Wall clock time and date at job start Mon Mar 30 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46577 * 2 1 4 4 C 1.52995 * 109.47134 * 240.00321 * 2 1 3 5 5 C 1.52996 * 109.47000 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47512 * 59.99767 * 5 4 2 7 7 C 1.52997 * 109.46663 * 300.00243 * 6 5 4 8 8 H 1.09010 * 109.46939 * 179.97438 * 7 6 5 9 9 O 1.45199 * 109.47493 * 299.99683 * 7 6 5 10 10 C 1.34234 * 116.99947 * 270.00554 * 9 7 6 11 11 O 1.20830 * 119.99848 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99881 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47355 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.52996 * 109.46916 * 119.99714 * 2 1 3 25 25 H 1.08997 * 109.46947 * 299.99711 * 1 2 3 26 26 H 1.08998 * 109.46844 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.46577 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47129 * 299.99843 * 4 2 1 29 29 H 1.08993 * 109.47335 * 59.99769 * 4 2 1 30 30 H 1.08996 * 109.47331 * 179.97438 * 5 4 2 31 31 H 1.09003 * 109.46983 * 299.99850 * 5 4 2 32 32 H 1.08994 * 109.47258 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46929 * 60.00049 * 6 5 4 34 34 H 1.08994 * 109.47211 * 59.99784 * 12 10 9 35 35 H 1.09003 * 109.47615 * 299.99789 * 12 10 9 36 36 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 37 37 H 1.08992 * 109.47494 * 300.00169 * 13 12 10 38 38 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 39 39 H 1.08998 * 109.47285 * 299.99893 * 14 13 12 40 40 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 41 41 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46854 * 60.00459 * 24 2 1 44 44 H 1.08996 * 109.47482 * 300.00514 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2489 6 6 4.0796 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2495 8 1 3.9322 -1.2365 2.1396 9 8 4.0539 0.6467 1.2499 10 6 5.2336 0.8755 1.8482 11 8 5.8410 -0.0377 2.3552 12 6 5.8003 2.2713 1.8875 13 6 7.1423 2.2563 2.6221 14 6 7.7181 3.6733 2.6615 15 6 9.0598 3.6585 3.3966 16 6 9.6265 5.0543 3.4359 17 1 9.0838 5.8705 2.9824 18 6 10.8380 5.2894 4.0509 19 7 11.4987 4.2956 4.6036 20 14 11.5408 7.0195 4.0990 21 1 12.8431 7.0051 4.8126 22 1 11.7411 7.5111 2.7122 23 1 10.5966 7.9176 4.8111 24 6 2.0400 -0.7212 1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6768 -1.7489 -1.2493 29 1 1.6768 -0.2074 -2.1392 30 1 3.9334 -1.2358 -2.1386 31 1 3.9337 0.3059 -1.2486 32 1 5.1695 -1.4433 0.0008 33 1 3.7159 -2.4709 0.0001 34 1 5.1074 2.9301 2.4109 35 1 5.9468 2.6329 0.8697 36 1 7.8354 1.5974 2.0990 37 1 6.9956 1.8950 3.6398 38 1 7.0251 4.3326 3.1843 39 1 7.8651 4.0343 1.6435 40 1 9.7530 2.9990 2.8742 41 1 8.9124 3.2977 4.4145 42 1 12.3511 4.4610 5.0360 43 1 1.6767 -1.7489 1.2492 44 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805864061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:32 Heat of formation + Delta-G solvation = -159.157905 kcal Electronic energy + Delta-G solvation = -20400.624006 eV Core-core repulsion = 17315.133154 eV Total energy + Delta-G solvation = -3085.490852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78283 -39.50573 -37.14484 -36.56675 -34.66716 -33.31452 -31.90019 -31.11176 -27.72368 -27.30918 -24.84489 -23.44351 -22.55209 -21.98107 -21.54999 -20.25702 -18.47869 -18.33285 -17.55087 -17.26335 -16.50825 -16.40060 -15.98092 -15.35385 -15.06845 -14.72522 -14.55150 -14.23673 -13.91152 -13.69226 -13.44361 -13.41111 -13.22311 -12.98019 -12.80851 -12.77902 -12.51291 -12.38885 -12.20354 -12.19454 -11.99770 -11.78517 -11.58803 -11.40166 -11.35229 -11.29916 -11.07034 -10.99628 -10.85014 -10.54255 -8.18806 -6.30792 1.21134 1.40690 1.44564 1.52355 1.71416 2.42217 3.14055 3.65609 3.66604 3.69929 3.81735 3.97390 4.07430 4.12189 4.19074 4.31691 4.43192 4.51584 4.56055 4.62785 4.62878 4.77061 4.79545 4.83035 4.85515 4.94682 5.01037 5.02925 5.11455 5.13376 5.25158 5.26840 5.31484 5.32484 5.37262 5.43483 5.53554 5.57972 5.61547 5.77053 5.87705 6.25199 6.78612 6.87527 7.38790 8.93263 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.002702 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.339727 B =10361.970239 C =10551.819972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.079 3.921 8 H 0.067 0.933 9 O -0.345 6.345 10 C 0.462 3.538 11 O -0.545 6.545 12 C -0.104 4.104 13 C -0.099 4.099 14 C -0.096 4.096 15 C 0.019 3.981 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.285 1.285 22 H -0.265 1.265 23 H -0.265 1.265 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.263 0.737 43 H 0.099 0.901 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 -10.032 -12.306 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.172 4.172 7 C 0.025 3.975 8 H 0.085 0.915 9 O -0.262 6.262 10 C 0.307 3.693 11 O -0.435 6.435 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.018 4.018 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.211 1.211 22 H -0.189 1.189 23 H -0.189 1.189 24 C -0.142 4.142 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.004 0.996 41 H 0.005 0.995 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.877 -10.375 -12.080 28.700 hybrid contribution 1.151 0.325 0.562 1.321 sum -22.727 -10.050 -11.518 27.389 Atomic orbital electron populations 1.21803 0.93991 1.02311 1.02013 1.21086 0.96163 0.99654 0.94057 0.91677 1.21580 0.94159 1.01211 0.97680 1.21477 0.96790 1.00443 0.96736 1.21946 1.00061 1.00545 0.94614 1.22934 0.96078 0.79391 0.99105 0.91520 1.86573 1.35862 1.33248 1.70528 1.24295 0.78970 0.92746 0.73301 1.90648 1.60415 1.47524 1.44959 1.21477 0.97249 0.89769 1.05561 1.21341 0.94850 0.97662 0.99871 1.21439 0.96520 0.94896 1.00474 1.19047 0.93125 0.95488 0.94136 1.21731 1.05125 0.95328 1.35908 0.91569 1.26083 0.97584 1.01736 0.94941 1.70122 1.15615 1.33713 1.38376 0.85446 0.77422 0.79081 0.78771 1.21082 1.18926 1.18928 1.21748 0.90132 1.02902 0.99407 0.92713 0.92164 0.91920 0.90915 0.91111 0.91034 0.92712 0.93567 0.88613 0.85461 0.85552 0.93279 0.93212 0.91851 0.91879 0.99564 0.99545 0.92838 0.88250 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.99 0.66 -0.81 16 2 C -0.09 -1.22 2.58 -10.79 -0.03 -1.24 16 3 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 4 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 5 C -0.12 -1.84 5.78 30.59 0.18 -1.66 16 6 C -0.13 -2.47 5.65 30.59 0.17 -2.30 16 7 C 0.08 1.63 2.75 30.58 0.08 1.72 16 8 H 0.07 1.60 7.16 -2.38 -0.02 1.58 16 9 O -0.35 -8.30 8.54 -51.46 -0.44 -8.74 16 10 C 0.46 13.26 7.93 71.23 0.56 13.83 16 11 O -0.55 -19.64 15.20 21.95 0.33 -19.31 16 12 C -0.10 -2.67 5.81 29.85 0.17 -2.49 16 13 C -0.10 -3.52 4.50 30.59 0.14 -3.39 16 14 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 19 N -0.94 -58.96 13.29 21.45 0.28 -58.68 16 20 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.10 -1.53 4.95 30.58 0.15 -1.38 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -70.31 351.96 6.39 -63.93 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.92 Total: 8.50 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.26 Total: -32.50 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.11 Total: -28.05 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.31 6.39 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.229 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds