Wall clock time and date at job start Mon Mar 30 2020 01:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00226 * 2 1 4 4 H 1.48497 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47126 * 300.00201 * 3 2 1 6 6 H 1.48505 * 109.46982 * 60.00119 * 3 2 1 7 7 C 1.37878 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00181 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46984 * 300.00413 * 9 7 2 11 11 O 1.42898 * 109.46820 * 59.99670 * 9 7 2 12 12 C 1.52998 * 109.47062 * 179.97438 * 9 7 2 13 13 N 1.46905 * 109.46631 * 179.97438 * 12 9 7 14 14 C 1.47440 * 111.00040 * 69.87673 * 13 12 9 15 15 C 1.54316 * 107.23568 * 123.25316 * 14 13 12 16 16 C 1.55139 * 103.01878 * 22.28546 * 15 14 13 17 17 H 1.08996 * 110.99632 * 82.47283 * 16 15 14 18 18 C 1.53003 * 110.99216 * 206.25737 * 16 15 14 19 19 N 1.46899 * 109.47004 * 183.41183 * 18 16 15 20 20 C 1.48534 * 111.00275 * 58.33433 * 19 18 16 21 21 C 1.54936 * 103.22716 * 159.71976 * 20 19 18 22 22 C 1.54592 * 102.92257 * 322.58581 * 21 20 19 23 23 C 1.47913 * 110.99802 * 175.72976 * 19 18 16 24 24 C 1.47848 * 110.99687 * 190.71529 * 13 12 9 25 25 H 0.97003 * 119.99772 * 359.97438 * 1 2 3 26 26 H 0.96704 * 114.00137 * 60.00331 * 11 9 7 27 27 H 1.09002 * 109.47349 * 299.99630 * 12 9 7 28 28 H 1.08996 * 109.47030 * 60.00617 * 12 9 7 29 29 H 1.09002 * 109.89179 * 242.66031 * 14 13 12 30 30 H 1.08999 * 109.89086 * 3.84961 * 14 13 12 31 31 H 1.09000 * 110.70750 * 140.66422 * 15 14 13 32 32 H 1.09000 * 110.70684 * 263.72913 * 15 14 13 33 33 H 1.09005 * 109.46713 * 303.41152 * 18 16 15 34 34 H 1.08992 * 109.47412 * 63.40782 * 18 16 15 35 35 H 1.09003 * 110.66286 * 278.15269 * 20 19 18 36 36 H 1.09002 * 110.66791 * 41.28452 * 20 19 18 37 37 H 1.09000 * 110.72420 * 204.22602 * 21 20 19 38 38 H 1.08996 * 110.87818 * 81.01551 * 21 20 19 39 39 H 1.09004 * 110.31028 * 263.04373 * 22 21 20 40 40 H 1.09001 * 110.39842 * 140.91855 * 22 21 20 41 41 H 1.08997 * 109.91248 * 333.50436 * 23 19 18 42 42 H 1.08993 * 109.91420 * 94.60195 * 23 19 18 43 43 H 1.09003 * 110.37496 * 332.47053 * 24 13 12 44 44 H 1.08999 * 110.37367 * 94.80802 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5745 -1.1670 12 6 2.2452 -3.6621 -0.0018 13 7 1.5106 -4.9343 -0.0012 14 6 0.8348 -5.1548 -1.2929 15 6 1.3363 -6.5051 -1.8466 16 6 1.8342 -7.2411 -0.5749 17 1 1.0060 -7.7163 -0.0492 18 6 2.9180 -8.2637 -0.9223 19 7 3.3063 -8.9966 0.2901 20 6 2.1359 -9.6815 0.8961 21 6 2.7844 -10.7752 1.7815 22 6 3.9926 -11.2349 0.9337 23 6 4.2799 -10.0646 -0.0251 24 6 2.4205 -6.0713 0.2542 25 1 -0.4850 0.8401 0.0004 26 1 0.9207 -2.5290 -1.9984 27 1 2.8712 -3.6040 -0.8923 28 1 2.8725 -3.6048 0.8877 29 1 -0.2445 -5.1925 -1.1452 30 1 1.0886 -4.3527 -1.9860 31 1 0.5212 -7.0557 -2.3162 32 1 2.1534 -6.3530 -2.5518 33 1 2.5322 -8.9646 -1.6627 34 1 3.7875 -7.7476 -1.3291 35 1 1.5566 -8.9872 1.5048 36 1 1.5115 -10.1316 0.1243 37 1 2.0913 -11.6005 1.9446 38 1 3.1166 -10.3587 2.7323 39 1 3.7393 -12.1326 0.3696 40 1 4.8560 -11.4213 1.5724 41 1 4.1522 -10.3903 -1.0574 42 1 5.2951 -9.6978 0.1255 43 1 3.4289 -5.8339 -0.0847 44 1 2.4251 -6.3228 1.3148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:24 Heat of formation + Delta-G solvation = -67.070654 kcal Electronic energy + Delta-G solvation = -21154.543979 eV Core-core repulsion = 18105.339081 eV Total energy + Delta-G solvation = -3049.204898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59888 -39.39558 -37.41095 -34.40815 -34.11851 -32.15326 -30.00109 -29.64942 -29.40487 -26.75600 -25.08012 -22.92494 -22.46558 -21.75027 -21.41856 -20.55724 -18.98409 -17.44296 -16.91580 -16.67056 -16.59226 -16.27698 -16.02195 -15.59065 -15.12420 -14.69218 -14.55292 -14.15475 -13.88325 -13.77800 -13.47735 -13.29671 -13.05892 -12.88037 -12.81595 -12.65124 -12.44546 -12.24398 -12.08732 -11.98833 -11.83632 -11.78364 -11.59635 -11.39796 -11.36274 -10.99682 -10.71122 -9.98358 -9.33432 -9.06496 -8.12751 -6.39125 1.39812 1.40787 1.53337 2.38801 3.00297 3.12423 3.21559 3.71476 3.74443 3.80621 3.86873 4.04344 4.16999 4.23131 4.37760 4.38768 4.44663 4.48169 4.51556 4.59882 4.66384 4.73936 4.77827 4.84889 4.89351 4.94590 4.99473 5.01453 5.06774 5.09820 5.19344 5.23359 5.26943 5.34032 5.42919 5.62989 5.74547 5.99423 6.02763 6.11132 6.30693 6.32512 6.74738 7.33461 7.54701 8.91860 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040513 B = 0.003429 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.971579 B = 8163.595085 C = 8405.732672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.587 4.587 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.018 0.982 11 O -0.568 6.568 12 C 0.048 3.952 13 N -0.547 5.547 14 C 0.055 3.945 15 C -0.129 4.129 16 C -0.083 4.083 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.533 5.533 20 C 0.032 3.968 21 C -0.122 4.122 22 C -0.127 4.127 23 C 0.032 3.968 24 C 0.062 3.938 25 H 0.261 0.739 26 H 0.349 0.651 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 -22.330 -2.235 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.076 0.924 9 C 0.180 3.820 10 H 0.035 0.965 11 O -0.372 6.372 12 C -0.080 4.080 13 N -0.272 5.272 14 C -0.073 4.073 15 C -0.168 4.168 16 C -0.102 4.102 17 H 0.099 0.901 18 C -0.061 4.061 19 N -0.258 5.258 20 C -0.096 4.096 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.096 4.096 24 C -0.065 4.065 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.538 -21.851 -1.024 22.832 hybrid contribution 0.853 0.800 -1.359 1.793 sum 7.391 -21.051 -2.383 22.438 Atomic orbital electron populations 1.70240 1.07676 1.27271 1.48399 1.25919 0.95508 1.02954 0.93355 0.85475 0.79082 0.79040 0.77734 1.18755 1.20346 1.20494 1.22061 0.93468 0.92782 1.54249 0.92388 1.19131 0.87858 0.90164 0.84802 0.96458 1.86590 1.38983 1.96078 1.15567 1.22718 0.95631 0.90363 0.99300 1.63457 1.29116 1.01966 1.32621 1.22755 0.98598 0.96527 0.89433 1.22841 1.01388 0.95459 0.97129 1.22234 0.97627 0.94586 0.95762 0.90118 1.22151 0.97381 0.95503 0.91051 1.64754 1.11347 1.23887 1.25768 1.23257 0.92936 0.95800 0.97601 1.22478 0.97280 0.97822 0.98463 1.22387 0.98899 0.97363 0.97839 1.22911 0.97117 0.91185 0.98346 1.22914 0.93921 0.89485 1.00169 0.92998 0.80555 0.95498 0.92097 0.92735 0.92705 0.89531 0.90881 0.93451 0.90928 0.90916 0.93386 0.89788 0.91305 0.90487 0.90415 0.93386 0.90630 0.94407 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.90 12.84 21.45 0.28 -54.62 16 2 C 0.03 1.43 5.40 84.66 0.46 1.89 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.59 -33.17 8.76 25.60 0.22 -32.94 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.24 12.74 3.08 29.85 0.09 12.83 16 10 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 11 O -0.57 -29.85 10.34 -148.98 -1.54 -31.39 16 12 C 0.05 2.11 4.40 86.30 0.38 2.49 16 13 N -0.55 -21.10 5.16 -885.53 -4.57 -25.67 16 14 C 0.05 1.90 5.51 86.65 0.48 2.37 16 15 C -0.13 -3.26 6.41 31.77 0.20 -3.06 16 16 C -0.08 -2.04 2.86 -9.41 -0.03 -2.06 16 17 H 0.08 2.03 6.64 -2.39 -0.02 2.01 16 18 C 0.07 1.38 4.29 86.30 0.37 1.75 16 19 N -0.53 -10.78 5.27 -883.00 -4.65 -15.43 16 20 C 0.03 0.57 5.37 86.65 0.47 1.04 16 21 C -0.12 -1.77 7.06 31.80 0.22 -1.55 16 22 C -0.13 -1.64 6.93 31.47 0.22 -1.42 16 23 C 0.03 0.52 6.70 86.44 0.58 1.10 16 24 C 0.06 1.95 6.07 86.77 0.53 2.48 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.35 16.33 7.92 -74.05 -0.59 15.75 16 27 H 0.03 1.13 7.96 -2.39 -0.02 1.11 16 28 H 0.06 2.66 8.07 -2.39 -0.02 2.64 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 2.02 5.20 -2.39 -0.01 2.01 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 33 H 0.05 0.85 7.97 -2.38 -0.02 0.83 16 34 H 0.07 1.52 8.00 -2.39 -0.02 1.50 16 35 H 0.07 1.50 7.50 -2.39 -0.02 1.48 16 36 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.71 7.67 -2.39 -0.02 0.69 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.19 7.60 -2.39 -0.02 1.17 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -65.52 337.24 -3.90 -69.42 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.37 Total: 26.68 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 4.19 Total: -15.10 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -8.95 Total: -95.73 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.54 Total: -31.39 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.52 -3.90 -69.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.350 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds