Wall clock time and date at job start Mon Mar 30 2020 01:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99506 * 2 1 4 4 H 1.48511 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47187 * 299.99700 * 3 2 1 6 6 H 1.48500 * 109.47343 * 60.00174 * 3 2 1 7 7 C 1.37876 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99701 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.47732 * 299.99941 * 9 7 2 11 11 O 1.42904 * 109.46981 * 60.00538 * 9 7 2 12 12 C 1.53001 * 109.46965 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47131 * 180.02562 * 12 9 7 14 14 C 1.46962 * 110.99658 * 293.79667 * 13 12 9 15 15 C 1.53051 * 109.36446 * 176.81502 * 14 13 12 16 16 N 1.46952 * 109.36448 * 58.39918 * 15 14 13 17 17 C 1.46896 * 110.99790 * 176.80982 * 16 15 14 18 18 C 1.54260 * 110.03773 * 304.61627 * 17 16 15 19 19 C 1.54890 * 104.19998 * 217.10581 * 18 17 16 20 20 C 1.54892 * 102.74543 * 37.94184 * 19 18 17 21 21 C 1.53882 * 110.03283 * 187.44806 * 17 16 15 22 22 C 1.46950 * 110.88417 * 300.68250 * 16 15 14 23 23 C 1.46958 * 110.99821 * 170.00122 * 13 12 9 24 24 H 0.97005 * 120.00726 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00183 * 59.99379 * 11 9 7 26 26 H 1.09001 * 109.47214 * 300.00076 * 12 9 7 27 27 H 1.08993 * 109.47143 * 60.00063 * 12 9 7 28 28 H 1.08999 * 109.48705 * 296.78502 * 14 13 12 29 29 H 1.08999 * 109.48551 * 56.84662 * 14 13 12 30 30 H 1.08999 * 109.48738 * 298.43409 * 15 14 13 31 31 H 1.08994 * 109.50210 * 178.38356 * 15 14 13 32 32 H 1.09004 * 110.01720 * 66.06162 * 17 16 15 33 33 H 1.09001 * 110.48364 * 335.78208 * 18 17 16 34 34 H 1.08996 * 110.48841 * 98.42234 * 18 17 16 35 35 H 1.09005 * 110.75375 * 279.62495 * 19 18 17 36 36 H 1.09004 * 110.75841 * 156.25640 * 19 18 17 37 37 H 1.09007 * 110.48116 * 203.38269 * 20 19 18 38 38 H 1.08991 * 110.48537 * 80.73931 * 20 19 18 39 39 H 1.09002 * 110.03463 * 238.57113 * 21 17 16 40 40 H 1.08995 * 110.03059 * 359.95449 * 21 17 16 41 41 H 1.09007 * 109.48994 * 299.35561 * 22 16 15 42 42 H 1.08998 * 109.49461 * 179.29052 * 22 16 15 43 43 H 1.08992 * 109.48821 * 303.14967 * 23 13 12 44 44 H 1.08999 * 109.49103 * 63.21750 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5564 0.8919 11 8 0.4291 -2.5756 -1.1648 12 6 2.2453 -3.6620 0.0015 13 7 1.5109 -4.9343 0.0020 14 6 0.7687 -5.1133 1.2577 15 6 -0.0438 -6.4084 1.1867 16 7 0.8629 -7.5400 0.9482 17 6 0.1284 -8.8122 0.9489 18 6 -0.6579 -8.9678 2.2669 19 6 -0.5528 -10.4777 2.5960 20 6 0.8948 -10.8214 2.1653 21 6 1.1156 -9.9908 0.8843 22 6 1.6051 -7.3610 -0.3074 23 6 2.4176 -6.0659 -0.2365 24 1 -0.4851 0.8400 -0.0004 25 1 0.9210 -2.5308 -1.9962 26 1 2.8713 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8909 28 1 1.4703 -5.1693 2.0900 29 1 0.0953 -4.2691 1.4056 30 1 -0.7642 -6.3415 0.3714 31 1 -0.5727 -6.5582 2.1279 32 1 -0.5538 -8.8496 0.0996 33 1 -0.2000 -8.3725 3.0569 34 1 -1.6996 -8.6797 2.1260 35 1 -1.2752 -11.0509 2.0148 36 1 -0.6897 -10.6509 3.6635 37 1 0.9861 -11.8861 1.9501 38 1 1.6033 -10.5254 2.9388 39 1 0.9120 -10.6007 0.0041 40 1 2.1396 -9.6188 0.8516 41 1 0.9034 -7.3049 -1.1397 42 1 2.2785 -8.2052 -0.4554 43 1 2.9462 -5.9162 -1.1778 44 1 3.1380 -6.1328 0.5788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809571959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:39 Heat of formation + Delta-G solvation = -48.191590 kcal Electronic energy + Delta-G solvation = -21430.050236 eV Core-core repulsion = 18381.663996 eV Total energy + Delta-G solvation = -3048.386240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60558 -37.62129 -35.59904 -33.66171 -32.04094 -30.88702 -29.24679 -28.68192 -27.36751 -25.27078 -23.50861 -23.18874 -20.60185 -20.40974 -19.73870 -19.31483 -17.09990 -16.49214 -15.72433 -14.84888 -14.75437 -14.61067 -14.48822 -14.32406 -14.00093 -13.63826 -13.51194 -13.37101 -12.89671 -12.41903 -11.91000 -11.65328 -11.52050 -11.23991 -11.18048 -11.10029 -10.95824 -10.93435 -10.87133 -10.79752 -10.67668 -10.63227 -10.34264 -10.22936 -9.96054 -8.93847 -8.54122 -8.22150 -8.03822 -7.57733 -5.98021 -4.16128 3.27987 3.36169 3.39500 3.95277 4.35114 4.43443 4.53048 4.55676 4.82495 5.15826 5.25281 5.29590 5.31376 5.38598 5.39331 5.52520 5.56342 5.57690 5.65247 5.71606 5.76804 5.77213 5.86225 5.91906 5.96701 6.05834 6.11794 6.16036 6.17968 6.22359 6.31325 6.39105 6.44630 6.62263 6.85564 7.19452 7.23205 7.60266 7.69561 7.81911 7.91990 8.23831 8.88175 9.49437 9.65917 11.06085 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046160 B = 0.003633 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.437181 B = 7705.964554 C = 7930.494526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.032 3.968 13 N -0.528 5.528 14 C 0.059 3.941 15 C 0.058 3.942 16 N -0.533 5.533 17 C 0.080 3.920 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.119 4.119 22 C 0.059 3.941 23 C 0.056 3.944 24 H 0.259 0.741 25 H 0.342 0.658 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -19.517 2.771 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.253 5.253 14 C -0.069 4.069 15 C -0.069 4.069 16 N -0.259 5.259 17 C -0.029 4.029 18 C -0.157 4.157 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.070 4.070 23 C -0.073 4.073 24 H 0.069 0.931 25 H 0.185 0.815 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.454 -19.447 3.227 19.719 hybrid contribution 1.033 1.070 -0.395 1.539 sum 1.487 -18.377 2.832 18.653 Atomic orbital electron populations 1.70092 1.05897 1.26237 1.47217 1.25024 0.94680 0.99063 0.93899 0.86631 0.80215 0.83933 0.77667 1.19754 1.20879 1.20924 1.21705 0.93179 0.91657 1.54633 0.92719 1.19317 0.87793 0.88542 0.86450 0.92855 1.86554 1.37741 1.96314 1.14974 1.23062 0.97231 0.89816 0.99471 1.62184 1.27155 1.01886 1.34043 1.22136 0.97374 0.96881 0.90515 1.22177 0.94226 0.89813 1.00726 1.62357 1.27476 1.01575 1.34474 1.22275 0.93967 0.89563 0.97079 1.22472 0.99407 0.96453 0.97360 1.22465 0.96877 0.96005 1.00803 1.22299 0.96867 0.99043 0.97552 1.22225 1.00238 0.95550 0.97636 1.22150 0.97081 0.97318 0.90406 1.22122 0.94194 0.90541 1.00405 0.93089 0.81512 0.91965 0.95587 0.94993 0.89398 0.94054 0.90624 0.94181 0.90347 0.91893 0.91762 0.91627 0.92077 0.91517 0.92187 0.90709 0.94230 0.90874 0.90939 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 12.84 55.43 0.71 -24.86 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.24 6.06 2.71 -27.88 -0.08 5.99 16 10 H 0.05 1.50 6.49 -51.93 -0.34 1.16 16 11 O -0.55 -14.64 12.59 -35.23 -0.44 -15.08 16 12 C 0.03 0.67 4.56 -3.82 -0.02 0.65 16 13 N -0.53 -9.91 4.58 -234.46 -1.07 -10.98 16 14 C 0.06 1.06 5.41 -3.76 -0.02 1.04 16 15 C 0.06 0.88 5.32 -3.77 -0.02 0.86 16 16 N -0.53 -7.26 4.47 -225.16 -1.01 -8.26 16 17 C 0.08 0.91 2.67 -66.60 -0.18 0.73 16 18 C -0.12 -1.22 5.12 -25.07 -0.13 -1.35 16 19 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 20 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 21 C -0.12 -1.16 5.92 -25.61 -0.15 -1.31 16 22 C 0.06 0.80 5.36 -3.77 -0.02 0.78 16 23 C 0.06 0.88 5.61 -3.76 -0.02 0.85 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.34 8.16 9.04 45.56 0.41 8.57 16 26 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 27 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.76 6.34 -51.93 -0.33 1.43 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.02 6.53 -51.93 -0.34 0.69 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.88 7.45 -51.93 -0.39 0.49 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.79 6.65 -51.93 -0.35 0.44 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.86 6.48 -51.93 -0.34 0.52 16 43 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.12 334.70 -10.27 -40.39 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.11 Total: 5.70 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.37 Total: -8.20 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -1.37 Total: -44.11 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.44 Total: -15.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.12 -10.27 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.798 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds