Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.52993 * 109.46931 * 240.00431 * 2 1 3 5 5 C 1.52996 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46893 * 60.00411 * 5 4 2 7 7 C 1.53002 * 109.46722 * 299.99815 * 6 5 4 8 8 H 1.09000 * 109.46981 * 300.00437 * 7 6 5 9 9 O 1.45196 * 109.47146 * 180.02562 * 7 6 5 10 10 C 1.34231 * 117.00262 * 89.99798 * 9 7 6 11 11 O 1.20828 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00154 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47197 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47074 * 119.99839 * 20 18 16 23 23 H 1.48497 * 109.47111 * 239.99631 * 20 18 16 24 24 C 1.52996 * 109.47177 * 120.00393 * 2 1 3 25 25 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99563 * 1 2 3 27 27 H 1.08995 * 109.47110 * 59.99519 * 1 2 3 28 28 H 1.08998 * 109.47180 * 59.99561 * 4 2 1 29 29 H 1.09006 * 109.47562 * 300.00225 * 4 2 1 30 30 H 1.08995 * 109.47244 * 300.00234 * 5 4 2 31 31 H 1.09000 * 109.47541 * 179.97438 * 5 4 2 32 32 H 1.09003 * 109.47184 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47320 * 59.99870 * 6 5 4 34 34 H 1.09000 * 109.47247 * 60.00272 * 12 10 9 35 35 H 1.09001 * 109.47358 * 299.99698 * 12 10 9 36 36 H 1.08993 * 109.46955 * 300.00219 * 13 12 10 37 37 H 1.09000 * 109.47050 * 60.00048 * 13 12 10 38 38 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 39 39 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 40 40 H 1.09004 * 109.47107 * 300.00294 * 15 14 13 41 41 H 1.09000 * 109.46866 * 60.00185 * 15 14 13 42 42 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47465 * 59.99877 * 24 2 1 44 44 H 1.09003 * 109.47118 * 300.00062 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5699 -0.7206 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2486 9 8 4.0554 -1.4044 2.4343 10 6 5.2350 -1.0003 2.9313 11 8 5.8421 -0.1045 2.3939 12 6 5.8023 -1.6640 4.1597 13 6 7.1443 -1.0199 4.5136 14 6 7.7198 -1.6933 5.7611 15 6 9.0615 -1.0488 6.1154 16 6 9.6287 -1.7125 7.3438 17 1 9.0867 -2.5141 7.8235 18 6 10.8396 -1.2964 7.8552 19 7 11.4999 -0.3205 7.2707 20 14 11.5431 -2.1195 9.3774 21 1 10.6138 -3.1812 9.8401 22 1 12.8604 -2.7220 9.0502 23 1 11.7141 -1.1091 10.4521 24 6 2.0401 -0.7213 1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6766 -0.2073 -2.1392 29 1 1.6766 -1.7488 -1.2494 30 1 3.9329 0.3071 -1.2498 31 1 3.9333 -1.2348 -2.1394 32 1 5.1705 -1.4410 -0.0005 33 1 3.7175 -2.4694 -0.0003 34 1 5.9490 -2.7262 3.9638 35 1 5.1096 -1.5403 4.9922 36 1 7.8371 -1.1431 3.6813 37 1 6.9971 0.0422 4.7096 38 1 7.0268 -1.5697 6.5932 39 1 7.8669 -2.7555 5.5655 40 1 9.7548 -1.1721 5.2834 41 1 8.9139 0.0132 6.3112 42 1 12.3516 -0.0276 7.6307 43 1 1.6767 -1.7490 1.2492 44 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805864063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -145.239353 kcal Electronic energy + Delta-G solvation = -20127.377872 eV Core-core repulsion = 17042.490574 eV Total energy + Delta-G solvation = -3084.887298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67656 -38.73405 -36.32156 -34.94438 -32.80221 -32.61086 -30.72970 -29.66888 -26.77862 -25.92953 -23.39595 -22.48284 -21.63806 -20.42276 -20.08821 -19.94486 -17.46230 -16.43741 -16.30276 -16.16069 -15.44583 -14.80670 -14.71598 -14.46524 -14.35284 -13.74741 -13.57518 -12.93274 -12.78627 -12.65861 -12.46047 -12.22527 -11.99995 -11.75485 -11.64883 -11.43931 -11.34061 -11.01329 -11.01054 -10.97226 -10.74318 -10.58734 -10.51806 -10.45194 -10.27858 -10.13518 -9.64000 -9.27535 -8.99914 -8.31378 -5.95990 -3.98457 2.34663 2.67762 3.33216 3.40464 3.44573 4.27134 4.32828 4.42460 4.49123 4.66685 4.75103 4.80561 5.00121 5.07974 5.12237 5.20575 5.25590 5.27717 5.30555 5.38673 5.39604 5.44538 5.60100 5.63655 5.66885 5.78594 5.84669 5.86105 5.88860 5.93115 6.07439 6.08024 6.22693 6.46936 6.55461 6.78395 6.96637 7.17440 7.73203 7.87939 7.89038 8.05090 8.46872 9.09392 9.65389 11.15399 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.056388 B = 0.002485 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.436960 B =11264.229156 C =11454.856733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.135 4.135 7 C 0.087 3.913 8 H 0.084 0.916 9 O -0.358 6.358 10 C 0.459 3.541 11 O -0.506 6.506 12 C -0.112 4.112 13 C -0.108 4.108 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.110 4.110 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 -1.590 -16.618 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.032 3.968 8 H 0.102 0.898 9 O -0.276 6.276 10 C 0.302 3.698 11 O -0.393 6.393 12 C -0.150 4.150 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.954 -1.209 -16.795 27.668 hybrid contribution 0.570 -0.293 0.759 0.994 sum -21.384 -1.503 -16.036 26.771 Atomic orbital electron populations 1.21808 0.94591 1.02037 1.01891 1.21104 0.95873 0.99758 0.94127 0.90875 1.21658 0.95403 1.00929 0.97471 1.21483 0.95590 1.01082 0.97246 1.21938 1.01462 1.00180 0.93740 1.22715 0.94352 0.97148 0.82547 0.89844 1.86574 1.37293 1.60566 1.43123 1.24204 0.78659 0.81339 0.85604 1.90654 1.59224 1.29361 1.60040 1.21606 0.99282 1.01557 0.92542 1.21570 0.92791 1.00318 0.99887 1.21649 0.99599 0.99149 0.94356 1.19106 0.90343 0.95982 0.96342 1.21313 1.04554 1.18418 1.11484 0.92635 1.25050 0.97110 0.95184 0.97298 1.69985 1.15108 1.28029 1.40374 0.86544 0.78976 0.79403 0.83121 1.19755 1.21052 1.21055 1.21671 0.92456 1.02131 0.98488 0.92497 0.92484 0.92452 0.91648 0.91645 0.91593 0.91277 0.91235 0.90960 0.87958 0.87963 0.91588 0.91586 0.93215 0.93218 0.96553 0.96544 0.93091 0.90709 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.63 2.72 -90.62 -0.25 -0.87 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.77 5.20 -26.74 -0.14 -0.91 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 6 C -0.14 -1.33 5.56 -26.73 -0.15 -1.48 16 7 C 0.09 0.96 2.45 -26.71 -0.07 0.89 16 8 H 0.08 1.03 7.15 -51.93 -0.37 0.66 16 9 O -0.36 -4.65 9.88 -39.26 -0.39 -5.04 16 10 C 0.46 6.79 7.93 36.01 0.29 7.08 16 11 O -0.51 -8.96 15.20 -18.75 -0.29 -9.25 16 12 C -0.11 -1.55 5.81 -27.88 -0.16 -1.71 16 13 C -0.11 -1.91 4.51 -26.73 -0.12 -2.03 16 14 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.11 -0.93 4.87 -26.71 -0.13 -1.06 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -31.99 354.05 -9.22 -41.21 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -8.36 Total: -4.96 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.23 Total: -17.43 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.67 Total: -14.28 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.99 -9.22 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.032 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds