Wall clock time and date at job start Mon Mar 30 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46923 * 2 1 4 4 C 1.52994 * 109.47242 * 120.00031 * 2 1 3 5 5 C 1.53001 * 109.47334 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46872 * 299.99771 * 5 4 2 7 7 C 1.53003 * 109.46827 * 60.00000 * 6 5 4 8 8 H 1.08995 * 109.46990 * 60.00068 * 7 6 5 9 9 O 1.45198 * 109.46946 * 179.97438 * 7 6 5 10 10 C 1.34230 * 117.00173 * 270.00291 * 9 7 6 11 11 O 1.20818 * 119.99983 * 0.27497 * 10 9 7 12 12 C 1.50706 * 119.99763 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.46573 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47481 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47432 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00335 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47148 * 120.00633 * 20 18 16 23 23 H 1.48497 * 109.47025 * 240.00429 * 20 18 16 24 24 C 1.52995 * 109.47144 * 240.00369 * 2 1 3 25 25 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00161 * 1 2 3 27 27 H 1.09009 * 109.47300 * 60.00153 * 1 2 3 28 28 H 1.08999 * 109.47238 * 300.00299 * 4 2 1 29 29 H 1.09000 * 109.47359 * 60.00380 * 4 2 1 30 30 H 1.08995 * 109.47368 * 59.99963 * 5 4 2 31 31 H 1.08996 * 109.47145 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.47162 * 300.00528 * 6 5 4 33 33 H 1.08999 * 109.46880 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47161 * 299.99883 * 12 10 9 35 35 H 1.09001 * 109.46740 * 60.00026 * 12 10 9 36 36 H 1.09000 * 109.47486 * 299.99934 * 13 12 10 37 37 H 1.09001 * 109.47362 * 60.00657 * 13 12 10 38 38 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 39 39 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 40 40 H 1.09004 * 109.46672 * 300.00239 * 15 14 13 41 41 H 1.08996 * 109.47340 * 59.99477 * 15 14 13 42 42 H 0.96996 * 119.99943 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47596 * 60.00120 * 24 2 1 44 44 H 1.09003 * 109.47531 * 299.99341 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 6 3.5704 -0.7203 -1.2490 8 1 3.9334 0.3074 -1.2487 9 8 4.0553 -1.4041 -2.4345 10 6 5.2349 -1.0000 -2.9315 11 8 5.8445 -0.1079 -2.3909 12 6 5.8021 -1.6636 -4.1600 13 6 7.1440 -1.0195 -4.5138 14 6 7.7197 -1.6928 -5.7614 15 6 9.0619 -1.0492 -6.1150 16 6 9.6291 -1.7128 -7.3434 17 1 9.0867 -2.5137 -7.8236 18 6 10.8405 -1.2973 -7.8542 19 7 11.5013 -0.3222 -7.2691 20 14 11.5439 -2.1203 -9.3765 21 1 10.6140 -3.1813 -9.8400 22 1 11.7162 -1.1096 -10.4507 23 1 12.8606 -2.7239 -9.0491 24 6 2.0400 -0.7211 -1.2492 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.6766 -0.2075 2.1392 29 1 1.6767 -1.7489 1.2492 30 1 3.9330 0.3071 1.2498 31 1 3.9333 -1.2349 2.1392 32 1 3.7174 -2.4694 0.0000 33 1 5.1705 -1.4408 0.0003 34 1 5.9489 -2.7258 -3.9641 35 1 5.1093 -1.5399 -4.9923 36 1 6.9969 0.0426 -4.7098 37 1 7.8370 -1.1429 -3.6816 38 1 7.8668 -2.7550 -5.5659 39 1 7.0266 -1.5692 -6.5935 40 1 8.9151 0.0131 -6.3103 41 1 9.7547 -1.1732 -5.2828 42 1 12.3537 -0.0302 -7.6283 43 1 1.6767 -0.2073 -2.1392 44 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805864064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:37 Heat of formation + Delta-G solvation = -160.990841 kcal Electronic energy + Delta-G solvation = -20128.180216 eV Core-core repulsion = 17042.609882 eV Total energy + Delta-G solvation = -3085.570334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75991 -39.55088 -37.41015 -36.61249 -34.67011 -33.38292 -31.90193 -31.01410 -27.72145 -27.33998 -24.88838 -23.40888 -22.66105 -21.79499 -21.37358 -20.73240 -18.63339 -18.37474 -17.47489 -17.44002 -16.50106 -16.20799 -15.98414 -15.47940 -15.19618 -14.67703 -14.59320 -14.41605 -13.96708 -13.76807 -13.51297 -13.37270 -13.33424 -12.89885 -12.84508 -12.78587 -12.33880 -12.23168 -12.21002 -12.17715 -11.97267 -11.85089 -11.70001 -11.43899 -11.41792 -11.40286 -11.25123 -11.01163 -10.91110 -10.55693 -8.19143 -6.30884 1.17750 1.40783 1.41457 1.55014 1.64435 2.41945 3.13870 3.56237 3.62369 3.63676 3.87924 3.97282 4.04455 4.07782 4.11078 4.24810 4.38360 4.43288 4.51919 4.58445 4.62734 4.72071 4.76798 4.81013 4.84951 4.90672 4.98160 4.99007 5.05944 5.13229 5.17948 5.23380 5.29804 5.31685 5.33019 5.36892 5.47342 5.54442 5.57673 5.77048 5.87832 6.25154 6.74593 6.87802 7.38750 8.93296 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.056393 B = 0.002485 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.396659 B =11264.000811 C =11455.115885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.080 3.920 8 H 0.064 0.936 9 O -0.354 6.354 10 C 0.462 3.538 11 O -0.544 6.544 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.104 4.104 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.265 -3.330 16.320 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.026 3.974 8 H 0.082 0.918 9 O -0.271 6.271 10 C 0.307 3.693 11 O -0.433 6.433 12 C -0.140 4.140 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.978 -2.968 16.504 29.260 hybrid contribution 1.186 0.293 -0.617 1.368 sum -22.793 -2.676 15.887 27.912 Atomic orbital electron populations 1.21781 0.93279 1.02576 1.02362 1.21114 0.96871 0.99220 0.93549 0.91536 1.21647 0.94074 1.01555 0.97755 1.21493 0.96779 1.00413 0.96535 1.21934 1.00063 1.00902 0.94202 1.22983 0.96093 0.96084 0.82276 0.91817 1.86555 1.36280 1.60396 1.43836 1.24347 0.78793 0.80552 0.85582 1.90647 1.60224 1.31313 1.61163 1.21501 0.97265 1.02234 0.93024 1.21349 0.94824 0.99521 0.98061 1.21439 0.96508 0.99413 0.95971 1.19060 0.93150 0.94749 0.94951 1.21779 1.05031 1.18782 1.12184 0.91559 1.26091 0.97636 0.95776 1.00975 1.70136 1.15614 1.29729 1.42365 0.85333 0.78263 0.78546 0.78496 1.18120 1.20499 1.20502 1.21689 0.90197 1.02894 0.99383 0.91900 0.91554 0.92517 0.90275 0.90819 0.92435 0.90157 0.89975 0.93519 0.85356 0.85335 0.93211 0.93235 0.91832 0.91801 0.99523 0.99538 0.92862 0.91120 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.19 71.98 0.66 -0.66 16 2 C -0.09 -1.09 2.72 -10.80 -0.03 -1.12 16 3 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 4 C -0.11 -1.25 5.20 30.59 0.16 -1.09 16 5 C -0.11 -1.68 5.92 30.60 0.18 -1.49 16 6 C -0.13 -2.57 5.56 30.60 0.17 -2.40 16 7 C 0.08 1.74 2.45 30.61 0.08 1.81 16 8 H 0.06 1.64 7.16 -2.39 -0.02 1.62 16 9 O -0.35 -8.86 9.88 -51.41 -0.51 -9.37 16 10 C 0.46 13.52 7.93 71.24 0.56 14.08 16 11 O -0.54 -19.85 15.20 21.99 0.33 -19.51 16 12 C -0.10 -2.67 5.81 29.85 0.17 -2.49 16 13 C -0.10 -3.53 4.50 30.60 0.14 -3.39 16 14 C -0.10 -3.86 5.15 30.59 0.16 -3.71 16 15 C 0.02 0.98 4.97 29.84 0.15 1.13 16 16 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 19 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 C -0.10 -1.62 4.87 30.61 0.15 -1.48 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 37 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.55 354.05 6.30 -64.24 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.92 Total: 8.17 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.24 Total: -31.77 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.17 Total: -28.89 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.55 6.30 -64.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.748 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds