Wall clock time and date at job start Mon Mar 30 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.52993 * 109.46931 * 240.00431 * 2 1 3 5 5 C 1.52996 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46893 * 60.00411 * 5 4 2 7 7 C 1.53002 * 109.46722 * 299.99815 * 6 5 4 8 8 H 1.09000 * 109.46981 * 300.00437 * 7 6 5 9 9 O 1.45196 * 109.47146 * 180.02562 * 7 6 5 10 10 C 1.34231 * 117.00262 * 89.99798 * 9 7 6 11 11 O 1.20828 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00154 * 180.02562 * 10 9 7 13 13 C 1.53006 * 109.46866 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47197 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47074 * 119.99839 * 20 18 16 23 23 H 1.48497 * 109.47111 * 239.99631 * 20 18 16 24 24 C 1.52996 * 109.47177 * 120.00393 * 2 1 3 25 25 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99563 * 1 2 3 27 27 H 1.08995 * 109.47110 * 59.99519 * 1 2 3 28 28 H 1.08998 * 109.47180 * 59.99561 * 4 2 1 29 29 H 1.09006 * 109.47562 * 300.00225 * 4 2 1 30 30 H 1.08995 * 109.47244 * 300.00234 * 5 4 2 31 31 H 1.09000 * 109.47541 * 179.97438 * 5 4 2 32 32 H 1.09003 * 109.47184 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47320 * 59.99870 * 6 5 4 34 34 H 1.09000 * 109.47247 * 60.00272 * 12 10 9 35 35 H 1.09001 * 109.47358 * 299.99698 * 12 10 9 36 36 H 1.08993 * 109.46955 * 300.00219 * 13 12 10 37 37 H 1.09000 * 109.47050 * 60.00048 * 13 12 10 38 38 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 39 39 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 40 40 H 1.09004 * 109.47107 * 300.00294 * 15 14 13 41 41 H 1.09000 * 109.46866 * 60.00185 * 15 14 13 42 42 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47465 * 59.99877 * 24 2 1 44 44 H 1.09003 * 109.47118 * 300.00062 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5699 -0.7206 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2486 9 8 4.0554 -1.4044 2.4343 10 6 5.2350 -1.0003 2.9313 11 8 5.8421 -0.1045 2.3939 12 6 5.8023 -1.6640 4.1597 13 6 7.1443 -1.0199 4.5136 14 6 7.7198 -1.6933 5.7611 15 6 9.0615 -1.0488 6.1154 16 6 9.6287 -1.7125 7.3438 17 1 9.0867 -2.5141 7.8235 18 6 10.8396 -1.2964 7.8552 19 7 11.4999 -0.3205 7.2707 20 14 11.5431 -2.1195 9.3774 21 1 10.6138 -3.1812 9.8401 22 1 12.8604 -2.7220 9.0502 23 1 11.7141 -1.1091 10.4521 24 6 2.0401 -0.7213 1.2492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6766 -0.2073 -2.1392 29 1 1.6766 -1.7488 -1.2494 30 1 3.9329 0.3071 -1.2498 31 1 3.9333 -1.2348 -2.1394 32 1 5.1705 -1.4410 -0.0005 33 1 3.7175 -2.4694 -0.0003 34 1 5.9490 -2.7262 3.9638 35 1 5.1096 -1.5403 4.9922 36 1 7.8371 -1.1431 3.6813 37 1 6.9971 0.0422 4.7096 38 1 7.0268 -1.5697 6.5932 39 1 7.8669 -2.7555 5.5655 40 1 9.7548 -1.1721 5.2834 41 1 8.9139 0.0132 6.3112 42 1 12.3516 -0.0276 7.6307 43 1 1.6767 -1.7490 1.2492 44 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805864063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:35 Heat of formation + Delta-G solvation = -160.994441 kcal Electronic energy + Delta-G solvation = -20128.061064 eV Core-core repulsion = 17042.490574 eV Total energy + Delta-G solvation = -3085.570490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75890 -39.55067 -37.40989 -36.61181 -34.67024 -33.38275 -31.90164 -31.01388 -27.72188 -27.34036 -24.88843 -23.40886 -22.66122 -21.79521 -21.37323 -20.73269 -18.63362 -18.37457 -17.47509 -17.43957 -16.50108 -16.20769 -15.98420 -15.47931 -15.19638 -14.67709 -14.59292 -14.41617 -13.96677 -13.76826 -13.51275 -13.37263 -13.33418 -12.89887 -12.84489 -12.78577 -12.33889 -12.23195 -12.20967 -12.17789 -11.97291 -11.85182 -11.69873 -11.43900 -11.41785 -11.40303 -11.25132 -11.01170 -10.91096 -10.55700 -8.19124 -6.30885 1.17687 1.40792 1.41455 1.55017 1.64423 2.41944 3.13885 3.56254 3.62341 3.63678 3.87896 3.97258 4.04477 4.07784 4.11089 4.24832 4.38360 4.43280 4.51918 4.58418 4.62744 4.72066 4.76813 4.81007 4.84942 4.90675 4.98161 4.98996 5.05928 5.13245 5.17947 5.23374 5.29775 5.31694 5.33015 5.36889 5.47333 5.54443 5.57670 5.77055 5.87833 6.25142 6.74559 6.87800 7.38766 8.93317 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.056388 B = 0.002485 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.436960 B =11264.229156 C =11454.856733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.080 3.920 8 H 0.064 0.936 9 O -0.354 6.354 10 C 0.462 3.538 11 O -0.544 6.544 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.104 4.104 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.263 0.737 43 H 0.083 0.917 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.256 -3.344 -16.332 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.026 3.974 8 H 0.082 0.918 9 O -0.271 6.271 10 C 0.307 3.693 11 O -0.434 6.434 12 C -0.140 4.140 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.970 -2.981 -16.516 29.261 hybrid contribution 1.185 0.293 0.618 1.368 sum -22.785 -2.687 -15.898 27.913 Atomic orbital electron populations 1.21781 0.93279 1.02576 1.02361 1.21115 0.96871 0.99219 0.93550 0.91537 1.21647 0.94076 1.01557 0.97753 1.21492 0.96778 1.00413 0.96536 1.21934 1.00063 1.00905 0.94199 1.22983 0.96094 0.96090 0.82276 0.91813 1.86555 1.36237 1.60434 1.43837 1.24348 0.78783 0.80608 0.85533 1.90650 1.60331 1.31122 1.61255 1.21502 0.97272 1.02246 0.93009 1.21347 0.94821 0.99521 0.98062 1.21440 0.96515 0.99411 0.95968 1.19064 0.93151 0.94749 0.94948 1.21780 1.05061 1.18743 1.12192 0.91558 1.26090 0.97631 0.95778 1.00975 1.70134 1.15677 1.29684 1.42351 0.85333 0.78263 0.78548 0.78498 1.18121 1.20503 1.20500 1.21688 0.90199 1.02894 0.99383 0.91899 0.92519 0.91553 0.90276 0.90817 0.92435 0.90154 0.93518 0.89971 0.85359 0.85330 0.93232 0.93214 0.91809 0.91822 0.99539 0.99519 0.92861 0.89848 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.19 71.98 0.66 -0.66 16 2 C -0.09 -1.09 2.72 -10.80 -0.03 -1.12 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.25 5.20 30.59 0.16 -1.09 16 5 C -0.11 -1.67 5.92 30.59 0.18 -1.49 16 6 C -0.13 -2.57 5.56 30.60 0.17 -2.40 16 7 C 0.08 1.74 2.45 30.61 0.08 1.81 16 8 H 0.06 1.64 7.15 -2.39 -0.02 1.62 16 9 O -0.35 -8.86 9.88 -51.43 -0.51 -9.37 16 10 C 0.46 13.52 7.93 71.24 0.56 14.08 16 11 O -0.54 -19.85 15.20 21.96 0.33 -19.52 16 12 C -0.10 -2.67 5.81 29.85 0.17 -2.49 16 13 C -0.10 -3.53 4.51 30.60 0.14 -3.39 16 14 C -0.10 -3.86 5.15 30.60 0.16 -3.71 16 15 C 0.02 0.98 4.97 29.85 0.15 1.13 16 16 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 19 N -0.94 -58.92 13.29 21.45 0.28 -58.63 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.10 -1.62 4.87 30.61 0.15 -1.48 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 37 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.55 354.05 6.30 -64.24 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.92 Total: 8.17 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.24 Total: -31.77 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.17 Total: -28.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.55 6.30 -64.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.750 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds