.47211 * 59.99784 * 12 10 9 35 35 H 1.09003 * 109.47615 * 299.99789 * 12 10 9 36 36 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 37 37 H 1.08992 * 109.47494 * 300.00169 * 13 12 10 38 38 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 39 39 H 1.08998 * 109.47285 * 299.99893 * 14 13 12 40 40 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 41 41 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46854 * 60.00459 * 24 2 1 44 44 H 1.08996 * 109.47482 * 300.00514 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2489 6 6 4.0796 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2495 8 1 3.9322 -1.2365 2.1396 9 8 4.0539 0.6467 1.2499 10 6 5.2336 0.8755 1.8482 11 8 5.8410 -0.0377 2.3552 12 6 5.8003 2.2713 1.8875 13 6 7.1423 2.2563 2.6221 14 6 7.7181 3.6733 2.6615 15 6 9.0598 3.6585 3.3966 16 6 9.6265 5.0543 3.4359 17 1 9.0838 5.8705 2.9824 18 6 10.8380 5.2894 4.0509 19 7 11.4987 4.2956 4.6036 20 14 11.5408 7.0195 4.0990 21 1 12.8431 7.0051 4.8126 22 1 11.7411 7.5111 2.7122 23 1 10.5966 7.9176 4.8111 24 6 2.0400 -0.7212 1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6768 -1.7489 -1.2493 29 1 1.6768 -0.2074 -2.1392 30 1 3.9334 -1.2358 -2.1386 31 1 3.9337 0.3059 -1.2486 32 1 5.1695 -1.4433 0.0008 33 1 3.7159 -2.4709 0.0001 34 1 5.1074 2.9301 2.4109 35 1 5.9468 2.6329 0.8697 36 1 7.8354 1.5974 2.0990 37 1 6.9956 1.8950 3.6398 38 1 7.0251 4.3326 3.1843 39 1 7.8651 4.0343 1.6435 40 1 9.7530 2.9990 2.8742 41 1 8.9124 3.2977 4.4145 42 1 12.3511 4.4610 5.0360 43 1 1.6767 -1.7489 1.2492 44 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805864061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -143.540817 kcal Electronic energy + Delta-G solvation = -20399.946798 eV Core-core repulsion = 17315.133154 eV Total energy + Delta-G solvation = -3084.813644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73843 -38.63578 -36.06959 -34.93702 -32.75449 -32.56302 -30.80472 -29.71031 -26.72716 -25.93131 -23.30288 -22.57371 -21.57669 -20.84748 -20.01406 -19.38541 -17.30945 -16.46604 -16.31621 -16.12371 -15.56672 -14.82835 -14.57108 -14.42013 -14.18253 -13.79907 -13.39123 -12.88504 -12.73302 -12.55594 -12.40219 -12.19496 -12.13805 -11.83604 -11.68644 -11.63905 -11.28442 -11.02536 -10.98536 -10.72433 -10.57394 -10.56932 -10.44763 -10.34875 -10.29888 -10.09592 -9.63546 -9.27260 -9.02158 -8.30692 -5.95667 -3.98283 2.36059 2.73513 3.35581 3.39884 3.42236 4.35293 4.37295 4.46327 4.49102 4.73326 4.82432 4.85216 5.07131 5.11271 5.18353 5.26047 5.30608 5.31620 5.35425 5.39741 5.45097 5.52058 5.60952 5.64313 5.74760 5.78732 5.92363 5.93786 5.99563 6.01794 6.07780 6.21219 6.23344 6.46993 6.55705 6.78379 6.96649 7.17454 7.72758 7.88065 7.90649 8.05243 8.46954 9.09124 9.65391 11.15671 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.002702 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.339727 B =10361.970239 C =10551.819972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.087 3.913 8 H 0.083 0.917 9 O -0.352 6.352 10 C 0.458 3.542 11 O -0.507 6.507 12 C -0.112 4.112 13 C -0.108 4.108 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.109 4.109 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.154 -11.099 -10.969 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.173 4.173 7 C 0.032 3.968 8 H 0.101 0.899 9 O -0.269 6.269 10 C 0.301 3.699 11 O -0.394 6.394 12 C -0.150 4.150 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.829 -11.451 -10.722 26.881 hybrid contribution 0.535 0.732 0.143 0.918 sum -21.293 -10.719 -10.579 26.081 Atomic orbital electron populations 1.21840 0.95279 1.01596 1.01767 1.21105 0.95142 1.00612 0.94191 0.90126 1.21593 0.95448 1.00384 0.97605 1.21482 0.95627 1.01445 0.97033 1.21941 1.01468 0.99389 0.94517 1.22665 0.94362 0.80491 0.99246 0.89875 1.86585 1.37059 1.31936 1.71341 1.24195 0.78781 0.92886 0.74026 1.90653 1.59277 1.46340 1.43163 1.21592 0.99271 0.89647 1.04464 1.21565 0.92813 0.99913 1.00271 1.21648 0.99598 0.92883 1.00615 1.19091 0.90329 0.96893 0.95362 1.21242 1.04587 0.94220 1.35920 0.92747 1.25044 0.97085 0.96895 0.95534 1.69965 1.15100 1.30999 1.37443 0.86660 0.78246 0.84941 0.78146 1.21322 1.20262 1.20266 1.21714 0.92327 1.01577 0.99033 0.92653 0.92648 0.92884 0.92194 0.91914 0.91962 0.91227 0.91253 0.90491 0.88017 0.88023 0.91612 0.91598 0.93236 0.93235 0.96568 0.96568 0.92970 0.90179 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.71 2.58 -90.62 -0.23 -0.94 16 3 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 4 C -0.11 -0.82 5.20 -26.74 -0.14 -0.96 16 5 C -0.12 -1.01 5.78 -26.73 -0.15 -1.17 16 6 C -0.14 -1.30 5.65 -26.73 -0.15 -1.45 16 7 C 0.09 0.92 2.75 -26.76 -0.07 0.85 16 8 H 0.08 0.98 7.16 -51.92 -0.37 0.61 16 9 O -0.35 -4.35 8.54 -39.27 -0.34 -4.68 16 10 C 0.46 6.63 7.93 36.00 0.29 6.92 16 11 O -0.51 -8.88 15.20 -18.75 -0.29 -9.17 16 12 C -0.11 -1.53 5.81 -27.89 -0.16 -1.69 16 13 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 14 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.11 -0.89 4.95 -26.76 -0.13 -1.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -31.82 351.96 -9.14 -40.97 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -8.32 Total: -4.67 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -1.23 Total: -17.86 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.62 Total: -13.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.82 -9.14 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.574 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds