Wall clock time and date at job start Mon Mar 30 2020 01:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99506 * 2 1 4 4 H 1.48511 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47187 * 299.99700 * 3 2 1 6 6 H 1.48500 * 109.47343 * 60.00174 * 3 2 1 7 7 C 1.37876 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99701 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.47732 * 299.99941 * 9 7 2 11 11 O 1.42904 * 109.46981 * 60.00538 * 9 7 2 12 12 C 1.53001 * 109.46965 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.47131 * 180.02562 * 12 9 7 14 14 C 1.46962 * 110.99658 * 293.79667 * 13 12 9 15 15 C 1.53051 * 109.36446 * 176.81502 * 14 13 12 16 16 N 1.46952 * 109.36448 * 58.39918 * 15 14 13 17 17 C 1.46896 * 110.99790 * 176.80982 * 16 15 14 18 18 C 1.54260 * 110.03773 * 304.61627 * 17 16 15 19 19 C 1.54890 * 104.19998 * 217.10581 * 18 17 16 20 20 C 1.54892 * 102.74543 * 37.94184 * 19 18 17 21 21 C 1.53882 * 110.03283 * 187.44806 * 17 16 15 22 22 C 1.46950 * 110.88417 * 300.68250 * 16 15 14 23 23 C 1.46958 * 110.99821 * 170.00122 * 13 12 9 24 24 H 0.97005 * 120.00726 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00183 * 59.99379 * 11 9 7 26 26 H 1.09001 * 109.47214 * 300.00076 * 12 9 7 27 27 H 1.08993 * 109.47143 * 60.00063 * 12 9 7 28 28 H 1.08999 * 109.48705 * 296.78502 * 14 13 12 29 29 H 1.08999 * 109.48551 * 56.84662 * 14 13 12 30 30 H 1.08999 * 109.48738 * 298.43409 * 15 14 13 31 31 H 1.08994 * 109.50210 * 178.38356 * 15 14 13 32 32 H 1.09004 * 110.01720 * 66.06162 * 17 16 15 33 33 H 1.09001 * 110.48364 * 335.78208 * 18 17 16 34 34 H 1.08996 * 110.48841 * 98.42234 * 18 17 16 35 35 H 1.09005 * 110.75375 * 279.62495 * 19 18 17 36 36 H 1.09004 * 110.75841 * 156.25640 * 19 18 17 37 37 H 1.09007 * 110.48116 * 203.38269 * 20 19 18 38 38 H 1.08991 * 110.48537 * 80.73931 * 20 19 18 39 39 H 1.09002 * 110.03463 * 238.57113 * 21 17 16 40 40 H 1.08995 * 110.03059 * 359.95449 * 21 17 16 41 41 H 1.09007 * 109.48994 * 299.35561 * 22 16 15 42 42 H 1.08998 * 109.49461 * 179.29052 * 22 16 15 43 43 H 1.08992 * 109.48821 * 303.14967 * 23 13 12 44 44 H 1.08999 * 109.49103 * 63.21750 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5564 0.8919 11 8 0.4291 -2.5756 -1.1648 12 6 2.2453 -3.6620 0.0015 13 7 1.5109 -4.9343 0.0020 14 6 0.7687 -5.1133 1.2577 15 6 -0.0438 -6.4084 1.1867 16 7 0.8629 -7.5400 0.9482 17 6 0.1284 -8.8122 0.9489 18 6 -0.6579 -8.9678 2.2669 19 6 -0.5528 -10.4777 2.5960 20 6 0.8948 -10.8214 2.1653 21 6 1.1156 -9.9908 0.8843 22 6 1.6051 -7.3610 -0.3074 23 6 2.4176 -6.0659 -0.2365 24 1 -0.4851 0.8400 -0.0004 25 1 0.9210 -2.5308 -1.9962 26 1 2.8713 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8909 28 1 1.4703 -5.1693 2.0900 29 1 0.0953 -4.2691 1.4056 30 1 -0.7642 -6.3415 0.3714 31 1 -0.5727 -6.5582 2.1279 32 1 -0.5538 -8.8496 0.0996 33 1 -0.2000 -8.3725 3.0569 34 1 -1.6996 -8.6797 2.1260 35 1 -1.2752 -11.0509 2.0148 36 1 -0.6897 -10.6509 3.6635 37 1 0.9861 -11.8861 1.9501 38 1 1.6033 -10.5254 2.9388 39 1 0.9120 -10.6007 0.0041 40 1 2.1396 -9.6188 0.8516 41 1 0.9034 -7.3049 -1.1397 42 1 2.2785 -8.2052 -0.4554 43 1 2.9462 -5.9162 -1.1778 44 1 3.1380 -6.1328 0.5788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:38 Heat of formation + Delta-G solvation = -70.376771 kcal Electronic energy + Delta-G solvation = -21431.012258 eV Core-core repulsion = 18381.663996 eV Total energy + Delta-G solvation = -3049.348262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73861 -38.88879 -37.29225 -35.03909 -34.20607 -32.12195 -30.80281 -29.50474 -28.81493 -26.78757 -25.05095 -24.51056 -22.22406 -21.27650 -20.96521 -20.41573 -19.09167 -17.64279 -16.67991 -16.63299 -16.47081 -16.08321 -15.89419 -15.68637 -15.36070 -15.20681 -14.75003 -14.52073 -14.18026 -14.05918 -13.18051 -13.15023 -12.93175 -12.81477 -12.67955 -12.51401 -12.28777 -12.21827 -12.01329 -11.93832 -11.85980 -11.73207 -11.52161 -11.46964 -11.34067 -10.95010 -10.69159 -10.09266 -9.33530 -9.11142 -8.13279 -6.39424 1.39633 1.40665 1.53044 2.38273 2.88052 3.03484 3.13162 3.63897 3.77145 3.92335 4.07795 4.11149 4.18267 4.28474 4.34772 4.43185 4.49755 4.53551 4.58145 4.61193 4.65536 4.71294 4.76686 4.77235 4.89528 4.91743 4.97829 5.01198 5.07111 5.09490 5.10382 5.23540 5.27071 5.34291 5.52175 5.60479 5.74993 5.97539 6.04008 6.15502 6.27800 6.31426 6.74290 7.34838 7.62198 8.91371 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046160 B = 0.003633 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.437181 B = 7705.964554 C = 7930.494526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.020 0.980 11 O -0.570 6.570 12 C 0.050 3.950 13 N -0.539 5.539 14 C 0.063 3.937 15 C 0.070 3.930 16 N -0.535 5.535 17 C 0.076 3.924 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.115 4.115 22 C 0.064 3.936 23 C 0.056 3.944 24 H 0.261 0.739 25 H 0.352 0.648 26 H 0.071 0.929 27 H 0.022 0.978 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -20.976 2.689 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.077 0.923 9 C 0.180 3.820 10 H 0.037 0.963 11 O -0.373 6.373 12 C -0.078 4.078 13 N -0.264 5.264 14 C -0.066 4.066 15 C -0.058 4.058 16 N -0.261 5.261 17 C -0.032 4.032 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.064 4.064 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.196 0.804 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.634 -20.932 3.144 21.230 hybrid contribution 0.644 1.477 -0.371 1.654 sum 2.278 -19.455 2.773 19.783 Atomic orbital electron populations 1.70233 1.07677 1.27277 1.48460 1.25909 0.95496 1.02944 0.93374 0.85486 0.79115 0.79082 0.77719 1.18715 1.20397 1.20504 1.22082 0.93520 0.92821 1.54217 0.92329 1.19162 0.87755 0.90024 0.85020 0.96275 1.86501 1.38645 1.96460 1.15699 1.22670 0.95882 0.89659 0.99623 1.62125 1.27833 1.02019 1.34450 1.22048 0.96978 0.97311 0.90257 1.22010 0.93665 0.89230 1.00933 1.62394 1.27348 1.01878 1.34441 1.22406 0.94382 0.88910 0.97483 1.22472 0.99105 0.97862 0.96365 1.22457 0.97123 0.94480 1.01582 1.22295 0.96682 0.99785 0.96734 1.22214 0.99235 0.95000 0.98875 1.22140 0.97086 0.97132 0.90057 1.22217 0.93982 0.90048 1.00916 0.93005 0.80405 0.91101 0.95966 0.95130 0.92532 0.95598 0.89201 0.94770 0.91395 0.91862 0.90868 0.90734 0.90460 0.91939 0.91012 0.91247 0.95204 0.88222 0.89799 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.62 12.84 21.45 0.28 -54.35 16 2 C 0.03 1.42 5.40 84.65 0.46 1.88 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.59 -32.88 8.76 25.60 0.22 -32.65 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.24 12.54 2.71 29.85 0.08 12.62 16 10 H 0.02 1.15 6.49 -2.39 -0.02 1.13 16 11 O -0.57 -30.87 12.59 -148.98 -1.88 -32.75 16 12 C 0.05 2.11 4.56 86.30 0.39 2.51 16 13 N -0.54 -20.35 4.58 -895.71 -4.10 -24.45 16 14 C 0.06 2.30 5.41 86.31 0.47 2.77 16 15 C 0.07 2.12 5.32 86.31 0.46 2.57 16 16 N -0.54 -13.96 4.47 -866.27 -3.87 -17.83 16 17 C 0.08 1.62 2.67 45.64 0.12 1.74 16 18 C -0.12 -2.28 5.12 31.67 0.16 -2.12 16 19 C -0.12 -1.73 6.91 31.89 0.22 -1.51 16 20 C -0.12 -1.70 6.83 31.67 0.22 -1.49 16 21 C -0.12 -1.97 5.92 31.32 0.19 -1.78 16 22 C 0.06 1.64 5.36 86.31 0.46 2.11 16 23 C 0.06 1.69 5.61 86.31 0.48 2.17 16 24 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 25 H 0.35 17.05 9.04 -74.06 -0.67 16.38 16 26 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 27 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 2.41 6.34 -2.39 -0.02 2.40 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 2.44 6.53 -2.39 -0.02 2.42 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 1.44 7.45 -2.39 -0.02 1.42 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.27 6.65 -2.39 -0.02 1.26 16 41 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.10 2.07 6.48 -2.39 -0.02 2.06 16 43 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.77 334.70 -3.32 -68.09 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.29 Total: 26.64 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 3.93 Total: -11.18 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -7.69 Total: -96.63 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.88 Total: -32.75 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.77 -3.32 -68.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.287 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds