Wall clock time and date at job start Mon Mar 30 2020 01:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99886 * 2 1 4 4 H 1.48507 * 109.46899 * 269.99906 * 3 2 1 5 5 H 1.48504 * 109.47375 * 29.99615 * 3 2 1 6 6 H 1.48493 * 109.47148 * 150.00129 * 3 2 1 7 7 C 1.37877 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46676 * 299.99773 * 9 7 2 11 11 O 1.42899 * 109.47104 * 59.99904 * 9 7 2 12 12 C 1.52997 * 109.47038 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47341 * 177.72718 * 12 9 7 14 14 C 1.47903 * 111.00393 * 294.28319 * 13 12 9 15 15 C 1.53988 * 107.22687 * 214.25203 * 14 13 12 16 16 C 1.54588 * 105.14091 * 1.12356 * 15 14 13 17 17 H 1.09001 * 110.72403 * 263.59729 * 16 15 14 18 18 C 1.53005 * 110.72517 * 140.31771 * 16 15 14 19 19 N 1.46898 * 109.47214 * 66.45340 * 18 16 15 20 20 C 1.48524 * 110.99872 * 52.60472 * 19 18 16 21 21 C 1.54942 * 103.22340 * 159.72155 * 20 19 18 22 22 C 1.54591 * 102.92326 * 322.58478 * 21 20 19 23 23 C 1.47898 * 110.99763 * 170.00467 * 19 18 16 24 24 C 1.48806 * 111.18896 * 176.94225 * 13 12 9 25 25 H 0.96997 * 120.00424 * 0.02562 * 1 2 3 26 26 H 0.96694 * 113.99979 * 60.00156 * 11 9 7 27 27 H 1.09005 * 109.47012 * 57.72807 * 12 9 7 28 28 H 1.09004 * 109.47153 * 297.73043 * 12 9 7 29 29 H 1.08998 * 109.91837 * 94.79678 * 14 13 12 30 30 H 1.09004 * 109.91199 * 333.70335 * 14 13 12 31 31 H 1.09007 * 110.30605 * 120.04031 * 15 14 13 32 32 H 1.09005 * 110.30889 * 242.10370 * 15 14 13 33 33 H 1.09001 * 109.47223 * 186.45963 * 18 16 15 34 34 H 1.08999 * 109.46793 * 306.45104 * 18 16 15 35 35 H 1.08999 * 110.67043 * 278.15435 * 20 19 18 36 36 H 1.09001 * 110.67063 * 41.28984 * 20 19 18 37 37 H 1.09001 * 110.72287 * 204.22475 * 21 20 19 38 38 H 1.09005 * 110.87712 * 81.01751 * 21 20 19 39 39 H 1.09005 * 110.31191 * 263.04306 * 22 21 20 40 40 H 1.08999 * 110.39622 * 140.91734 * 22 21 20 41 41 H 1.09001 * 109.91872 * 333.50658 * 23 19 18 42 42 H 1.08999 * 109.92154 * 94.80489 * 23 19 18 43 43 H 1.09005 * 110.52036 * 41.07800 * 24 13 12 44 44 H 1.08997 * 110.84345 * 278.09301 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6804 -0.8889 11 8 3.9874 -0.5201 1.1679 12 6 4.0216 -2.6365 0.0010 13 7 5.4895 -2.6369 -0.0534 14 6 5.9726 -2.0856 -1.3380 15 6 7.2580 -2.8488 -1.7072 16 6 7.4551 -3.8803 -0.5728 17 1 8.1484 -3.5005 0.1777 18 6 7.9428 -5.2171 -1.1351 19 7 9.2934 -5.0520 -1.6887 20 6 10.2048 -4.4328 -0.6927 21 6 11.6126 -4.8159 -1.2143 22 6 11.4040 -6.2506 -1.7509 23 6 9.8925 -6.3620 -2.0240 24 6 6.0301 -4.0214 0.0187 25 1 -0.4850 0.8400 -0.0004 26 1 3.7018 -0.9234 1.9990 27 1 3.6257 -3.1618 -0.8682 28 1 3.6915 -3.1387 0.9104 29 1 6.1902 -1.0232 -1.2278 30 1 5.2187 -2.2317 -2.1116 31 1 7.1346 -3.3572 -2.6636 32 1 8.1054 -2.1645 -1.7499 33 1 7.9651 -5.9602 -0.3379 34 1 7.2656 -5.5489 -1.9221 35 1 10.0812 -3.3500 -0.6790 36 1 10.0343 -4.8532 0.2984 37 1 12.3397 -4.8097 -0.4023 38 1 11.9256 -4.1462 -2.0154 39 1 11.7081 -6.9824 -1.0025 40 1 11.9668 -6.3970 -2.6728 41 1 9.4582 -7.1404 -1.3967 42 1 9.7212 -6.5904 -3.0759 43 1 5.4277 -4.6988 -0.5867 44 1 6.0747 -4.3671 1.0514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:22 Heat of formation + Delta-G solvation = -65.808584 kcal Electronic energy + Delta-G solvation = -21100.657738 eV Core-core repulsion = 18051.507567 eV Total energy + Delta-G solvation = -3049.150170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60068 -39.36571 -37.65189 -34.49097 -34.38088 -32.04564 -30.08586 -29.98407 -29.50539 -26.70406 -25.05148 -23.07145 -22.44627 -21.76363 -21.39735 -20.30960 -19.34986 -17.45764 -16.94874 -16.85011 -16.55220 -16.41681 -16.11521 -15.54696 -15.16758 -14.90285 -14.67898 -14.46312 -13.97105 -13.82368 -13.54295 -13.44899 -13.26561 -12.88440 -12.75771 -12.53146 -12.34329 -12.25222 -12.08758 -11.99981 -11.90843 -11.63831 -11.63053 -11.39125 -11.36224 -11.06448 -10.81925 -10.11580 -9.33660 -9.26841 -8.37104 -6.51790 1.38637 1.43961 1.75397 2.43474 2.94218 3.01234 3.12887 3.70544 3.75867 3.79382 3.85124 4.01838 4.11343 4.14902 4.30713 4.31146 4.39305 4.40729 4.48916 4.57321 4.66659 4.70580 4.74423 4.77395 4.81276 4.94509 4.94790 5.00349 5.03011 5.10188 5.11050 5.22145 5.23073 5.34539 5.38085 5.43053 5.49002 5.98130 6.03093 6.06762 6.10009 6.16358 6.60753 7.21477 7.36855 8.77150 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048079 B = 0.003473 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.239848 B = 8060.364884 C = 8287.794162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.029 3.971 3 Si 0.938 3.062 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.036 0.964 9 C 0.211 3.789 10 H 0.045 0.955 11 O -0.573 6.573 12 C 0.046 3.954 13 N -0.517 5.517 14 C 0.031 3.969 15 C -0.100 4.100 16 C -0.078 4.078 17 H 0.084 0.916 18 C 0.064 3.936 19 N -0.527 5.527 20 C 0.031 3.969 21 C -0.122 4.122 22 C -0.128 4.128 23 C 0.031 3.969 24 C 0.038 3.962 25 H 0.267 0.733 26 H 0.366 0.634 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.282 -12.345 -2.264 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.128 1.128 7 C -0.606 4.606 8 H 0.055 0.945 9 C 0.153 3.847 10 H 0.062 0.938 11 O -0.380 6.380 12 C -0.082 4.082 13 N -0.240 5.240 14 C -0.098 4.098 15 C -0.138 4.138 16 C -0.097 4.097 17 H 0.102 0.898 18 C -0.065 4.065 19 N -0.251 5.251 20 C -0.096 4.096 21 C -0.160 4.160 22 C -0.166 4.166 23 C -0.097 4.097 24 C -0.090 4.090 25 H 0.076 0.924 26 H 0.213 0.787 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.522 -11.241 -2.733 27.114 hybrid contribution -1.373 -0.612 0.253 1.524 sum 23.149 -11.854 -2.479 26.125 Atomic orbital electron populations 1.70079 1.08445 1.28449 1.50899 1.25848 0.95278 1.03616 0.92351 0.85988 0.81990 0.77412 0.78377 1.21207 1.22184 1.12795 1.21858 0.92403 0.93349 1.52960 0.94532 1.19454 0.90167 0.89205 0.85902 0.93763 1.86589 1.77637 1.57257 1.16468 1.22653 0.87115 0.98372 1.00092 1.64772 1.08463 1.17898 1.32914 1.22902 0.96858 0.99953 0.90040 1.22233 0.95934 0.97248 0.98385 1.22024 0.95473 0.95026 0.97166 0.89795 1.22202 0.90832 0.95491 0.97939 1.64779 1.01665 1.20193 1.38486 1.23269 0.92419 1.00192 0.93757 1.22485 0.95992 0.96511 1.01056 1.22397 0.94921 0.97279 1.02012 1.22936 0.95010 0.90171 1.01552 1.23322 0.94885 0.89575 1.01203 0.92387 0.78722 0.95739 0.91192 0.91818 0.95114 0.91038 0.90713 0.93947 0.90914 0.90407 0.93693 0.89974 0.91013 0.90767 0.90347 0.93630 0.90458 0.94047 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.10 13.96 21.45 0.30 -58.81 16 2 C 0.03 1.69 5.47 84.65 0.46 2.16 16 3 Si 0.94 46.17 26.99 68.60 1.85 48.03 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.21 -9.77 5.30 99.48 0.53 -9.24 16 7 C -0.57 -32.45 9.34 25.60 0.24 -32.21 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 9 C 0.21 9.99 2.27 29.85 0.07 10.06 16 10 H 0.04 2.18 6.73 -2.39 -0.02 2.17 16 11 O -0.57 -26.12 10.05 -148.98 -1.50 -27.62 16 12 C 0.05 1.85 4.34 86.30 0.37 2.23 16 13 N -0.52 -17.56 5.21 -882.27 -4.60 -22.16 16 14 C 0.03 0.98 5.54 86.44 0.48 1.46 16 15 C -0.10 -2.46 6.33 31.47 0.20 -2.26 16 16 C -0.08 -1.72 2.69 -9.59 -0.03 -1.75 16 17 H 0.08 1.87 6.72 -2.39 -0.02 1.85 16 18 C 0.06 1.21 4.36 86.31 0.38 1.58 16 19 N -0.53 -9.46 5.21 -883.03 -4.60 -14.06 16 20 C 0.03 0.50 5.11 86.65 0.44 0.94 16 21 C -0.12 -1.55 7.06 31.80 0.22 -1.32 16 22 C -0.13 -1.49 6.93 31.47 0.22 -1.27 16 23 C 0.03 0.46 6.70 86.45 0.58 1.04 16 24 C 0.04 1.02 6.02 86.60 0.52 1.54 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.37 14.90 9.04 -74.06 -0.67 14.23 16 27 H 0.02 1.01 7.94 -2.38 -0.02 0.99 16 28 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.05 7.64 -2.38 -0.02 1.03 16 31 H 0.07 1.71 7.80 -2.38 -0.02 1.69 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.04 0.75 7.81 -2.39 -0.02 0.73 16 34 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.08 1.35 7.60 -2.39 -0.02 1.33 16 36 H 0.04 0.72 8.02 -2.39 -0.02 0.70 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.64 7.57 -2.39 -0.02 0.63 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.04 1.10 7.93 -2.38 -0.02 1.08 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.06 335.52 -4.28 -70.34 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.10 Total: 22.09 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.16 Total: -17.81 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -8.90 Total: -95.02 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.50 Total: -27.62 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.85 Total: 48.03 kcal Total: -66.06 -4.28 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.527 kcal (2) G-P(sol) polarization free energy of solvation -66.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds