Wall clock time and date at job start Mon Mar 30 2020 01:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00226 * 2 1 4 4 H 1.48497 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47126 * 300.00201 * 3 2 1 6 6 H 1.48505 * 109.46982 * 60.00119 * 3 2 1 7 7 C 1.37878 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00181 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46984 * 300.00413 * 9 7 2 11 11 O 1.42898 * 109.46820 * 59.99670 * 9 7 2 12 12 C 1.52998 * 109.47062 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46631 * 179.97438 * 12 9 7 14 14 C 1.47440 * 111.00040 * 69.87673 * 13 12 9 15 15 C 1.54316 * 107.23568 * 123.25316 * 14 13 12 16 16 C 1.55139 * 103.01878 * 22.28546 * 15 14 13 17 17 H 1.08996 * 110.99632 * 82.47283 * 16 15 14 18 18 C 1.53003 * 110.99216 * 206.25737 * 16 15 14 19 19 N 1.46899 * 109.47004 * 183.41183 * 18 16 15 20 20 C 1.48534 * 111.00275 * 58.33433 * 19 18 16 21 21 C 1.54936 * 103.22716 * 159.71976 * 20 19 18 22 22 C 1.54592 * 102.92257 * 322.58581 * 21 20 19 23 23 C 1.47913 * 110.99802 * 175.72976 * 19 18 16 24 24 C 1.47848 * 110.99687 * 190.71529 * 13 12 9 25 25 H 0.97003 * 119.99772 * 359.97438 * 1 2 3 26 26 H 0.96704 * 114.00137 * 60.00331 * 11 9 7 27 27 H 1.09002 * 109.47349 * 299.99630 * 12 9 7 28 28 H 1.08996 * 109.47030 * 60.00617 * 12 9 7 29 29 H 1.09002 * 109.89179 * 242.66031 * 14 13 12 30 30 H 1.08999 * 109.89086 * 3.84961 * 14 13 12 31 31 H 1.09000 * 110.70750 * 140.66422 * 15 14 13 32 32 H 1.09000 * 110.70684 * 263.72913 * 15 14 13 33 33 H 1.09005 * 109.46713 * 303.41152 * 18 16 15 34 34 H 1.08992 * 109.47412 * 63.40782 * 18 16 15 35 35 H 1.09003 * 110.66286 * 278.15269 * 20 19 18 36 36 H 1.09002 * 110.66791 * 41.28452 * 20 19 18 37 37 H 1.09000 * 110.72420 * 204.22602 * 21 20 19 38 38 H 1.08996 * 110.87818 * 81.01551 * 21 20 19 39 39 H 1.09004 * 110.31028 * 263.04373 * 22 21 20 40 40 H 1.09001 * 110.39842 * 140.91855 * 22 21 20 41 41 H 1.08997 * 109.91248 * 333.50436 * 23 19 18 42 42 H 1.08993 * 109.91420 * 94.60195 * 23 19 18 43 43 H 1.09003 * 110.37496 * 332.47053 * 24 13 12 44 44 H 1.08999 * 110.37367 * 94.80802 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5745 -1.1670 12 6 2.2452 -3.6621 -0.0018 13 7 1.5106 -4.9343 -0.0012 14 6 0.8348 -5.1548 -1.2929 15 6 1.3363 -6.5051 -1.8466 16 6 1.8342 -7.2411 -0.5749 17 1 1.0060 -7.7163 -0.0492 18 6 2.9180 -8.2637 -0.9223 19 7 3.3063 -8.9966 0.2901 20 6 2.1359 -9.6815 0.8961 21 6 2.7844 -10.7752 1.7815 22 6 3.9926 -11.2349 0.9337 23 6 4.2799 -10.0646 -0.0251 24 6 2.4205 -6.0713 0.2542 25 1 -0.4850 0.8401 0.0004 26 1 0.9207 -2.5290 -1.9984 27 1 2.8712 -3.6040 -0.8923 28 1 2.8725 -3.6048 0.8877 29 1 -0.2445 -5.1925 -1.1452 30 1 1.0886 -4.3527 -1.9860 31 1 0.5212 -7.0557 -2.3162 32 1 2.1534 -6.3530 -2.5518 33 1 2.5322 -8.9646 -1.6627 34 1 3.7875 -7.7476 -1.3291 35 1 1.5566 -8.9872 1.5048 36 1 1.5115 -10.1316 0.1243 37 1 2.0913 -11.6005 1.9446 38 1 3.1166 -10.3587 2.7323 39 1 3.7393 -12.1326 0.3696 40 1 4.8560 -11.4213 1.5724 41 1 4.1522 -10.3903 -1.0574 42 1 5.2951 -9.6978 0.1255 43 1 3.4289 -5.8339 -0.0847 44 1 2.4251 -6.3228 1.3148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:25 Heat of formation + Delta-G solvation = -44.363808 kcal Electronic energy + Delta-G solvation = -21153.559336 eV Core-core repulsion = 18105.339081 eV Total energy + Delta-G solvation = -3048.220255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52878 -38.24361 -35.59334 -33.12885 -32.06264 -30.89794 -29.17078 -28.33658 -27.85226 -25.13923 -23.74752 -21.59239 -21.25669 -20.88469 -19.97451 -19.46108 -16.88424 -16.40941 -16.12454 -15.51129 -14.73502 -14.57984 -14.41492 -14.19674 -13.88473 -13.48672 -13.03650 -12.95079 -12.90110 -12.60574 -12.18033 -11.94349 -11.64037 -11.52771 -11.32786 -11.32465 -11.05162 -10.91485 -10.81539 -10.78035 -10.65122 -10.51970 -10.45176 -10.13368 -9.92729 -8.90615 -8.54787 -8.52304 -7.97909 -7.54318 -5.95660 -4.13695 3.29442 3.37548 3.41049 3.80777 4.37287 4.42690 4.47961 4.66902 4.71160 4.87892 5.03042 5.06955 5.14578 5.27752 5.31062 5.36902 5.48291 5.53228 5.58335 5.60489 5.62164 5.77855 5.80887 5.86926 5.92825 5.97156 6.07979 6.09464 6.29421 6.31284 6.42148 6.49545 6.65644 6.73133 6.74715 6.90552 6.96472 7.65154 7.76717 7.82299 8.02703 8.27643 8.90463 9.43845 9.63510 11.08417 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040513 B = 0.003429 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.971579 B = 8163.595085 C = 8405.732672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.572 4.572 8 H 0.054 0.946 9 C 0.235 3.765 10 H 0.062 0.938 11 O -0.558 6.558 12 C 0.029 3.971 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.142 4.142 16 C -0.095 4.095 17 H 0.081 0.919 18 C 0.059 3.941 19 N -0.514 5.514 20 C 0.034 3.966 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.034 3.966 24 C 0.059 3.941 25 H 0.259 0.741 26 H 0.338 0.662 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -21.027 -1.457 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.610 4.610 8 H 0.073 0.927 9 C 0.178 3.822 10 H 0.080 0.920 11 O -0.361 6.361 12 C -0.099 4.099 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.181 4.181 16 C -0.114 4.114 17 H 0.100 0.900 18 C -0.069 4.069 19 N -0.239 5.239 20 C -0.094 4.094 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.094 4.094 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.182 0.818 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.173 -20.526 -0.243 21.170 hybrid contribution 1.317 0.428 -1.629 2.138 sum 6.490 -20.098 -1.872 21.203 Atomic orbital electron populations 1.70100 1.05882 1.26182 1.47200 1.25031 0.94677 0.99044 0.93927 0.86635 0.80219 0.83974 0.77642 1.19768 1.20966 1.20881 1.21699 0.93150 0.91654 1.54540 0.92750 1.19367 0.88078 0.88603 0.86191 0.91999 1.86652 1.38469 1.95938 1.15066 1.23135 0.96971 0.90520 0.99301 1.63580 1.28386 1.01983 1.31261 1.22832 0.99671 0.94417 0.90255 1.22930 1.00440 0.97794 0.96909 1.22332 0.97155 0.95241 0.96719 0.90050 1.22279 0.98269 0.95805 0.90547 1.64783 1.10557 1.22754 1.25762 1.23253 0.93129 0.95640 0.97380 1.22480 0.96810 0.97926 0.99027 1.22388 0.98945 0.97522 0.98041 1.22860 0.97746 0.91209 0.97549 1.22937 0.94415 0.89577 0.99936 0.93119 0.81837 0.96089 0.91698 0.90953 0.91528 0.91540 0.92054 0.94857 0.90732 0.89562 0.93915 0.91251 0.90637 0.91775 0.91084 0.94063 0.90435 0.94391 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 12.84 55.43 0.71 -25.02 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.57 -15.97 8.76 -34.44 -0.30 -16.27 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.24 6.10 3.08 -27.88 -0.09 6.02 16 10 H 0.06 1.82 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -14.30 10.34 -35.23 -0.36 -14.66 16 12 C 0.03 0.62 4.40 -3.82 -0.02 0.60 16 13 N -0.53 -10.09 5.16 -231.25 -1.19 -11.28 16 14 C 0.06 0.98 5.51 -2.84 -0.02 0.96 16 15 C -0.14 -1.92 6.41 -24.91 -0.16 -2.08 16 16 C -0.10 -1.25 2.86 -88.48 -0.25 -1.50 16 17 H 0.08 1.08 6.64 -51.93 -0.34 0.74 16 18 C 0.06 0.67 4.29 -3.82 -0.02 0.66 16 19 N -0.51 -5.66 5.27 -230.45 -1.21 -6.87 16 20 C 0.03 0.33 5.37 -1.90 -0.01 0.32 16 21 C -0.12 -1.02 7.06 -24.87 -0.18 -1.19 16 22 C -0.13 -1.00 6.93 -25.38 -0.18 -1.18 16 23 C 0.03 0.31 6.70 -2.75 -0.02 0.30 16 24 C 0.06 0.94 6.07 -2.30 -0.01 0.93 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.34 7.76 7.92 45.56 0.36 8.12 16 27 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 28 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.22 5.20 -51.93 -0.27 0.95 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 33 H 0.03 0.35 7.97 -51.93 -0.41 -0.06 16 34 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 35 H 0.09 0.92 7.50 -51.93 -0.39 0.53 16 36 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.36 7.67 -51.93 -0.40 -0.04 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.04 0.61 7.60 -51.93 -0.39 0.22 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.36 337.24 -10.62 -40.98 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.28 Total: 5.67 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.34 Total: -10.29 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -1.70 Total: -43.17 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.36 Total: -14.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.36 -10.62 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.388 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds