Wall clock time and date at job start Mon Mar 30 2020 01:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99886 * 2 1 4 4 H 1.48507 * 109.46899 * 269.99906 * 3 2 1 5 5 H 1.48504 * 109.47375 * 29.99615 * 3 2 1 6 6 H 1.48493 * 109.47148 * 150.00129 * 3 2 1 7 7 C 1.37877 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46676 * 299.99773 * 9 7 2 11 11 O 1.42899 * 109.47104 * 59.99904 * 9 7 2 12 12 C 1.52997 * 109.47038 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47341 * 177.72718 * 12 9 7 14 14 C 1.47903 * 111.00393 * 294.28319 * 13 12 9 15 15 C 1.53988 * 107.22687 * 214.25203 * 14 13 12 16 16 C 1.54588 * 105.14091 * 1.12356 * 15 14 13 17 17 H 1.09001 * 110.72403 * 263.59729 * 16 15 14 18 18 C 1.53005 * 110.72517 * 140.31771 * 16 15 14 19 19 N 1.46898 * 109.47214 * 66.45340 * 18 16 15 20 20 C 1.48524 * 110.99872 * 52.60472 * 19 18 16 21 21 C 1.54942 * 103.22340 * 159.72155 * 20 19 18 22 22 C 1.54591 * 102.92326 * 322.58478 * 21 20 19 23 23 C 1.47898 * 110.99763 * 170.00467 * 19 18 16 24 24 C 1.48806 * 111.18896 * 176.94225 * 13 12 9 25 25 H 0.96997 * 120.00424 * 0.02562 * 1 2 3 26 26 H 0.96694 * 113.99979 * 60.00156 * 11 9 7 27 27 H 1.09005 * 109.47012 * 57.72807 * 12 9 7 28 28 H 1.09004 * 109.47153 * 297.73043 * 12 9 7 29 29 H 1.08998 * 109.91837 * 94.79678 * 14 13 12 30 30 H 1.09004 * 109.91199 * 333.70335 * 14 13 12 31 31 H 1.09007 * 110.30605 * 120.04031 * 15 14 13 32 32 H 1.09005 * 110.30889 * 242.10370 * 15 14 13 33 33 H 1.09001 * 109.47223 * 186.45963 * 18 16 15 34 34 H 1.08999 * 109.46793 * 306.45104 * 18 16 15 35 35 H 1.08999 * 110.67043 * 278.15435 * 20 19 18 36 36 H 1.09001 * 110.67063 * 41.28984 * 20 19 18 37 37 H 1.09001 * 110.72287 * 204.22475 * 21 20 19 38 38 H 1.09005 * 110.87712 * 81.01751 * 21 20 19 39 39 H 1.09005 * 110.31191 * 263.04306 * 22 21 20 40 40 H 1.08999 * 110.39622 * 140.91734 * 22 21 20 41 41 H 1.09001 * 109.91872 * 333.50658 * 23 19 18 42 42 H 1.08999 * 109.92154 * 94.80489 * 23 19 18 43 43 H 1.09005 * 110.52036 * 41.07800 * 24 13 12 44 44 H 1.08997 * 110.84345 * 278.09301 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9874 -0.5201 1.1679 12 6 4.0216 -2.6365 0.0010 13 7 5.4895 -2.6369 -0.0534 14 6 5.9726 -2.0856 -1.3380 15 6 7.2580 -2.8488 -1.7072 16 6 7.4551 -3.8803 -0.5728 17 1 8.1484 -3.5005 0.1777 18 6 7.9428 -5.2171 -1.1351 19 7 9.2934 -5.0520 -1.6887 20 6 10.2048 -4.4328 -0.6927 21 6 11.6126 -4.8159 -1.2143 22 6 11.4040 -6.2506 -1.7509 23 6 9.8925 -6.3620 -2.0240 24 6 6.0301 -4.0214 0.0187 25 1 -0.4850 0.8400 -0.0004 26 1 3.7018 -0.9234 1.9990 27 1 3.6257 -3.1618 -0.8682 28 1 3.6915 -3.1387 0.9104 29 1 6.1902 -1.0232 -1.2278 30 1 5.2187 -2.2317 -2.1116 31 1 7.1346 -3.3572 -2.6636 32 1 8.1054 -2.1645 -1.7499 33 1 7.9651 -5.9602 -0.3379 34 1 7.2656 -5.5489 -1.9221 35 1 10.0812 -3.3500 -0.6790 36 1 10.0343 -4.8532 0.2984 37 1 12.3397 -4.8097 -0.4023 38 1 11.9256 -4.1462 -2.0154 39 1 11.7081 -6.9824 -1.0025 40 1 11.9668 -6.3970 -2.6728 41 1 9.4582 -7.1404 -1.3967 42 1 9.7212 -6.5904 -3.0759 43 1 5.4277 -4.6988 -0.5867 44 1 6.0747 -4.3671 1.0514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:22 Heat of formation + Delta-G solvation = -41.762386 kcal Electronic energy + Delta-G solvation = -21099.615017 eV Core-core repulsion = 18051.507567 eV Total energy + Delta-G solvation = -3048.107449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63163 -38.28555 -35.91226 -33.37656 -32.19156 -30.90116 -29.17060 -28.85654 -28.03280 -25.18313 -23.84389 -21.67400 -21.45810 -20.94882 -20.13863 -19.16001 -17.26223 -16.50938 -16.17316 -15.63037 -14.95302 -14.69337 -14.53054 -14.21902 -14.06038 -13.73965 -13.26662 -13.05404 -12.87661 -12.65896 -12.40292 -12.12426 -11.75122 -11.68334 -11.46085 -11.40973 -11.27685 -10.92558 -10.88515 -10.85222 -10.66306 -10.58621 -10.31336 -10.28340 -9.82874 -8.98216 -8.60942 -8.58435 -8.18880 -7.83217 -6.10060 -4.21113 3.42379 3.51688 3.74210 3.80335 4.30054 4.41209 4.50439 4.57798 4.64969 4.85747 4.93485 4.99641 5.03698 5.22470 5.25718 5.30393 5.44062 5.48190 5.48689 5.52954 5.56842 5.63942 5.72298 5.79510 5.83503 5.90692 5.94312 5.95165 6.01355 6.12452 6.20937 6.32255 6.40711 6.50332 6.65143 6.68257 6.83827 7.26298 7.42876 7.50108 7.74472 8.32774 8.86790 9.15877 9.55407 11.00655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048079 B = 0.003473 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.239848 B = 8060.364884 C = 8287.794162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.202 3.798 10 H 0.052 0.948 11 O -0.571 6.571 12 C 0.032 3.968 13 N -0.507 5.507 14 C 0.034 3.966 15 C -0.111 4.111 16 C -0.090 4.090 17 H 0.081 0.919 18 C 0.057 3.943 19 N -0.514 5.514 20 C 0.034 3.966 21 C -0.125 4.125 22 C -0.131 4.131 23 C 0.034 3.966 24 C 0.039 3.961 25 H 0.264 0.736 26 H 0.354 0.646 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.672 -11.942 -2.408 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.088 0.912 9 C 0.144 3.856 10 H 0.069 0.931 11 O -0.376 6.376 12 C -0.096 4.096 13 N -0.231 5.231 14 C -0.094 4.094 15 C -0.149 4.149 16 C -0.109 4.109 17 H 0.100 0.900 18 C -0.072 4.072 19 N -0.238 5.238 20 C -0.094 4.094 21 C -0.163 4.163 22 C -0.169 4.169 23 C -0.094 4.094 24 C -0.090 4.090 25 H 0.074 0.926 26 H 0.199 0.801 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.894 -10.817 -2.881 24.590 hybrid contribution -0.541 -0.665 0.291 0.905 sum 21.352 -11.482 -2.590 24.382 Atomic orbital electron populations 1.69962 1.06797 1.27445 1.49012 1.24991 0.94612 1.00023 0.92501 0.87023 0.83194 0.81690 0.78357 1.21492 1.22288 1.13709 1.21538 0.89992 0.94765 1.54044 0.91161 1.19688 0.92973 0.86927 0.85970 0.93055 1.86658 1.77942 1.56937 1.16057 1.22991 0.85097 1.01114 1.00352 1.64846 1.10592 1.15458 1.32212 1.22876 0.95605 1.00134 0.90798 1.22320 0.97513 0.97204 0.97856 1.22122 0.96766 0.94360 0.97687 0.90038 1.22330 0.90395 0.96573 0.97888 1.64793 1.01763 1.19115 1.38176 1.23246 0.91624 1.00678 0.93833 1.22487 0.96686 0.96371 1.00742 1.22395 0.95868 0.97345 1.01327 1.22880 0.94116 0.90903 1.01499 1.23244 0.93888 0.91557 1.00311 0.92622 0.80064 0.94874 0.91348 0.90585 0.93919 0.91507 0.91516 0.94680 0.90588 0.89695 0.93748 0.91221 0.90745 0.91708 0.91113 0.93895 0.90453 0.94241 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 22.26 26.99 -169.99 -4.59 17.67 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.21 -5.40 5.30 56.52 0.30 -5.10 16 7 C -0.57 -15.94 9.34 -34.44 -0.32 -16.26 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.20 4.83 2.27 -27.88 -0.06 4.77 16 10 H 0.05 1.28 6.73 -51.93 -0.35 0.93 16 11 O -0.57 -13.44 10.05 -35.23 -0.35 -13.79 16 12 C 0.03 0.66 4.34 -3.83 -0.02 0.64 16 13 N -0.51 -8.93 5.21 -230.22 -1.20 -10.13 16 14 C 0.03 0.56 5.54 -2.76 -0.02 0.55 16 15 C -0.11 -1.46 6.33 -25.38 -0.16 -1.62 16 16 C -0.09 -1.10 2.69 -88.76 -0.24 -1.33 16 17 H 0.08 1.01 6.72 -51.93 -0.35 0.66 16 18 C 0.06 0.60 4.36 -3.82 -0.02 0.58 16 19 N -0.51 -5.18 5.21 -230.46 -1.20 -6.38 16 20 C 0.03 0.31 5.11 -1.90 -0.01 0.30 16 21 C -0.12 -0.94 7.06 -24.87 -0.18 -1.11 16 22 C -0.13 -0.93 6.93 -25.37 -0.18 -1.11 16 23 C 0.03 0.29 6.70 -2.75 -0.02 0.27 16 24 C 0.04 0.55 6.02 -1.74 -0.01 0.54 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.35 7.48 9.04 45.56 0.41 7.89 16 27 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.73 7.64 -51.93 -0.40 0.34 16 31 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.35 7.81 -51.93 -0.41 -0.05 16 34 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.08 0.82 7.60 -51.93 -0.39 0.43 16 36 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.56 7.93 -51.93 -0.41 0.15 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -31.19 335.52 -10.23 -41.43 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.40 Total: 4.51 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.32 Total: -11.47 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -1.63 Total: -43.40 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.35 Total: -13.79 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.59 Total: 17.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.19 -10.23 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.336 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds